Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.3e-111 405.2 295 100.0
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.9e-87 326.6 300 89.7
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 8.7e-56 221.5 300 70.3
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 9.3e-50 201.4 264 76.1
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.0e-48 198.0 301 70.1
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.5e-47 194.1 299 66.6
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 5.7e-47 192.2 296 68.6
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.6e-46 190.7 296 68.6
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.2e-46 190.3 281 66.9
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.4e-45 187.6 294 68.0
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 2.0e-44 183.7 285 63.9
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 3.4e-44 183.0 277 64.3
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.5e-44 182.6 301 64.1
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 7.7e-44 181.8 277 64.3
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.7e-43 180.6 309 66.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.7e-43 180.6 311 65.3
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.7e-43 180.6 309 66.7
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.2e-43 180.3 300 63.3
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.2e-43 180.3 285 65.6
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.2e-43 180.3 297 65.7
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.0e-43 179.1 311 65.3
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.0e-43 179.1 296 64.5
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.5e-43 178.7 311 65.3
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 6.5e-43 178.7 271 66.4
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 8.5e-43 178.3 279 65.2
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.4e-42 177.6 280 62.1
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.4e-42 177.6 281 66.5
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 3.2e-42 176.4 275 68.7
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.5e-42 175.6 315 63.2
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 5.5e-42 175.6 311 62.4
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 3.6e-41 172.9 290 63.4
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 6.1e-41 172.2 275 67.6
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 6.1e-41 172.2 303 61.7
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 7.9e-41 171.8 269 67.7
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.0e-40 171.4 270 68.5
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.8e-40 170.6 277 66.4
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.9e-40 169.5 298 61.1
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.9e-40 169.5 272 63.6
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.1e-40 169.1 280 65.4
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 5.1e-40 169.1 204 54.9
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 6.7e-40 168.7 308 64.3
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 2.0e-39 167.2 298 54.7
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.5e-39 166.8 297 60.9
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.3e-39 166.0 268 66.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 4.3e-39 166.0 268 66.8
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 7.4e-39 165.2 298 60.7
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.7e-38 164.1 277 67.9
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 4.8e-38 162.5 308 61.7
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 6.3e-38 162.2 216 52.3
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.1e-37 159.8 268 66.4
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 3.1e-37 159.8 306 61.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.5e-36 157.5 192 58.3
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.0e-36 157.1 190 55.8
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.9e-36 155.6 278 63.7
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.9e-36 155.6 307 59.9
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 7.7e-36 155.2 272 65.8
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.3e-35 154.5 282 52.1
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.3e-35 154.5 268 64.2
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.3e-35 154.5 284 62.7
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.7e-35 154.1 301 63.5
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.2e-35 153.7 190 55.8
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 2.2e-35 153.7 307 59.0
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.8e-35 152.9 283 64.7
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 6.5e-35 152.1 315 61.3
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.5e-34 150.2 268 64.2
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 3.2e-34 149.8 300 61.7
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 4.2e-34 149.4 246 67.1
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.5e-34 149.1 203 53.2
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.2e-33 147.9 299 46.8
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-33 147.5 295 56.3
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.1e-33 147.1 274 62.0
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 4.7e-33 146.0 305 56.1
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.8e-32 144.1 318 57.5
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.3e-32 143.7 278 62.9
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 3.0e-32 143.3 298 55.0
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 3.0e-32 143.3 274 62.0
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.9e-32 142.9 260 64.2
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.7e-32 142.1 192 49.5
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.6e-31 140.2 312 55.4
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.6e-31 140.2 284 62.7
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 4.4e-31 139.4 203 53.2
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 4.4e-31 139.4 275 64.0
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 5.7e-31 139.0 308 56.8
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 7.4e-31 138.7 265 64.9
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.3e-30 137.9 282 62.4
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.2e-30 137.1 321 59.2
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.2e-30 137.1 275 62.5
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 3.7e-30 136.3 289 61.2
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 4.8e-30 136.0 293 58.7
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.4e-29 133.7 296 60.5
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.1e-29 133.3 318 59.7
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 4.1e-29 132.9 222 44.1
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.1e-29 131.7 219 73.1
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.5e-28 129.8 272 63.2
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.5e-28 129.8 282 63.5
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 4.5e-28 129.4 295 51.2
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 5.9e-28 129.0 283 62.9
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 5.9e-28 129.0 289 60.9
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.0e-27 128.3 191 50.3
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.0e-27 125.9 269 60.6
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.5e-27 125.6 278 58.6
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 8.5e-27 125.2 284 56.7
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.1e-26 124.8 284 58.8
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 4.2e-26 122.9 276 57.2
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 5.5e-26 122.5 217 50.2
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.2e-25 121.3 179 49.2
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.1e-25 120.6 283 56.2
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.1e-25 120.6 297 57.6
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.7e-25 120.2 208 46.6
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.6e-25 119.8 271 57.9
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.6e-25 119.8 279 58.4
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 4.7e-25 119.4 288 58.7
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 4.7e-25 119.4 214 44.4
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.7e-25 119.4 286 56.3
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 6.1e-25 119.0 134 66.4
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.0e-24 118.2 282 57.8
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.0e-24 118.2 280 56.8
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.8e-24 117.5 284 58.1
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.0e-24 116.7 283 56.2
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.0e-24 116.7 271 50.6
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 5.2e-24 115.9 272 59.2
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 1.5e-23 114.4 270 54.4
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.6e-23 113.6 292 57.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.6e-23 113.6 165 51.5
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.6e-23 113.6 281 55.2
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 3.3e-23 113.2 310 55.2
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 7.4e-23 112.1 284 56.0
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 7.4e-23 112.1 284 56.0
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 7.4e-23 112.1 284 56.0
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 9.7e-23 111.7 272 55.1
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 2.2e-22 110.5 274 53.6
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.2e-22 110.5 284 56.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.2e-22 110.5 274 53.6
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.3e-22 109.0 274 46.0
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.3e-22 109.0 274 46.0
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.3e-22 109.0 265 52.8
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 8.2e-22 108.6 283 56.9
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.4e-21 107.8 284 55.3
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.4e-21 107.8 274 58.0
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 3.1e-21 106.7 272 56.6
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 4.1e-21 106.3 278 54.7
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 9.1e-21 105.1 284 55.3
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.6e-20 104.4 257 61.5
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.6e-20 103.6 183 41.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.5e-20 103.2 286 54.9
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.3e-19 101.3 129 57.4
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 5.0e-19 99.4 298 45.0
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 3.2e-18 96.7 296 40.5
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.1e-17 94.0 276 53.6
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.7e-17 93.6 168 76.2
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.7e-17 92.8 212 40.1
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 8.0e-17 92.0 192 37.0
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.8e-16 90.9 191 39.8
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 3.0e-16 90.1 314 49.7
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 8.3e-14 82.0 295 50.2
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 3.1e-13 80.1 300 40.3
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 5.3e-13 79.3 228 42.1
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 4.2e-10 69.7 264 49.2
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.7e-09 66.2 185 36.2
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 8.0e-09 65.5 38 81.6
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.4e-08 64.7 105 46.7
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 4.0e-08 63.2 79 55.7
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 8.8e-08 62.0 269 45.7
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.5e-07 61.2 119 46.2
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.5e-07 58.9 72 59.7
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.7e-06 57.8 278 32.7
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 6.3e-06 55.8 38 68.4
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 6.3e-06 55.8 173 63.6


User provided reference genes

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