Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 8.4e-154 547.0 273 100.0
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 7.3e-150 533.9 273 96.0
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 2.1e-149 532.3 273 95.6
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 2.1e-149 532.3 273 95.6
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.8e-148 529.3 273 96.0
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.7e-133 478.4 270 85.2
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.7e-133 478.4 272 84.2
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 6.9e-132 474.2 272 82.0
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.2e-131 473.4 270 83.0
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.5e-131 473.0 271 84.9
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.5e-131 473.0 272 83.5
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 2.6e-131 472.2 270 83.3
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 3.4e-131 471.9 271 85.2
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.5e-131 471.5 272 83.8
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 7.6e-131 470.7 271 84.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 7.6e-131 470.7 271 84.1
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 7.6e-131 470.7 269 82.9
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 7.6e-131 470.7 272 84.6
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.7e-130 469.5 272 84.2
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.7e-130 469.5 270 83.0
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.7e-130 469.5 272 83.1
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 2.2e-130 469.2 271 84.1
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 2.2e-130 469.2 272 83.1
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.2e-130 469.2 271 84.9
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.2e-130 469.2 270 82.6
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.9e-130 468.8 270 82.6
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 2.9e-130 468.8 270 81.9
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.9e-130 468.8 272 82.7
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.8e-130 468.4 270 82.6
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 3.8e-130 468.4 272 82.4
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 4.9e-130 468.0 271 83.8
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 4.9e-130 468.0 272 82.7
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 4.9e-130 468.0 270 83.0
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.1e-129 466.8 270 82.6
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.4e-129 466.5 271 83.8
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.4e-129 466.5 272 82.4
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.9e-129 466.1 272 81.6
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.9e-129 466.1 271 83.4
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.9e-129 466.1 270 82.6
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 83.4
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.5e-129 465.7 272 82.4
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.2e-129 465.3 272 83.8
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 3.2e-129 465.3 271 83.8
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 3.2e-129 465.3 270 82.6
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 4.2e-129 464.9 271 82.7
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 82.2
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 81.1
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 4.2e-129 464.9 272 81.6
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 5.5e-129 464.5 272 82.7
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 5.5e-129 464.5 272 82.4
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 5.5e-129 464.5 270 83.0
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 5.5e-129 464.5 272 81.2
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.6e-128 463.0 272 82.0
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 4.6e-128 461.5 271 83.4
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 6.0e-128 461.1 270 81.9
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 7.9e-128 460.7 270 81.9
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 7.9e-128 460.7 270 81.5
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.0e-127 460.3 270 81.5
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.3e-127 459.9 270 80.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.3e-127 459.9 270 80.7
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 1.3e-127 459.9 270 79.6
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.3e-127 459.9 270 81.9
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 3.0e-127 458.8 270 80.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 3.0e-127 458.8 270 81.9
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 5.1e-127 458.0 272 80.9
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 6.7e-127 457.6 270 79.6
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 6.7e-127 457.6 262 84.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 81.5
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.9e-126 456.1 270 78.5
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.9e-126 456.1 270 81.5
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.7e-126 454.5 272 82.0
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.7e-126 454.5 272 82.0
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 5.7e-126 454.5 270 80.7
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 9.7e-126 453.8 270 80.0
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 3.7e-125 451.8 273 83.9
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 4.8e-125 451.4 270 80.7
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 5.3e-124 448.0 270 79.6
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.2e-123 446.8 272 76.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.0e-123 446.0 272 78.7
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 5.9e-123 444.5 272 77.9
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 5.9e-123 444.5 270 78.9
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 5.9e-123 444.5 270 77.0
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.7e-122 443.0 302 72.8
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.4e-121 439.9 257 82.1
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 3.2e-121 438.7 270 77.0
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 3.2e-121 438.7 270 76.7
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 9.4e-121 437.2 270 77.0
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.6e-120 435.3 304 72.4
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 5.1e-119 431.4 272 76.1
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.0e-118 429.5 263 77.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 5.7e-118 427.9 270 75.9
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.9e-116 421.0 300 68.7
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 9.1e-116 420.6 270 74.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 5.9e-115 417.9 270 75.2
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.0e-114 417.2 270 70.7
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 5.0e-114 414.8 270 75.2
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 6.5e-114 414.5 270 71.1
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.4e-113 413.3 270 70.0
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.2e-113 411.8 282 72.0
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 4.2e-113 411.8 381 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.4e-113 410.6 270 70.0
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 9.7e-110 400.6 240 79.2
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 8.2e-109 397.5 243 79.0
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 2.4e-108 396.0 240 79.2
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.7e-106 389.8 222 84.2
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 4.2e-105 385.2 222 82.9
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 9.4e-105 384.0 271 65.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 6.7e-103 377.9 270 67.4
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.1e-102 377.1 270 70.7
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 7.7e-99 364.4 251 74.1
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.4e-95 353.6 270 62.2
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 4.0e-95 352.1 220 77.7
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 5.2e-95 351.7 197 85.3
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 5.7e-94 348.2 270 60.7
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.7e-91 339.3 271 64.6
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 7.7e-91 337.8 271 65.3
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 2.9e-90 335.9 271 64.9
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.1e-89 334.0 290 56.6
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.4e-84 317.0 180 81.1
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 5.4e-84 315.1 272 61.4
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.2e-78 297.4 240 65.4
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.7e-77 292.4 271 57.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 9.2e-76 287.7 168 83.3
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 3.5e-75 285.8 276 49.6
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 2.0e-70 270.0 152 87.5
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.9e-68 263.5 152 79.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 8.6e-66 254.6 165 76.4
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.4e-62 242.7 208 60.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.8e-55 220.3 272 48.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 6.8e-55 218.4 153 71.2
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.3e-49 199.1 272 46.3
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 3.1e-47 193.0 270 43.7
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.2e-43 181.0 140 67.1
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 6.9e-39 165.2 148 62.8
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.2e-35 154.5 261 42.1
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 3.9e-34 149.4 269 39.4
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.5e-33 146.7 89 76.4
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-32 144.4 185 47.6
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 9.9e-30 134.8 130 56.2
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 4.9e-29 132.5 92 71.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 5.4e-28 129.0 135 50.4
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 5.4e-28 129.0 79 73.4
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 4.6e-27 125.9 135 49.6
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 9.0e-23 111.7 119 52.1
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.0e-19 99.0 73 65.8
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.1e-12 78.2 45 80.0
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.2e-12 76.6 89 48.3
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 8.7e-10 68.6 49 65.3
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 1.5e-06 57.8 49 61.2


User provided reference genes

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