Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.8e-158 560.8 281 100.0
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-88 330.1 169 96.4
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 4.0e-82 308.9 169 89.3
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.2e-81 307.4 169 88.2
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 3.7e-80 302.4 169 87.0
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.8e-79 300.1 169 84.6
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 5.3e-79 298.5 168 86.9
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.7e-77 293.5 169 85.8
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 5.4e-71 271.9 168 74.4
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 3.5e-70 269.2 168 74.4
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.3e-69 267.3 168 73.2
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.9e-68 263.5 168 71.4
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.6e-67 260.4 166 71.7
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 1.6e-67 260.4 167 71.3
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 8.0e-67 258.1 167 69.5
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 8.0e-67 258.1 170 71.2
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.0e-66 257.7 167 70.1
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.8e-66 256.9 168 70.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.8e-66 256.9 168 70.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.8e-66 256.9 168 70.2
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 3.0e-66 256.1 168 70.8
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 4.0e-66 255.8 168 69.6
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 4.0e-66 255.8 168 68.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 5.2e-66 255.4 168 69.6
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.2e-65 254.2 168 67.3
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.5e-65 253.8 168 67.9
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 2.0e-65 253.4 169 70.4
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.6e-65 253.1 172 68.0
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 3.4e-65 252.7 168 71.4
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.4e-65 252.3 167 69.5
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.4e-65 252.3 167 69.5
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 4.4e-65 252.3 206 60.2
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 7.5e-65 251.5 168 68.5
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 9.8e-65 251.1 172 68.0
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 9.8e-65 251.1 168 68.5
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.3e-64 250.8 167 70.1
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.7e-64 250.4 172 67.4
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 2.2e-64 250.0 166 69.9
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 2.2e-64 250.0 167 70.7
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 2.8e-64 249.6 168 67.3
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 3.7e-64 249.2 168 67.9
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.9e-64 248.8 167 67.1
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 4.9e-64 248.8 167 67.1
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 4.9e-64 248.8 168 67.9
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 6.3e-64 248.4 172 64.5
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 6.3e-64 248.4 167 67.7
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 8.3e-64 248.1 168 67.9
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 8.3e-64 248.1 167 65.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 1.1e-63 247.7 168 65.5
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.1e-63 247.7 169 68.6
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.8e-63 246.9 170 68.8
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 1.8e-63 246.9 170 65.9
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 2.4e-63 246.5 170 68.8
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 3.1e-63 246.1 170 65.9
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 4.1e-63 245.7 168 66.1
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 7.0e-63 245.0 168 66.7
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 9.2e-63 244.6 170 65.9
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 1.2e-62 244.2 167 66.5
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.2e-62 244.2 168 66.7
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.0e-62 243.4 167 66.5
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 3.5e-62 242.7 168 67.3
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 5.9e-62 241.9 171 64.3
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 7.8e-62 241.5 169 65.7
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 7.8e-62 241.5 169 68.6
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 7.8e-62 241.5 172 64.5
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 7.8e-62 241.5 168 66.1
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.7e-61 240.4 169 67.5
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 2.9e-61 239.6 171 64.3
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 6.6e-61 238.4 176 63.1
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 6.6e-61 238.4 168 64.3
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 6.6e-61 238.4 167 64.7
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.1e-60 237.7 169 66.9
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.9e-60 236.9 168 63.7
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 3.3e-60 236.1 172 62.2
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.2e-59 234.2 168 63.7
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 3.6e-59 232.6 168 61.9
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 6.1e-59 231.9 166 65.1
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 5.2e-58 228.8 167 59.3
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.2e-57 227.6 196 53.1
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.5e-57 227.3 168 60.7
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.5e-57 227.3 168 59.5
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.6e-57 226.5 167 60.5
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 2.6e-57 226.5 171 61.4
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 2.6e-57 226.5 156 65.4
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.6e-57 226.5 167 61.7
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 3.4e-57 226.1 153 66.7
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.3e-56 224.2 168 63.7
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.8e-55 220.3 167 61.7
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 4.1e-55 219.2 167 61.7
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 4.1e-55 219.2 167 61.7
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.2e-54 217.6 166 59.6
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 2.0e-54 216.9 168 58.9
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 6.0e-54 215.3 167 54.5
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.3e-53 214.2 167 59.3
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.3e-53 214.2 167 59.3
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 3.9e-53 212.6 170 59.4
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 3.9e-53 212.6 167 53.9
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.5e-52 210.7 207 52.7
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.5e-52 210.7 168 56.0
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 1.9e-52 210.3 167 59.3
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.9e-52 210.3 167 59.3
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 3.3e-52 209.5 168 57.1
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 1.2e-51 207.6 168 58.9
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 5.8e-49 198.7 167 56.9
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 9.2e-47 191.4 167 54.5
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 9.2e-47 191.4 167 54.5
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 9.2e-47 191.4 170 49.4
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 5.6e-44 182.2 134 67.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.2e-41 174.5 167 51.5
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 2.6e-41 173.3 117 67.5
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 2.9e-32 143.3 102 61.8
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 7.8e-30 135.2 121 55.4
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.5e-28 130.2 64 92.2
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.2e-27 127.9 79 69.6
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 4.4e-25 119.4 94 55.3
Nitab4.5_0011202g0010 Nicotiana tabacum HOM05D000768 ORTHO05D000665 1.6e-19 100.9 138 47.8
Nitab4.5_0010546g0020 Nicotiana tabacum HOM05D000768 ORTHO05D000665 3.2e-15 86.7 177 37.3
Nitab4.5_0000580g0320 Nicotiana tabacum HOM05D000768 ORTHO05D000665 6.7e-13 79.0 179 38.0
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.6e-11 74.3 90 47.8
Nitab4.5_0001981g0060 Nicotiana tabacum HOM05D000768 ORTHO05D000665 2.4e-10 70.5 173 34.7
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 2.0e-09 67.4 42 66.7
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 4.9e-08 62.8 79 41.8
Nitab4.5_0000590g0040 Nicotiana tabacum HOM05D000768 ORTHO05D000665 4.9e-08 62.8 59 49.2
Nitab4.5_0002559g0030 Nicotiana tabacum HOM05D000768 ORTHO05D000665 3.2e-07 60.1 173 31.8


User provided reference genes

Program Settings