Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.4e-167 590.9 292 100.0
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.4e-159 565.5 303 93.1
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.1e-150 535.8 292 91.1
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.3e-149 533.1 292 91.1
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 5.8e-145 517.7 330 79.7
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.5e-134 481.9 291 80.8
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.1e-133 478.0 285 82.5
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.6e-126 454.9 287 76.7
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.0e-125 453.8 285 76.8
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.0e-125 452.2 285 76.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.3e-124 448.7 287 75.3
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 6.9e-122 441.0 286 72.4
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.5e-121 439.9 285 71.9
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 2.6e-121 439.1 323 69.3
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 3.4e-121 438.7 286 74.5
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.9e-121 438.0 286 75.2
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.9e-121 438.0 286 75.2
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.9e-121 438.0 285 74.4
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 2.9e-120 435.6 286 73.8
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 6.5e-120 434.5 286 73.8
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.1e-119 433.7 286 71.0
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.4e-119 433.3 283 72.4
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.9e-119 433.0 285 72.6
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 2.5e-119 432.6 284 71.5
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 9.4e-119 430.6 285 74.0
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.2e-118 430.3 286 72.0
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.2e-118 430.3 286 72.4
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.1e-118 429.5 286 72.7
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.1e-118 429.5 286 72.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.7e-118 429.1 285 72.3
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.6e-118 428.7 286 73.4
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 3.6e-118 428.7 286 73.8
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.6e-118 428.3 287 72.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 6.1e-118 427.9 296 72.3
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 6.1e-118 427.9 286 74.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 7.9e-118 427.6 285 74.4
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 7.9e-118 427.6 285 71.9
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.0e-117 427.2 286 72.0
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.3e-117 426.0 285 71.9
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.9e-117 425.2 280 70.4
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 8.8e-117 424.1 253 81.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.1e-116 423.7 284 72.5
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.5e-116 423.3 286 71.3
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.5e-116 423.3 285 72.3
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.5e-116 423.3 286 72.0
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 3.3e-116 422.2 285 72.3
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 3.3e-116 422.2 286 71.3
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 7.4e-116 421.0 287 71.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 7.4e-116 421.0 286 71.3
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 9.7e-116 420.6 292 70.5
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.7e-115 419.9 288 69.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.7e-115 419.9 285 73.7
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.7e-115 419.9 287 71.4
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 2.2e-115 419.5 286 72.0
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 2.2e-115 419.5 285 69.8
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.8e-115 418.3 286 69.9
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 6.3e-115 417.9 287 71.4
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 8.2e-115 417.5 287 71.1
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.4e-114 416.8 286 69.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.4e-114 416.8 286 70.3
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 2.4e-114 416.0 289 70.6
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.1e-114 415.2 286 69.2
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 5.3e-114 414.8 283 71.7
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.9e-114 414.5 289 68.9
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 6.9e-114 414.5 289 68.9
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 6.9e-114 414.5 285 70.5
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 9.1e-114 414.1 286 70.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.5e-113 413.3 286 69.6
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.5e-113 413.3 284 69.7
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 4.5e-113 411.8 286 68.5
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 7.7e-113 411.0 286 69.2
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.7e-113 411.0 286 68.9
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.3e-112 410.2 286 69.9
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-112 409.8 286 71.0
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.2e-112 409.5 289 69.9
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.9e-112 409.1 285 69.1
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.9e-112 409.1 326 63.8
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.9e-112 409.1 326 63.8
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.4e-111 406.8 286 67.8
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.5e-111 406.0 286 67.8
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 2.5e-111 406.0 286 67.8
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.5e-111 406.0 286 69.2
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 4.2e-111 405.2 286 68.9
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.2e-111 405.2 254 76.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 9.4e-111 404.1 286 67.5
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 2.1e-110 402.9 286 67.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 3.6e-110 402.1 284 66.5
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 3.6e-110 402.1 286 66.4
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 7.9e-110 401.0 294 68.7
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 5.2e-109 398.3 285 67.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.1e-108 397.1 294 67.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 3.3e-108 395.6 287 66.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 7.4e-108 394.4 288 68.4
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 2.2e-107 392.9 283 69.3
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.7e-107 392.1 302 65.6
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.8e-107 391.7 285 68.8
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.4e-106 389.4 259 72.2
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 5.3e-106 388.3 239 76.6
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.6e-105 386.7 254 74.0
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 2.0e-105 386.3 254 73.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.2e-103 378.6 286 67.1
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 6.7e-101 371.3 289 65.7
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 4.4e-100 368.6 254 68.5
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 7.5e-100 367.9 284 64.8
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.2e-99 366.3 285 62.8
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 6.3e-99 364.8 288 63.5
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.4e-98 363.6 285 63.5
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.0e-93 345.5 227 72.2
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 6.8e-93 344.7 279 61.3
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 8.8e-93 344.4 283 60.8
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 6.5e-88 328.2 241 66.8
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 4.7e-86 322.0 256 63.7
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.1e-86 321.6 208 75.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.0e-85 320.9 288 56.2
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.7e-83 313.5 293 56.7
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.6e-81 307.0 283 56.5
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.5e-79 299.7 282 52.1
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.2e-78 297.4 288 55.2
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.1e-78 296.6 228 68.4
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.3e-75 287.3 169 82.8
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 2.2e-75 286.6 245 58.8
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.0e-64 251.1 185 67.0
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 3.0e-56 223.0 297 45.5
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.9e-47 193.7 130 69.2
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 5.6e-47 192.2 262 42.4
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.9e-43 179.9 272 36.4
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.1e-38 163.7 150 55.3
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-38 163.7 152 57.2
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.2e-36 157.9 152 53.3
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 7.6e-36 155.2 150 53.3
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.2e-33 147.9 82 86.6
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.3e-32 144.4 137 54.0
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 2.1e-30 137.1 169 47.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.8e-30 136.7 263 32.3
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.7e-30 136.3 91 79.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 4.8e-30 136.0 113 54.9
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.9e-27 126.7 379 26.9
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 1.3e-24 117.9 93 64.5
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 5.1e-24 115.9 99 56.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.4e-23 112.1 74 70.3
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 7.6e-20 102.1 213 36.6
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.3e-18 95.1 60 76.7
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 2.7e-17 93.6 112 45.5
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 5.1e-16 89.4 61 62.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.3e-15 86.7 72 58.3
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 9.7e-15 85.1 87 49.4
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.7e-15 85.1 65 63.1
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.8e-14 83.6 56 71.4
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 3.7e-14 83.2 87 49.4
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.8e-14 82.8 83 51.8
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.8e-14 82.8 83 51.8
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 9.0e-13 78.6 186 30.1
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-12 77.8 82 46.3
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.6e-12 77.0 82 46.3
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.6e-12 77.0 82 46.3
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 3.4e-12 76.6 122 43.4
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.4e-12 76.6 82 45.1
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.5e-10 70.5 42 81.0
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 2.5e-10 70.5 47 70.2
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 2.7e-09 67.0 47 66.0
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 6.1e-09 65.9 43 69.8
Lsat_1_v5_gn_5_116521 Lactuca sativa HOM05D004481 ORTHO05D233680 2.2e-06 57.4 82 43.9


User provided reference genes

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