Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 2054.3 1083 100.0
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1632.5 1084 83.0
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1632.1 1048 85.2
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1427.2 1055 73.2
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1406.7 1007 76.8
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1395.6 1059 70.7
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1385.9 1035 73.4
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1380.9 1090 68.7
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 1058 72.4
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1375.1 1021 74.6
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1366.7 1032 72.9
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1365.9 1041 71.2
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1358.2 1050 71.0
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1358.2 931 76.6
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1356.3 1035 72.5
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1353.2 1071 69.6
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1349.0 1049 70.5
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1344.7 1053 70.6
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1343.9 1035 72.1
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1338.9 1054 70.1
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1338.6 1068 69.4
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1332.0 1024 70.6
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1331.2 1070 68.8
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1330.1 1000 73.5
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1328.9 1034 70.0
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1326.6 1053 68.9
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1325.1 1029 71.7
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1323.1 1065 68.4
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1320.8 941 73.3
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1319.7 1024 70.4
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1318.5 1024 70.3
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1315.4 1050 69.7
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1313.5 1033 69.3
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1313.5 1035 69.7
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1311.6 1034 69.4
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1311.2 1025 69.4
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1311.2 1031 70.0
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1310.0 1070 67.5
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1308.1 1063 68.9
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1307.0 1063 66.8
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1302.3 1034 69.4
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1300.0 1067 68.2
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1297.3 1058 69.0
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1297.0 1031 68.8
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1295.8 1016 71.3
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1295.0 1018 69.3
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1293.5 1006 69.5
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1291.9 1051 68.4
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1287.7 1078 66.4
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1286.6 1071 66.8
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1285.8 1074 68.9
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1285.0 1054 67.9
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1277.3 1035 68.8
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1275.4 1058 66.6
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1272.7 1079 66.6
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1271.9 1051 66.9
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1269.2 788 80.5
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1267.7 1072 66.0
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1266.1 1009 68.3
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1263.1 1011 68.2
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1260.4 966 71.2
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1258.8 1002 67.9
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1257.3 1034 66.9
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1257.3 872 74.0
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1255.4 1155 62.3
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1254.2 788 78.9
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1254.2 788 78.9
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1253.8 788 78.9
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1243.0 1065 66.2
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1239.9 1067 65.5
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1238.0 1060 65.4
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1231.5 923 68.4
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1230.7 1030 67.9
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1230.3 1026 66.6
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1227.2 1006 67.3
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1226.1 1010 66.2
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1225.7 1024 67.8
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1221.8 923 68.0
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1219.9 923 68.3
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1213.0 1078 64.1
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1212.2 923 67.5
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1212.2 923 67.5
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1211.1 923 67.4
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1211.1 923 67.4
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1206.0 1055 65.4
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1201.4 1042 66.2
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1199.5 784 76.8
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1194.9 956 66.0
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1187.6 643 93.0
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1185.2 643 92.8
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1176.4 1058 61.8
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1167.9 1051 62.4
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1167.1 1049 62.6
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1163.3 1186 58.7
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1154.0 1067 61.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1144.4 1032 62.8
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1134.0 1148 57.8
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1129.8 1080 61.1
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1096.3 898 65.0
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 7.6e-307 1057.4 1056 56.4
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.6e-304 1049.7 640 84.5
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 1.9e-294 1016.1 788 64.3
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 4.8e-285 984.9 918 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 4.5e-275 951.8 788 59.9
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 8.5e-274 947.6 1048 56.2
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.2e-248 864.0 721 59.9
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 2.7e-248 862.8 609 71.9
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 6.8e-239 831.6 524 79.6
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 5.0e-218 762.3 652 62.1
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.3e-185 652.9 590 58.8
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.5e-142 511.5 504 64.3
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.9e-132 478.0 398 61.8
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 3.0e-130 470.7 402 74.6
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.5e-126 457.2 271 82.7
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.7e-117 428.3 370 57.3
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 4.2e-116 423.7 401 69.6
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.7e-99 367.1 403 53.1
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.6e-91 342.0 257 69.6
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.7e-88 332.0 254 68.5
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.4e-87 327.0 300 59.7
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-79 302.8 207 74.9
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 3.9e-69 267.7 890 27.4
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.0e-65 255.4 277 52.3
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 4.2e-63 247.7 187 65.8
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-61 241.1 134 85.1
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.1e-58 233.0 161 68.9
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 5.3e-58 230.7 906 25.6
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-54 219.5 145 72.4
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 3.0e-45 188.3 99 88.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.6e-41 175.3 100 81.0
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.2e-40 172.2 108 76.9
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 1.4e-39 169.5 248 39.9
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.6e-38 166.0 139 61.9
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 3.1e-34 151.8 125 63.2
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.9e-34 150.6 119 61.3
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 2.9e-32 145.2 89 79.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.0e-32 144.4 518 27.2
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 3.2e-31 141.7 261 38.7
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 2.0e-28 132.5 94 77.7
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 4.4e-28 131.3 173 44.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.3e-27 129.8 225 39.1
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 8.2e-27 127.1 225 38.7
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 4.1e-26 124.8 158 50.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-25 122.5 161 45.3
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.2e-23 114.8 108 61.1
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.2e-23 114.8 108 61.1
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.2e-23 114.8 108 61.1
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 7.4e-20 104.0 79 67.1
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.2e-19 100.5 67 73.1
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-18 99.8 60 78.3
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-17 96.7 62 79.0
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.0e-17 95.9 159 39.0
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.9e-17 94.4 79 58.2
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 7.2e-15 87.4 51 80.4
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-13 82.8 61 60.7
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.8e-10 72.8 275 32.7
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 7.7e-09 67.4 75 48.0
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 7.7e-09 67.4 77 46.8
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 2.2e-08 65.9 77 45.5
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.2e-06 60.1 53 62.3
SEGI_17061 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-06 60.1 44 61.4
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 1.6e-06 59.7 87 41.4
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 2.1e-06 59.3 156 26.9
BcaNung03874 Brassica carinata HOM05D001509 ORTHO05D001361 2.7e-06 58.9 167 26.9
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 2.7e-06 58.9 51 52.9
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.6e-06 58.5 38 73.7


User provided reference genes

Program Settings