Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.0e-179 631.7 319 100.0
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.1e-173 613.2 339 92.9
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 2.3e-171 605.5 339 91.4
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.3e-171 605.5 339 91.4
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 5.2e-171 604.4 339 91.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.7e-169 599.4 339 90.3
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.8e-169 598.6 339 90.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.0e-168 594.0 339 88.8
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 2.7e-167 592.0 339 90.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.5e-167 591.3 339 88.2
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 6.5e-166 587.4 339 88.2
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 6.1e-164 580.9 339 87.3
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 2.3e-163 578.9 339 86.7
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 5.2e-163 577.8 339 85.5
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.5e-162 576.2 340 87.1
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.6e-162 575.5 339 87.0
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 7.5e-162 573.9 339 86.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 9.8e-162 573.5 343 85.7
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.2e-161 572.4 339 85.5
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.2e-161 572.4 335 86.9
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.2e-161 572.4 339 86.4
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.8e-161 572.0 339 85.5
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.8e-161 572.0 331 87.9
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 3.7e-161 571.6 339 86.1
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 3.7e-161 571.6 337 86.4
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 4.8e-161 571.2 337 85.2
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 6.3e-161 570.9 339 85.3
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 8.3e-161 570.5 331 86.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 8.3e-161 570.5 339 85.5
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.4e-160 569.7 339 85.0
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 4.1e-160 568.2 339 85.3
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 4.1e-160 568.2 340 85.3
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 4.1e-160 568.2 339 85.3
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.1e-160 568.2 340 85.0
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 5.4e-160 567.8 339 84.4
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 7.0e-160 567.4 339 84.4
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 7.0e-160 567.4 339 85.0
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 9.1e-160 567.0 339 85.3
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.2e-159 566.6 339 84.4
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 1.2e-159 566.6 339 85.0
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.0e-159 565.8 339 85.3
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 2.0e-159 565.8 338 85.8
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.7e-159 565.5 339 84.1
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.5e-159 564.7 339 84.1
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.3e-158 563.1 339 84.1
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 1.3e-158 563.1 333 86.2
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.3e-158 563.1 339 84.1
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.7e-158 562.8 339 84.4
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.3e-158 562.4 333 85.6
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 6.6e-158 560.8 339 83.8
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 6.6e-158 560.8 339 84.1
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 8.6e-158 560.5 340 84.4
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.5e-157 559.7 339 83.8
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.5e-157 559.7 339 83.8
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.5e-157 559.7 339 83.8
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.5e-157 559.7 339 83.5
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.9e-157 559.3 333 85.3
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.5e-157 558.9 340 85.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.5e-157 558.9 340 85.0
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 5.5e-157 557.8 309 92.2
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.2e-157 557.4 340 84.7
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 9.5e-157 557.0 339 83.5
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.2e-156 556.6 333 84.1
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.6e-156 556.2 339 83.8
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 1.6e-156 556.2 338 84.3
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.6e-156 556.2 340 84.1
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 2.1e-156 555.8 338 83.7
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.6e-156 555.1 339 82.3
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.6e-156 555.1 340 84.1
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 3.6e-156 555.1 340 83.8
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 6.1e-156 554.3 342 83.3
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.0e-155 553.5 339 83.5
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.0e-155 553.5 341 84.2
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.4e-155 553.1 339 82.6
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.8e-155 552.7 341 83.0
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 4.0e-155 551.6 381 76.4
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.2e-154 550.1 335 83.3
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.2e-154 550.1 339 81.7
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.5e-154 549.7 333 84.1
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 2.8e-153 545.4 338 82.5
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.7e-153 545.0 326 85.9
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 9.2e-152 540.4 353 79.9
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.2e-151 540.0 339 79.1
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 2.7e-151 538.9 340 81.8
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.0e-150 537.0 309 87.7
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 6.6e-150 534.3 333 79.9
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.1e-149 533.5 328 83.2
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.9e-149 532.7 333 80.5
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 2.5e-149 532.3 333 79.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 2.5e-149 532.3 333 79.3
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 4.3e-149 531.6 337 78.3
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 4.3e-149 531.6 333 79.3
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 5.6e-149 531.2 333 78.7
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 5.6e-149 531.2 333 79.0
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 5.6e-149 531.2 333 79.3
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 5.6e-149 531.2 335 78.8
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.2e-148 530.0 333 79.3
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.2e-148 530.0 338 77.8
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.2e-148 530.0 333 79.0
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.6e-148 529.6 333 78.7
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.6e-148 529.6 377 75.1
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.8e-148 528.9 333 79.0
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 2.8e-148 528.9 333 78.7
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 8.0e-148 527.3 333 78.4
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.4e-147 526.6 314 85.4
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.3e-147 525.8 320 83.8
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 3.1e-147 525.4 339 80.8
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.1e-147 525.4 333 79.3
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.2e-147 524.6 321 84.4
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 8.9e-147 523.9 333 78.1
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 8.9e-147 523.9 333 78.1
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 8.9e-147 523.9 339 77.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.6e-146 522.3 324 79.6
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 5.8e-146 521.2 348 75.6
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 5.8e-146 521.2 333 78.1
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.7e-145 518.5 341 75.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 4.6e-143 511.5 320 80.9
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.7e-142 509.6 343 75.2
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.4e-139 500.0 339 77.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 5.2e-139 498.0 338 72.8
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 8.9e-139 497.3 336 72.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 5.8e-138 494.6 314 78.0
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.3e-137 493.4 335 74.0
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.9e-137 491.5 319 80.9
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.2e-136 487.3 338 72.2
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.5e-135 485.3 338 71.9
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.0e-134 483.8 418 64.8
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.6e-130 469.2 359 68.8
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.5e-125 453.4 271 84.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.4e-123 446.0 296 78.0
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 8.9e-123 444.1 263 86.7
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.4e-122 442.2 263 86.7
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.4e-122 442.2 263 86.7
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 9.3e-120 434.1 316 67.7
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.3e-117 424.5 339 68.7
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 2.1e-116 422.9 339 68.7
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.7e-113 413.3 341 63.6
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 8.7e-110 401.0 216 90.3
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 6.4e-105 384.8 238 81.1
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 3.2e-104 382.5 251 75.7
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 4.3e-101 372.1 311 59.2
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 8.1e-100 367.9 251 75.7
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.3e-92 344.0 245 70.2
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.8e-91 340.1 328 53.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.8e-86 323.6 341 52.8
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.5e-40 168.3 153 61.4
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 4.4e-37 159.5 128 66.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 8.0e-31 138.7 79 83.5
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.6e-26 124.4 74 81.1
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 2.0e-21 107.5 64 81.2
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 2.6e-21 107.1 64 81.2
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 4.1e-19 99.8 180 43.3
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 5.1e-17 92.8 51 88.2
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 6.2e-15 85.9 72 65.3
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.4e-11 73.9 42 78.6
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.3e-09 67.4 60 60.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.3e-09 67.4 60 60.0
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 5.6e-08 62.8 85 44.7
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.1e-06 58.5 84 46.4


User provided reference genes

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