Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.2e-275 952.6 486 100.0
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 6.5e-250 867.1 460 95.9
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 2.7e-227 792.0 460 86.7
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.1e-225 786.6 460 86.3
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.0e-211 739.2 461 83.7
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 8.3e-205 717.2 462 80.7
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 5.4e-204 714.5 462 80.5
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 7.6e-190 667.5 461 73.5
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.6e-184 649.8 461 70.9
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.5e-177 625.9 462 67.1
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 2.8e-176 622.5 461 66.6
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 8.1e-176 620.9 462 66.7
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.4e-172 610.1 462 66.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 3.0e-170 602.4 460 65.0
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.5e-169 599.4 461 64.9
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 4.8e-168 595.1 431 69.1
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 3.4e-166 589.0 497 62.6
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 3.8e-165 585.5 462 62.6
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 8.4e-165 584.3 457 61.9
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.9e-164 583.2 462 63.4
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.6e-163 580.1 462 62.3
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 3.0e-162 575.9 462 63.2
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 8.7e-162 574.3 462 61.5
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.1e-161 573.9 463 61.3
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.7e-161 571.6 452 63.1
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.1e-160 569.7 462 61.7
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 5.9e-158 561.6 451 62.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.0e-157 560.8 452 63.5
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 2.2e-157 559.7 454 60.8
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.8e-157 558.9 463 60.0
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 6.5e-157 558.1 450 62.2
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 8.5e-157 557.8 452 60.8
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.2e-155 553.9 445 62.2
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 2.7e-155 552.7 514 56.2
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 3.6e-155 552.4 478 59.6
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.0e-154 550.8 451 61.0
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.8e-154 550.1 462 59.5
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 8.7e-154 547.7 452 60.2
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 8.7e-154 547.7 452 60.2
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.1e-153 547.4 462 58.4
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.9e-153 546.6 482 58.9
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.6e-152 543.5 453 60.9
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.6e-152 543.5 464 58.4
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 3.7e-152 542.3 462 60.0
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 4.8e-152 542.0 444 60.4
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 6.3e-152 541.6 462 59.5
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.1e-151 540.8 452 59.5
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 3.1e-151 539.3 448 59.4
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.2e-150 537.3 448 60.3
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.5e-150 537.0 448 60.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 2.0e-150 536.6 462 58.2
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 3.4e-150 535.8 462 57.4
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 5.9e-150 535.0 462 58.2
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 5.9e-150 535.0 464 58.6
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 1.0e-149 534.3 463 57.7
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.3e-149 533.9 459 58.6
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 3.2e-148 529.3 463 58.7
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 9.4e-148 527.7 463 58.7
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 3.6e-147 525.8 454 58.1
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.4e-146 523.9 465 55.7
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 8.8e-146 521.2 462 57.1
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.6e-145 519.6 450 57.8
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 4.4e-145 518.8 452 55.8
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.7e-144 516.9 466 55.2
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.8e-144 516.2 450 57.3
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.8e-144 516.2 453 58.5
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 2.8e-144 516.2 494 55.5
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.7e-144 515.8 466 54.9
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 3.7e-144 515.8 452 56.0
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.3e-144 515.0 454 59.0
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.4e-143 513.8 455 55.8
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.1e-143 512.3 467 55.0
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.1e-143 512.3 484 56.6
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 4.1e-143 512.3 462 55.6
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 6.9e-143 511.5 466 54.5
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 9.1e-143 511.1 453 55.2
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.5e-142 510.4 452 55.5
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 4.5e-142 508.8 466 54.1
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.9e-140 503.4 452 54.2
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 3.2e-140 502.7 464 57.3
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 7.2e-140 501.5 457 58.2
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 2.7e-139 499.6 463 57.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 6.1e-139 498.4 464 56.9
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 7.9e-139 498.0 463 54.9
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 3.9e-138 495.7 464 54.3
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 5.2e-138 495.4 467 56.7
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 9.1e-135 484.6 467 55.9
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.5e-134 482.6 431 57.3
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.9e-134 481.9 432 57.2
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.7e-133 480.3 466 54.1
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 2.2e-133 479.9 464 55.0
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 9.4e-132 474.6 495 52.1
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 5.7e-129 465.3 422 56.2
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.8e-128 463.0 466 52.1
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.1e-127 459.1 445 54.2
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.5e-126 455.7 466 51.5
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.8e-122 443.7 420 53.6
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.0e-122 443.0 455 52.1
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 4.8e-120 435.6 446 50.7
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.3e-120 435.3 456 48.7
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 6.5e-117 425.2 460 48.9
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 7.5e-113 411.8 454 47.1
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.3e-109 401.0 415 52.5
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.0e-106 391.3 449 48.1
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 5.6e-100 369.0 298 62.1
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.7e-96 357.5 423 44.0
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 3.2e-95 353.2 527 41.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 8.1e-91 338.6 366 48.6
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 8.1e-91 338.6 366 48.6
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 7.8e-86 322.0 491 38.3
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 3.6e-83 313.2 276 57.6
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.4e-79 299.3 324 54.0
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.1e-78 297.4 444 39.4
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.2e-75 288.1 459 40.1
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.3e-64 251.5 495 33.7
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.6e-62 244.6 500 33.6
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.8e-48 196.8 192 55.2
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.0e-45 188.7 358 35.2
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 3.0e-45 187.2 400 31.2
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 3.4e-41 173.7 163 55.8
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.3e-40 171.8 163 55.2
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.5e-33 146.7 126 51.6
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.5e-33 146.7 126 51.6
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 4.5e-33 146.7 373 28.2
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 2.2e-32 144.4 109 62.4
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.9e-32 144.1 422 26.3
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.5e-32 142.9 123 51.2
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.5e-32 142.5 105 60.0
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.4e-31 141.7 443 25.5
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 2.1e-30 137.9 123 56.9
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.1e-28 132.1 217 40.1
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.0e-24 119.0 288 29.2
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.6e-17 95.1 121 39.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.9e-15 88.2 170 33.5
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 5.5e-15 86.7 71 57.7
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 8.8e-13 79.3 72 52.8
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 8.2e-11 72.8 90 48.9
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.4e-10 72.0 90 48.9
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.3e-08 65.5 42 73.8
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.9e-08 64.3 39 66.7
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 8.5e-08 62.8 38 65.8


User provided reference genes

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