Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 4.3e-36 154.8 126 100.0
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.8e-16 88.6 64 62.5
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.8e-16 88.6 64 62.5
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 8.4e-16 87.4 65 64.6
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 9.3e-15 84.0 58 77.6
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 3.5e-14 82.0 70 58.6
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 6.0e-14 81.3 70 58.6
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 7.9e-14 80.9 70 57.1
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 1.3e-13 80.1 67 64.2
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 1.7e-13 79.7 62 62.9
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 2.3e-13 79.3 70 57.1
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 5.1e-13 78.2 65 61.5
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 8.7e-13 77.4 77 63.6
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 8.7e-13 77.4 66 65.2
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 5.6e-12 74.7 67 64.2
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 9.6e-12 73.9 68 52.9
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 9.6e-12 73.9 52 69.2
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 9.6e-12 73.9 67 64.2
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 9.6e-12 73.9 51 66.7
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 9.6e-12 73.9 68 57.4
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.3e-11 73.6 52 67.3
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 1.3e-11 73.6 64 59.4
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 1.6e-11 73.2 63 54.0
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 1.6e-11 73.2 58 60.3
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 2.8e-11 72.4 34 88.2
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 3.6e-11 72.0 35 82.9
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 3.6e-11 72.0 35 85.7
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 3.6e-11 72.0 35 85.7
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.6e-11 72.0 38 78.9
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 3.6e-11 72.0 35 85.7
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 3.6e-11 72.0 35 85.7
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 6.2e-11 71.2 63 68.3
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 6.2e-11 71.2 35 80.0
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 6.2e-11 71.2 35 82.9
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 8.1e-11 70.9 70 55.7
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 8.1e-11 70.9 63 60.3
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 8.1e-11 70.9 37 75.7
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.1e-10 70.5 36 80.6
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 1.1e-10 70.5 34 82.4
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 1.1e-10 70.5 34 82.4
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.1e-10 70.5 35 82.9
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.4e-10 70.1 34 85.3
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 1.4e-10 70.1 38 76.3
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 1.8e-10 69.7 51 66.7
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.8e-10 69.7 34 82.4
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.8e-10 69.7 34 82.4
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.8e-10 69.7 36 77.8
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 3.1e-10 68.9 33 81.8
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.1e-10 68.9 38 76.3
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 4.0e-10 68.6 35 80.0
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 4.0e-10 68.6 33 84.8
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 4.0e-10 68.6 51 62.7
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 5.3e-10 68.2 38 78.9
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 6.9e-10 67.8 38 73.7
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 6.9e-10 67.8 38 73.7
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 6.9e-10 67.8 35 80.0
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 6.9e-10 67.8 35 80.0
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 9.0e-10 67.4 35 77.1
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 9.0e-10 67.4 37 75.7
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 9.0e-10 67.4 74 45.9
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 9.0e-10 67.4 42 73.8
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 9.0e-10 67.4 35 77.1
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 9.0e-10 67.4 35 77.1
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 9.0e-10 67.4 35 77.1
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 9.0e-10 67.4 35 77.1
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 1.2e-09 67.0 67 62.7
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 1.2e-09 67.0 66 51.5
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.5e-09 66.6 32 81.2
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 1.5e-09 66.6 33 81.8
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.0e-09 66.2 35 80.0
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 2.6e-09 65.9 66 59.1
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 2.6e-09 65.9 66 59.1
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 2.6e-09 65.9 35 74.3
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 3.4e-09 65.5 34 79.4
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 5.8e-09 64.7 72 47.2
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 5.8e-09 64.7 62 58.1
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 7.6e-09 64.3 34 76.5
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 7.6e-09 64.3 38 73.7
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 9.9e-09 63.9 35 74.3
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 9.9e-09 63.9 35 74.3
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 1.3e-08 63.5 34 73.5
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 1.3e-08 63.5 34 73.5
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 1.3e-08 63.5 70 48.6
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 1.7e-08 63.2 66 59.1
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 1.7e-08 63.2 58 60.3
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.7e-08 63.2 38 71.1
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 2.2e-08 62.8 34 76.5
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 2.2e-08 62.8 66 59.1
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 3.8e-08 62.0 64 53.1
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 4.9e-08 61.6 32 75.0
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 6.4e-08 61.2 34 70.6
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.4e-07 59.3 71 49.3
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 4.2e-07 58.5 58 56.9
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 2.1e-06 56.2 38 63.2
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 6.0e-06 54.7 32 68.8


User provided reference genes

Program Settings