Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 0.0e+00 1397.1 704 100.0
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 0.0e+00 1263.4 699 91.1
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 0.0e+00 1224.2 701 88.6
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 0.0e+00 1218.0 701 88.2
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 0.0e+00 1216.1 701 88.0
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 0.0e+00 1185.2 712 85.1
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 0.0e+00 1149.0 591 97.6
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 1.6e-273 946.0 686 71.4
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 6.5e-267 924.1 704 68.0
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 3.0e-264 915.2 684 67.5
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 1.1e-263 913.3 699 68.5
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 1.5e-263 912.9 695 67.5
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 7.0e-261 904.0 702 67.2
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 5.0e-259 897.9 695 66.8
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 2.5e-258 895.6 713 65.9
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 1.0e-256 890.2 698 66.9
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 4.0e-256 888.3 697 67.1
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 8.8e-256 887.1 695 66.6
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 1.7e-254 882.9 703 65.9
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 4.8e-254 881.3 769 61.1
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 4.1e-253 878.2 703 65.4
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 1.6e-252 876.3 696 66.4
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 1.3e-251 873.2 683 66.0
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 1.7e-251 872.8 693 64.8
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 2.2e-251 872.5 689 65.6
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.8e-251 871.7 702 65.2
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 3.8e-251 871.7 707 65.2
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 1.9e-250 869.4 691 66.3
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 2.1e-249 865.9 591 72.8
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 5.2e-248 861.3 703 64.2
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 3.4e-247 858.6 690 66.5
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.3e-246 856.7 692 65.5
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 4.8e-246 854.7 694 63.8
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.6e-244 849.7 701 63.9
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 2.7e-244 849.0 686 64.0
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 7.7e-244 847.4 699 63.8
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 1.3e-243 846.7 686 64.0
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.7e-243 846.3 696 63.8
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 2.3e-243 845.9 696 64.1
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.1e-242 843.6 689 63.6
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.5e-242 843.2 699 63.4
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 1.9e-242 842.8 691 64.4
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 5.5e-242 841.3 708 64.3
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.0e-240 837.0 694 65.4
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 1.2e-239 833.6 693 62.9
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 4.4e-239 831.6 743 60.6
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 8.3e-238 827.4 685 62.3
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 2.4e-237 825.9 699 62.1
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 2.4e-237 825.9 699 62.1
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 2.4e-237 825.9 697 62.4
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 4.1e-237 825.1 699 62.2
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 5.4e-237 824.7 686 62.8
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 5.9e-236 821.2 698 61.9
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 7.8e-236 820.8 715 62.0
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 2.3e-235 819.3 695 63.2
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 1.5e-231 806.6 696 61.8
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 3.4e-231 805.4 696 60.8
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 3.4e-231 805.4 692 59.8
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 3.4e-231 805.4 695 61.9
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 9.8e-231 803.9 698 60.2
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 2.2e-230 802.7 642 65.4
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 3.7e-230 802.0 699 60.4
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 4.9e-230 801.6 618 66.8
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 8.3e-230 800.8 723 58.2
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 1.1e-229 800.4 751 57.3
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 1.1e-229 800.4 713 61.6
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 3.5e-228 795.4 697 60.4
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 7.3e-226 787.7 709 58.3
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 9.5e-226 787.3 748 58.2
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 4.0e-224 781.9 699 59.8
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 6.4e-222 774.6 686 60.2
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 3.2e-221 772.3 701 58.1
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 9.2e-221 770.8 641 62.6
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 3.5e-220 768.8 498 80.5
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 2.3e-219 766.1 692 59.0
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 3.3e-218 762.3 688 59.7
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 1.6e-217 760.0 604 63.1
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.1e-216 757.3 703 59.5
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.8e-216 756.5 659 61.2
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.3e-216 756.1 689 59.9
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.6e-215 752.7 688 59.3
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 4.4e-215 751.9 700 57.6
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 7.5e-215 751.1 690 59.7
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 2.1e-212 743.0 690 58.6
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 4.6e-212 741.9 685 57.2
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 3.0e-211 739.2 690 58.4
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 3.9e-211 738.8 690 58.7
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 1.9e-210 736.5 690 58.6
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 2.5e-210 736.1 690 58.3
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 9.5e-210 734.2 692 58.4
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 7.1e-205 718.0 585 62.2
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 9.2e-205 717.6 487 71.0
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 4.6e-204 715.3 644 59.0
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 1.1e-202 710.7 686 56.3
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 3.4e-199 699.1 1096 41.5
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 9.3e-197 691.0 693 53.7
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 4.6e-196 688.7 729 52.3
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 2.5e-194 682.9 649 55.5
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 7.6e-191 671.4 566 59.9
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 1.1e-189 667.5 593 57.3
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 2.4e-184 649.8 704 51.4
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.5e-183 647.1 667 52.2
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 4.6e-180 635.6 554 57.2
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 3.9e-171 605.9 559 56.5
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 1.2e-159 567.8 402 71.1
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 9.4e-157 558.1 697 45.8
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.7e-150 537.3 702 43.6
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 7.2e-149 531.9 721 42.7
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 3.6e-148 529.6 515 55.3
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 3.6e-148 529.6 703 43.0
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.4e-144 517.7 420 64.5
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 2.5e-141 506.9 449 61.2
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.0e-139 501.5 483 52.2
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 6.5e-134 482.3 698 41.1
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 6.1e-132 475.7 523 47.6
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 6.8e-131 472.2 342 69.6
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 2.7e-127 460.3 563 45.1
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 6.2e-108 396.0 522 41.6
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 2.1e-103 380.9 521 41.5
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 3.5e-103 380.2 512 39.3
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 2.3e-99 367.5 287 64.1
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 2.3e-99 367.5 287 64.1
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 1.5e-98 364.8 287 63.8
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 3.4e-98 363.6 287 63.8
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 4.4e-98 363.2 284 64.1
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 1.3e-97 361.7 517 38.3
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 2.2e-97 360.9 287 63.4
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 4.9e-97 359.8 385 50.1
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 1.1e-96 358.6 284 62.3
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.1e-96 358.6 489 41.1
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.1e-96 358.6 286 62.2
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 9.2e-96 355.5 288 62.8
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 2.1e-95 354.4 287 62.4
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.7e-95 354.0 283 63.6
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.3e-94 351.7 283 62.9
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.3e-94 351.7 519 37.0
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 1.5e-90 338.2 286 60.1
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 2.0e-90 337.8 287 60.6
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 7.6e-90 335.9 283 59.7
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 8.1e-84 315.8 253 64.4
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.4e-83 314.3 424 40.6
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 6.4e-81 306.2 294 57.5
SEGI_17003 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 4.3e-77 293.5 225 62.7
Hma1.2p1_0068F.1_g037320 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 1.3e-76 292.0 217 66.8
Ca_18188_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 2.4e-72 277.7 169 76.3
MD16G1011300 Malus domestica HOM05D003290 ORTHO05D003866 2.9e-65 254.2 172 68.6
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 1.1e-61 242.3 222 58.6
MD13G1014100 Malus domestica HOM05D003290 ORTHO05D003866 2.5e-61 241.1 292 52.1
SEGI_13848 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 1.1e-59 235.7 186 61.8
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 2.4e-59 234.6 295 48.5
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 2.2e-49 201.4 277 36.5
MD16G1011400 Malus domestica HOM05D003290 ORTHO05D003866 9.4e-48 196.1 136 71.3
Haze_10794 Corylus avellana HOM05D003290 ORTHO05D003866 9.4e-40 169.5 204 53.4
Cpa.g.sc2.70 Carica papaya HOM05D003290 ORTHO05D003866 1.6e-39 168.7 209 51.2
CAN.G282.92 Capsicum annuum HOM05D003290 ORTHO05D003866 3.3e-37 161.0 130 70.8
SEGI_28338 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 2.9e-33 147.9 300 38.3
AL1G48790 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 3.2e-32 144.4 126 57.9
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 1.5e-29 135.6 80 77.5
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 7.0e-27 126.7 80 73.8
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 9.4e-24 116.3 80 66.2
Hma1.2p1_0068F.1_g037310 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 2.7e-23 114.8 195 43.6
Aqoxy1G02273 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.5e-21 109.0 122 45.9
Potri.007G100500 Populus trichocarpa HOM05D003290 ORTHO05D003866 5.9e-18 97.1 103 54.4
HanXRQChr13g0400621 Helianthus annuus HOM05D003290 ORTHO05D003866 6.1e-15 87.0 112 48.2
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 3.0e-14 84.7 57 71.9
Sopen00g005880 Solanum pennellii HOM05D003290 ORTHO05D003866 9.1e-11 73.2 117 36.8
Sopen04g009320 Solanum pennellii HOM05D000004 ORTHO05D000002 9.1e-11 73.2 117 36.8
Cre01.g034150 Chlamydomonas reinhardtii HOM05D003290 ORTHO05D003866 1.2e-10 72.8 304 21.7
PRCOL_00005090 Prasinoderma coloniale HOM05D003290 ORTHO05D333888 1.0e-06 59.7 137 28.5


User provided reference genes

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