Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 0.0e+00 1669.1 875 100.0
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 0.0e+00 1397.9 904 83.6
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 0.0e+00 1262.3 853 79.6
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 0.0e+00 1231.9 853 78.1
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 0.0e+00 1221.5 853 77.6
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 0.0e+00 1157.9 852 74.3
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 9.2e-263 910.6 859 60.1
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 7.1e-247 857.8 858 58.5
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 3.0e-245 852.4 857 57.3
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 1.9e-231 806.6 857 55.0
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 2.6e-172 610.1 829 43.4
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 5.8e-172 609.0 855 44.4
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.6e-169 600.9 860 44.7
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 8.1e-166 588.6 849 44.1
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 8.9e-165 585.1 888 42.8
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 2.1e-161 573.9 852 43.3
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 3.0e-160 570.1 825 43.0
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 4.9e-155 552.7 898 39.6
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 1.9e-154 550.8 838 41.2
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 8.4e-147 525.4 857 39.3
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 1.9e-146 524.2 834 38.5
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 4.2e-146 523.1 855 39.4
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 3.5e-145 520.0 846 40.1
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 6.0e-145 519.2 814 39.9
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 7.8e-145 518.8 834 40.4
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 1.3e-144 518.1 863 40.9
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 5.1e-144 516.2 862 39.6
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 6.6e-144 515.8 863 38.7
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 1.1e-143 515.0 841 39.8
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 9.0e-141 505.4 852 39.0
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 2.6e-140 503.8 852 39.1
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 3.4e-140 503.4 836 38.2
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 4.9e-139 499.6 831 40.4
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 4.9e-139 499.6 865 38.8
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.3e-136 491.5 860 37.2
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 4.0e-133 479.9 836 37.2
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 5.3e-133 479.6 854 39.5
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 6.9e-133 479.2 860 37.3
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 6.9e-133 479.2 829 38.5
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 7.6e-132 475.7 833 38.1
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 6.4e-131 472.6 849 37.8
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 3.2e-130 470.3 898 36.6
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 2.1e-129 467.6 820 37.1
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 3.0e-128 463.8 821 37.0
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 6.7e-128 462.6 830 38.1
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 1.8e-125 454.5 819 37.2
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 1.8e-125 454.5 835 35.9
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 2.4e-125 454.1 894 36.6
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 9.0e-125 452.2 899 35.7
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 1.2e-124 451.8 863 36.8
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 1.5e-124 451.4 839 37.3
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.5e-124 449.9 851 37.4
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 3.5e-121 440.3 906 35.3
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 5.1e-120 436.4 868 36.1
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 1.9e-119 434.5 908 35.1
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 4.8e-118 429.9 910 35.9
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 8.2e-118 429.1 834 35.7
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 1.1e-117 428.7 870 34.7
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 1.2e-116 425.2 838 35.1
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 7.6e-116 422.5 853 36.9
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 6.5e-115 419.5 783 37.0
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.1e-114 418.7 843 35.6
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 5.5e-114 416.4 840 35.8
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 3.5e-113 413.7 840 34.9
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 2.3e-112 411.0 623 40.9
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 1.1e-111 408.7 844 35.5
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 7.4e-111 406.0 672 39.6
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 3.7e-110 403.7 843 34.9
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 4.8e-110 403.3 869 33.4
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 6.3e-110 402.9 843 36.3
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 6.3e-110 402.9 843 36.3
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 1.3e-107 395.2 790 35.7
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 2.9e-107 394.0 838 34.0
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.9e-106 391.3 928 33.0
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 5.5e-106 389.8 862 35.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 3.6e-105 387.1 822 34.9
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.1e-105 386.3 928 33.1
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 2.3e-104 384.4 840 33.6
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 3.9e-104 383.6 843 33.6
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 6.3e-102 376.3 922 33.7
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 2.4e-101 374.4 840 33.6
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 3.4e-100 370.5 845 32.8
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 2.2e-99 367.9 845 32.8
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 6.5e-99 366.3 817 33.8
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 2.1e-97 361.3 844 32.1
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 5.1e-96 356.7 787 36.2
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 8.8e-96 355.9 834 32.3
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 2.8e-94 350.9 847 33.2
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 6.3e-94 349.7 811 34.0
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 1.2e-92 345.5 838 32.9
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.9e-91 340.9 835 31.3
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 5.0e-91 340.1 845 32.5
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 4.2e-90 337.0 846 32.5
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 2.3e-88 331.3 846 31.2
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 5.2e-88 330.1 813 32.3
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 6.7e-88 329.7 830 32.8
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 1.7e-83 315.1 829 32.3
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.2e-83 314.7 856 32.2
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 2.0e-79 301.6 765 33.1
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 9.8e-79 299.3 739 33.2
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 2.8e-78 297.7 707 34.8
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.9e-75 287.7 347 52.4
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 1.2e-73 282.3 738 29.5
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 6.1e-73 280.0 725 30.1
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 8.3e-70 269.6 781 30.6
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 1.4e-69 268.9 758 30.2
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 2.9e-67 261.2 764 30.1
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 1.2e-65 255.8 720 30.7
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 4.0e-64 250.8 889 26.9
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.7e-62 245.4 755 29.3
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 1.7e-62 245.4 462 38.3
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 2.9e-62 244.6 847 28.9
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 2.9e-62 244.6 784 27.6
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 6.4e-62 243.4 843 28.1
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 1.8e-61 241.9 761 29.7
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 2.5e-58 231.5 754 27.2
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 4.0e-56 224.2 739 28.3
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 1.9e-53 215.3 711 27.3
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 9.2e-53 213.0 651 29.2
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 5.2e-48 197.2 815 25.0
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 7.1e-45 186.8 556 29.5
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 6.2e-41 173.7 484 33.1
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 6.8e-40 170.2 682 26.7
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 1.3e-38 166.0 664 27.1
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.4e-37 161.8 722 26.6
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.3e-35 156.0 439 27.6
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 1.2e-33 149.4 578 27.7
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 3.6e-33 147.9 650 25.8
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 1.5e-31 142.5 305 41.0
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 5.8e-31 140.6 575 26.4
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 2.4e-29 135.2 594 26.3
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 2.4e-29 135.2 594 25.8
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 2.4e-29 135.2 594 26.3
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 5.4e-29 134.0 510 28.4
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 2.7e-28 131.7 584 26.7
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 3.5e-28 131.3 593 27.2
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 3.3e-26 124.8 584 25.0
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 2.8e-25 121.7 626 22.5
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 2.8e-25 121.7 624 23.7
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 6.2e-25 120.6 495 27.1
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 1.4e-24 119.4 621 23.7
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.8e-24 119.0 318 29.6
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 1.5e-23 115.9 583 24.5
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 1.9e-21 109.0 612 25.3
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 5.4e-21 107.5 574 23.2
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 6.7e-19 100.5 706 22.1
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 8.7e-19 100.1 758 23.7
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 1.9e-18 99.0 270 30.4
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 5.8e-15 87.4 297 24.9
Rhsim02G0161700 Rhododendron simsii HOM05D004088 ORTHO05D004736 1.9e-13 82.4 129 45.0
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 3.5e-12 78.2 654 22.6
SEGI_23472 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 3.3e-10 71.6 294 25.2
BcaC05g27073 Brassica carinata HOM05D000169 ORTHO05D007693 4.3e-10 71.2 173 30.6
CDE12G0022 Ceratophyllum demersum HOM05D000617 ORTHO05D004736 7.4e-10 70.5 85 47.1
CDE12G0814 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 8.1e-09 67.0 270 23.0
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.8e-08 65.9 507 21.3
CAN.G1043.1 Capsicum annuum HOM05D000679 ORTHO05D000137 6.9e-08 63.9 31 87.1
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 2.6e-07 62.0 432 23.6
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 7.6e-07 60.5 207 27.1
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 2.2e-06 58.9 120 35.0


User provided reference genes

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