Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 9.6e-250 866.3 420 100.0
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.4e-203 713.0 359 97.5
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 4.1e-192 674.9 409 81.7
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 3.3e-181 638.6 358 86.0
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.8e-180 635.6 432 75.0
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 4.7e-180 634.8 358 84.9
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.0e-175 619.4 354 82.8
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.8e-172 609.0 351 82.1
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 4.7e-172 608.2 349 82.2
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.0e-166 589.0 377 74.0
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 3.9e-166 588.6 354 79.1
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 6.6e-166 587.8 381 74.3
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.5e-165 585.9 367 77.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.1e-163 578.9 405 69.9
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.9e-163 577.4 350 77.7
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 8.9e-163 577.4 348 79.0
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.2e-162 577.0 386 73.3
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 3.4e-162 575.5 358 76.5
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 6.4e-161 571.2 381 71.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.1e-160 567.8 355 75.2
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.6e-159 566.6 350 78.3
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.1e-159 566.2 347 77.8
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.3e-158 563.5 352 76.1
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.7e-158 563.1 405 68.6
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.7e-158 563.1 405 68.6
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.3e-158 562.8 358 75.1
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-157 560.1 350 76.9
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.5e-157 560.1 351 76.1
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.5e-157 559.3 353 74.8
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.3e-157 558.5 354 75.1
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.3e-157 558.5 357 75.1
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.6e-157 558.1 371 74.7
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 9.5e-157 557.4 350 76.9
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 9.5e-157 557.4 357 75.1
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.8e-156 555.8 358 74.0
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 8.1e-156 554.3 371 73.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 8.1e-156 554.3 378 72.5
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.1e-155 553.9 349 75.6
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.4e-155 553.5 349 76.5
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.8e-155 553.1 362 74.6
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.5e-154 550.1 350 76.6
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.5e-154 550.1 305 84.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.4e-154 548.5 349 74.5
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 5.8e-154 548.1 364 73.9
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 5.8e-154 548.1 325 78.2
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 9.9e-154 547.4 362 74.3
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.3e-153 547.0 350 74.6
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 4.9e-153 545.0 349 74.5
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.9e-153 545.0 357 74.2
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.4e-152 541.6 411 65.5
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 9.2e-152 540.8 349 73.9
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.6e-151 540.0 351 74.1
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.7e-150 536.6 357 72.8
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.7e-150 536.6 401 67.3
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 6.6e-150 534.6 364 71.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 6.6e-150 534.6 412 64.8
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 6.6e-150 534.6 351 72.9
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.5e-149 533.5 402 66.2
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.5e-149 532.7 369 71.5
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 3.3e-149 532.3 358 72.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.6e-148 528.9 355 72.4
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 4.7e-148 528.5 358 71.5
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 4.7e-148 528.5 344 73.8
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 8.1e-148 527.7 387 67.7
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.1e-147 527.3 326 77.3
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.4e-147 526.2 366 71.0
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.1e-147 525.8 374 69.5
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.9e-147 524.6 359 73.3
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.4e-146 521.9 359 72.1
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 9.9e-146 520.8 350 73.1
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.3e-145 520.4 405 65.2
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-145 519.6 303 80.2
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.4e-144 516.2 350 72.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 4.2e-144 515.4 356 68.3
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.1e-143 513.1 354 71.5
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.7e-143 512.7 365 69.0
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 8.7e-142 507.7 372 66.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.1e-141 507.3 334 73.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.5e-141 506.9 305 78.7
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-140 503.4 359 65.2
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-140 503.4 363 68.0
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 3.6e-140 502.3 349 67.9
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.6e-140 502.3 354 69.5
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 6.2e-140 501.5 351 66.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 8.1e-140 501.1 384 64.8
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.0e-138 496.5 350 66.0
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.4e-138 495.7 388 63.9
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 7.6e-138 494.6 348 68.7
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 9.9e-138 494.2 276 84.1
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 1.3e-137 493.8 316 74.7
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.7e-137 493.4 345 66.4
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.7e-137 493.4 354 64.7
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.4e-137 491.1 303 76.6
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.9e-136 490.0 345 67.0
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.4e-136 489.6 359 64.1
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.4e-136 488.4 354 64.1
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 7.1e-136 488.0 353 64.0
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.1e-135 486.5 360 65.8
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 6.0e-135 485.0 345 65.5
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.0e-134 482.6 351 65.0
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.5e-133 479.6 312 74.4
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 5.6e-133 478.4 350 63.7
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.8e-132 476.1 338 69.8
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.8e-131 473.4 361 63.4
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.4e-131 473.0 328 69.5
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 4.0e-131 472.2 328 69.2
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 3.4e-130 469.2 328 70.1
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.9e-129 466.1 413 57.4
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 6.4e-129 464.9 304 72.0
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 2.1e-127 459.9 330 64.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.7e-127 459.5 263 81.0
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.3e-125 452.2 349 63.0
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 8.2e-124 448.0 329 67.2
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-120 436.8 328 65.5
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 5.1e-118 428.7 248 82.3
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.1e-115 419.1 403 54.6
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.3e-110 404.1 250 72.4
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 3.0e-110 402.9 477 45.9
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.7e-108 396.0 221 84.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 6.3e-108 395.2 243 76.5
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 2.4e-107 393.3 336 60.7
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.7e-105 387.1 384 51.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 8.5e-105 384.8 386 53.9
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-104 384.0 260 73.1
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 4.7e-103 379.0 383 55.1
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.0e-102 377.9 251 73.3
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 5.1e-102 375.6 381 52.0
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 3.1e-99 366.3 260 68.8
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.6e-98 363.2 206 82.0
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 4.5e-98 362.5 263 69.6
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.2e-96 356.3 410 47.8
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.6e-95 354.0 290 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.3e-94 350.1 359 50.4
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 6.7e-94 348.6 297 60.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.5e-93 347.4 287 62.7
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 5.7e-93 345.5 349 51.3
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.1e-91 341.3 298 55.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 3.2e-88 329.7 239 65.7
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.9e-81 306.6 302 54.0
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.8e-81 306.2 197 74.6
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 4.2e-80 302.8 230 65.7
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.2e-80 302.0 193 75.6
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 4.4e-77 292.7 192 68.2
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-75 287.7 332 50.6
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 3.1e-75 286.6 275 49.5
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.6e-73 278.5 193 71.0
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.0e-65 255.0 196 65.3
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 5.8e-61 239.2 134 82.8
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.1e-54 218.4 166 63.9
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.8e-53 212.6 337 42.7
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.9e-52 210.3 126 76.2
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 9.5e-48 195.3 325 41.5
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 4.4e-45 186.4 212 52.8
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 6.4e-44 182.6 115 75.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.4e-43 180.6 347 32.0
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.8e-39 167.2 223 37.7
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 8.1e-39 165.6 156 50.6
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 8.9e-38 162.2 302 30.1
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 7.8e-34 149.1 89 75.3
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 7.8e-26 122.5 207 33.3
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 4.2e-19 100.1 96 55.2
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.4e-19 99.8 68 66.2
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 5.6e-16 89.7 69 58.0
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.3e-15 88.6 69 58.0
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.4e-14 84.3 77 53.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 2.0e-13 81.3 49 73.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.6e-13 79.3 40 92.5
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.1e-11 75.5 73 49.3
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 1.1e-08 65.5 49 61.2
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.8e-07 60.8 53 52.8
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.4e-06 58.5 53 50.9
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 3.1e-06 57.4 48 56.2


User provided reference genes

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