Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 5.1e-117 424.5 221 100.0
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.9e-100 369.4 220 89.1
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 1.9e-87 326.2 238 74.4
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 1.2e-86 323.6 238 74.4
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 1.8e-85 319.7 238 74.4
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 3.4e-81 305.4 242 72.7
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 5.0e-80 301.6 223 74.4
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 9.4e-71 270.8 237 62.0
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 2.3e-69 266.2 237 61.6
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 4.8e-67 258.5 237 59.9
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 2.6e-65 252.7 238 59.7
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 4.5e-65 251.9 237 57.4
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.3e-64 250.4 237 57.8
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 1.3e-64 250.4 237 56.5
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 2.2e-64 249.6 237 57.8
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 2.2e-64 249.6 230 57.8
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.9e-64 249.2 238 58.4
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 6.5e-64 248.1 238 58.4
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 8.5e-64 247.7 238 58.8
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 8.5e-64 247.7 238 58.4
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.5e-63 246.9 237 56.1
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 1.9e-63 246.5 237 59.1
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 3.2e-63 245.7 237 57.0
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 3.2e-63 245.7 237 55.7
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 1.6e-62 243.4 233 55.8
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 1.6e-62 243.4 237 56.1
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 2.1e-62 243.0 237 54.9
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 2.1e-62 243.0 237 55.3
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.7e-62 242.7 230 57.8
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 3.6e-62 242.3 237 58.2
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 6.1e-62 241.5 237 54.9
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.0e-61 240.7 237 56.5
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.4e-61 240.4 237 57.0
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 1.4e-61 240.4 237 55.3
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 2.3e-61 239.6 230 58.7
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 3.0e-61 239.2 237 56.1
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 4.0e-61 238.8 241 53.5
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 6.7e-61 238.0 237 54.4
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 6.7e-61 238.0 238 55.0
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 8.8e-61 237.7 239 57.7
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 1.1e-60 237.3 237 54.4
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 1.1e-60 237.3 238 58.0
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 1.5e-60 236.9 237 55.3
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 2.6e-60 236.1 237 53.2
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 5.7e-60 235.0 232 57.8
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 5.7e-60 235.0 240 56.7
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 7.5e-60 234.6 239 56.9
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 9.7e-60 234.2 237 56.1
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.3e-59 233.8 237 54.4
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.2e-59 233.0 237 55.3
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 2.8e-59 232.6 237 54.4
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 3.7e-59 232.3 239 55.6
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 4.8e-59 231.9 239 58.2
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 1.1e-58 230.7 237 54.4
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 1.4e-58 230.3 238 54.6
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 1.8e-58 229.9 237 54.4
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 3.1e-58 229.2 232 56.0
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 1.2e-57 227.3 237 55.3
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 1.6e-57 226.9 230 53.5
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 1.6e-57 226.9 237 53.2
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 5.9e-57 224.9 237 53.2
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 1.0e-56 224.2 237 55.7
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 2.2e-56 223.0 231 53.7
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 3.8e-56 222.2 238 54.6
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 8.5e-56 221.1 229 54.1
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 1.1e-55 220.7 230 53.9
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 1.5e-55 220.3 230 54.3
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.5e-55 219.5 231 53.7
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.5e-55 219.5 230 52.6
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 3.2e-55 219.2 230 52.2
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 3.2e-55 219.2 230 54.3
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 4.2e-55 218.8 237 54.0
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 5.5e-55 218.4 237 51.9
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 5.5e-55 218.4 239 54.0
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 2.1e-54 216.5 237 53.2
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 2.7e-54 216.1 237 51.9
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 2.7e-54 216.1 237 51.1
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 3.6e-54 215.7 281 45.6
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 8.0e-54 214.5 230 53.9
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.0e-53 214.2 237 51.5
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 4.0e-53 212.2 249 50.2
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 4.8e-51 205.3 221 53.4
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 6.3e-51 204.9 259 49.4
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 1.4e-50 203.8 234 52.1
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 5.9e-49 198.4 237 47.7
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 1.3e-48 197.2 237 47.3
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.3e-48 197.2 237 47.3
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 2.5e-47 193.0 216 51.4
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 7.2e-47 191.4 238 47.9
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 7.2e-47 191.4 237 44.7
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.1e-46 189.9 237 46.8
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 8.0e-46 188.0 171 60.2
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 8.8e-45 184.5 240 46.7
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 3.4e-44 182.6 214 51.4
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.7e-43 180.3 214 50.9
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 3.1e-42 176.0 217 47.5
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 2.7e-41 172.9 221 48.0
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 2.3e-40 169.9 240 43.3
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 6.6e-40 168.3 239 43.1
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.5e-39 167.2 237 45.1
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.5e-39 166.4 165 57.0
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 4.3e-39 165.6 263 41.1
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.0e-37 161.0 163 51.5
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.8e-37 160.2 243 40.7
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.8e-37 160.2 231 45.5
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 9.8e-36 154.5 224 43.3
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 8.3e-35 151.4 172 52.9
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.4e-34 150.6 231 39.4
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 7.8e-33 144.8 100 73.0
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 4.0e-29 132.5 168 48.2
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 8.9e-29 131.3 92 70.7
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 4.4e-28 129.0 151 49.7
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 3.7e-27 125.9 108 60.2
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.7e-27 125.9 123 53.7
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-21 107.1 261 30.7
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.1e-21 106.3 184 38.6
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 9.8e-20 101.3 231 31.2
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 3.7e-19 99.4 94 58.5
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 6.4e-19 98.6 91 56.0
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.1e-18 97.8 91 56.0
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 3.2e-18 96.3 91 54.9
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 4.6e-17 92.4 91 53.8
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 1.9e-15 87.0 98 52.0
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 4.0e-13 79.3 163 35.0
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 4.0e-13 79.3 163 35.0
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.0e-13 79.3 93 53.8
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 5.2e-13 79.0 75 53.3
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 1.5e-12 77.4 280 26.4
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 1.3e-11 74.3 199 31.2
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 2.9e-11 73.2 77 46.8
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 1.4e-10 70.9 47 76.6
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 2.4e-10 70.1 75 49.3
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 4.1e-10 69.3 54 64.8
Nitab4.5_0012588g0010 Nicotiana tabacum HOM05D000681 ORTHO05D003965 4.3e-07 59.3 45 71.1


User provided reference genes

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