Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 6.9e-287 989.9 502 100.0
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.9e-269 931.4 503 94.0
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 4.0e-234 814.7 511 82.6
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.7e-229 799.3 512 81.6
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 3.7e-224 781.6 503 80.7
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.3e-221 772.3 503 79.9
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.3e-220 768.5 467 84.2
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 5.2e-186 654.8 485 73.4
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 6.7e-165 584.7 450 64.4
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 3.3e-164 582.4 494 62.6
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 1.4e-162 577.0 468 63.5
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 3.1e-162 575.9 452 65.0
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 3.1e-162 575.9 493 61.5
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 4.0e-162 575.5 471 64.1
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 3.8e-160 568.9 466 63.9
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 6.5e-160 568.2 475 61.7
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.4e-159 567.0 474 62.7
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 3.5e-158 562.4 469 62.0
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 4.6e-158 562.0 480 60.8
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 6.0e-158 561.6 464 62.3
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.3e-157 560.5 470 61.3
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 1.8e-157 560.1 488 59.4
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 3.9e-157 558.9 389 71.0
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.1e-157 558.5 469 61.4
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 8.7e-157 557.8 469 61.4
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 4.3e-156 555.4 473 61.5
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.3e-155 553.9 468 61.1
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.8e-155 552.7 468 60.7
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 2.8e-155 552.7 468 60.3
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 3.7e-155 552.4 451 63.0
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 6.3e-155 551.6 515 58.1
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.4e-154 550.4 466 60.7
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 1.2e-153 547.4 460 61.1
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.2e-153 547.4 462 61.0
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 2.6e-153 546.2 464 61.2
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 7.6e-153 544.7 399 68.7
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.6e-153 544.7 472 59.1
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 1.0e-152 544.3 468 59.2
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 1.0e-152 544.3 454 61.0
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.3e-152 543.9 469 59.5
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 2.9e-152 542.7 476 60.1
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 8.5e-152 541.2 472 58.7
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.4e-151 540.4 484 59.1
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 7.2e-151 538.1 464 59.9
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 2.7e-150 536.2 457 59.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 2.7e-150 536.2 457 59.7
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 4.6e-150 535.4 440 60.5
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 1.8e-149 533.5 474 59.5
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.8e-149 533.5 461 61.0
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 3.0e-149 532.7 492 57.7
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 3.0e-149 532.7 452 58.4
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.9e-149 532.3 454 60.4
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 8.8e-149 531.2 481 57.4
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.1e-148 530.8 460 60.9
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 1.5e-148 530.4 473 59.4
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.9e-148 530.0 455 59.1
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 9.7e-148 527.7 407 63.4
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.3e-147 527.3 407 63.4
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 4.8e-147 525.4 461 57.7
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.1e-146 524.2 450 59.3
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.8e-146 523.5 453 60.7
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.8e-146 523.5 451 59.4
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.5e-145 520.4 478 57.3
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 3.4e-145 519.2 491 56.6
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 4.5e-145 518.8 457 58.4
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 7.7e-145 518.1 460 59.1
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.3e-144 517.3 467 59.3
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 3.2e-143 512.7 450 57.8
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.2e-143 512.3 472 57.0
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 4.2e-143 512.3 461 56.2
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 7.2e-143 511.5 446 58.3
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 1.6e-142 510.4 450 57.6
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.9e-142 508.1 465 56.8
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.1e-140 504.2 489 55.0
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 2.6e-140 503.1 456 58.1
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 5.7e-140 501.9 458 56.8
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 1.5e-137 493.8 454 58.6
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 5.9e-137 491.9 349 68.2
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 3.8e-136 489.2 465 56.1
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.2e-134 484.2 489 54.8
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 2.1e-134 483.4 486 54.3
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 2.1e-134 483.4 448 56.5
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 2.1e-134 483.4 406 60.1
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 8.0e-134 481.5 471 56.5
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 6.7e-133 478.4 448 56.2
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.5e-132 477.2 448 56.0
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 2.2e-131 473.4 448 56.9
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.4e-130 469.9 405 59.8
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 7.0e-130 468.4 484 53.3
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.2e-129 467.6 453 55.4
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 1.7e-128 463.8 448 56.0
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 5.5e-127 458.8 450 57.3
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.6e-121 440.7 332 65.7
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 3.2e-119 433.0 393 56.5
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 3.4e-116 422.9 489 49.5
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 2.2e-115 420.2 501 47.5
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 2.8e-115 419.9 325 63.4
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.4e-114 417.5 487 48.9
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.0e-109 401.4 420 53.6
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 6.3e-107 392.1 406 51.5
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.7e-104 384.0 396 50.3
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 2.3e-96 357.1 401 49.1
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 3.0e-88 330.1 409 48.9
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.2e-77 292.7 215 65.6
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.9e-71 274.2 396 40.7
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.2e-65 255.0 192 62.5
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.3e-62 245.0 352 45.7
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.8e-61 241.1 206 64.6
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 4.9e-59 233.0 194 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 5.1e-40 169.9 318 33.6
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 1.5e-39 168.3 106 78.3
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 6.9e-29 132.9 139 54.7
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.8e-24 118.2 155 48.4
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 2.0e-20 104.8 234 29.5
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 1.0e-19 102.4 321 24.0
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 4.2e-18 97.1 80 62.5
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.8e-16 91.7 119 51.3
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 7.4e-15 86.3 204 28.4
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 7.4e-15 86.3 204 28.4
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 5.5e-10 70.1 114 30.7
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.0e-08 65.9 88 46.6
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.0e-08 65.9 278 22.7
EL10Ac2g03340 Beta vulgaris HOM05D005973 ORTHO05D007285 1.8e-08 65.1 94 36.2
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 2.3e-08 64.7 153 28.8
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 5.2e-08 63.5 85 38.8
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 8.8e-08 62.8 153 27.5
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.2e-07 62.4 278 22.3
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 2.0e-07 61.6 153 28.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 9.7e-07 59.3 121 27.3
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 9.7e-07 59.3 118 26.3
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 9.7e-07 59.3 118 26.3
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 6.3e-06 56.6 117 25.6


User provided reference genes

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