Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 8.7e-151 537.0 273 100.0
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 5.0e-122 441.4 278 82.7
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.9e-106 389.0 284 73.6
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.5e-99 365.5 285 71.2
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 8.5e-90 334.3 289 65.4
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 3.1e-84 315.8 287 62.4
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 3.1e-84 315.8 292 62.3
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 1.2e-83 313.9 284 62.7
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 1.1e-81 307.4 283 62.2
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 6.4e-69 265.0 221 60.6
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 1.2e-67 260.8 246 58.1
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 2.3e-66 256.5 188 68.1
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 2.3e-66 256.5 226 60.6
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 1.5e-65 253.8 226 60.6
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 4.7e-64 248.8 278 51.4
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 4.0e-63 245.7 187 65.8
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 1.2e-62 244.2 269 50.9
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.6e-62 243.0 228 56.1
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 2.6e-62 243.0 241 53.1
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 3.4e-62 242.7 199 61.3
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 3.4e-62 242.7 269 50.2
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 3.4e-62 242.7 183 64.5
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 4.4e-62 242.3 244 53.7
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 4.4e-62 242.3 255 54.5
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 9.8e-62 241.1 259 51.7
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 1.7e-61 240.4 200 61.0
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 2.2e-61 240.0 243 53.5
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 3.7e-61 239.2 202 60.4
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 6.4e-61 238.4 198 61.1
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 6.4e-61 238.4 219 56.6
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 6.4e-61 238.4 191 62.8
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 6.4e-61 238.4 239 53.6
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 1.1e-60 237.7 276 47.5
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 1.1e-60 237.7 276 47.5
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 1.1e-60 237.7 227 61.7
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 1.4e-60 237.3 194 62.4
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 1.9e-60 236.9 195 62.6
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 4.1e-60 235.7 248 52.8
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 4.1e-60 235.7 244 53.3
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 5.4e-60 235.3 192 63.5
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.1e-60 235.0 239 54.4
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 7.1e-60 235.0 195 61.0
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 1.2e-59 234.2 206 58.3
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 1.6e-59 233.8 191 60.7
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 3.5e-59 232.6 244 53.3
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.6e-59 232.3 239 54.4
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.6e-59 232.3 239 53.6
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 6.0e-59 231.9 197 61.4
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 6.0e-59 231.9 216 55.6
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 7.8e-59 231.5 198 59.1
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 1.0e-58 231.1 247 53.0
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 1.3e-58 230.7 211 58.3
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.3e-58 229.9 239 53.6
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 3.0e-58 229.6 189 61.9
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 3.0e-58 229.6 187 61.5
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 3.9e-58 229.2 209 57.4
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 3.9e-58 229.2 254 50.8
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 6.6e-58 228.4 235 54.0
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 1.1e-57 227.6 196 56.6
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 1.5e-57 227.3 249 48.6
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 1.5e-57 227.3 186 60.2
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 7.3e-57 224.9 202 55.9
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 7.3e-57 224.9 208 53.8
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 9.5e-57 224.6 202 55.9
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 2.1e-56 223.4 183 63.4
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 2.1e-56 223.4 208 59.6
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 4.7e-56 222.2 190 57.9
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 6.2e-56 221.9 194 57.7
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 6.2e-56 221.9 279 49.8
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 2.3e-55 219.9 225 52.4
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 2.3e-55 219.9 280 48.6
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 3.4e-54 216.1 225 51.6
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 4.4e-54 215.7 225 51.6
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 5.8e-54 215.3 199 55.8
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 9.9e-54 214.5 225 51.6
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 9.9e-54 214.5 225 51.6
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 2.2e-53 213.4 199 55.3
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 6.4e-53 211.8 225 50.7
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 8.3e-53 211.5 199 54.8
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 3.2e-52 209.5 199 54.8
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 1.2e-51 207.6 225 49.3
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 2.1e-51 206.8 191 57.1
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 2.7e-51 206.5 227 52.0
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 4.6e-51 205.7 199 53.3
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 4.6e-51 205.7 252 46.8
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 6.0e-51 205.3 207 52.7
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 1.0e-50 204.5 207 51.7
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 6.6e-50 201.8 233 46.4
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 1.1e-49 201.1 204 51.5
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 1.9e-49 200.3 153 60.8
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 4.3e-49 199.1 186 54.8
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 9.6e-49 198.0 197 51.8
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 1.2e-48 197.6 245 44.9
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.6e-48 197.2 205 52.2
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 2.8e-48 196.4 181 58.0
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 3.1e-47 193.0 219 50.7
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 2.2e-45 186.8 144 63.2
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 1.1e-44 184.5 151 60.3
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 5.4e-44 182.2 194 49.5
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 2.1e-43 180.3 183 49.7
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.1e-35 153.7 108 67.6
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 1.6e-32 144.1 197 44.2
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 1.1e-31 141.4 146 56.8
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.6e-30 136.7 131 53.4
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 3.4e-30 136.3 141 53.9
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 6.4e-29 132.1 173 44.5
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.1e-28 131.3 116 57.8
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 3.5e-27 126.3 136 52.9
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 6.0e-27 125.6 278 36.0
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 7.9e-27 125.2 167 46.1
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 1.1e-25 121.3 123 56.1
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 4.3e-25 119.4 127 53.5
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 7.4e-25 118.6 148 45.3
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 1.5e-22 110.9 165 39.4
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.4e-22 109.8 111 51.4
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 8.4e-21 105.1 135 45.9
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-20 104.0 112 44.6
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.5e-17 93.6 95 53.7
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 5.0e-13 79.3 71 56.3
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 4.2e-12 76.3 92 50.0
PRCOL_00000981 Prasinoderma coloniale HOM05D006270 ORTHO05D007755 4.8e-08 62.8 90 43.3
MCO16G519 Micromonas commoda HOM05D006270 ORTHO05D007755 6.9e-07 58.9 85 36.5
SEGI_09763 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.5e-06 57.8 64 48.4
Cre16.g657150 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 2.6e-06 57.0 80 42.5
SEGI_10524 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 4.5e-06 56.2 66 43.9


User provided reference genes

Program Settings