Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 0.0e+00 1289.2 670 100.0
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 0.0e+00 1185.6 674 93.2
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 3.2e-263 911.8 710 72.3
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 2.1e-259 899.0 710 71.7
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.2e-257 893.3 710 71.3
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.7e-253 879.4 685 72.8
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.8e-120 437.6 742 41.2
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.9e-119 434.1 599 47.6
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.4e-116 423.3 703 43.8
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.0e-115 421.8 784 41.1
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 7.2e-114 415.6 701 43.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 8.7e-112 408.7 764 39.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 9.0e-109 398.7 691 43.4
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.0e-107 392.9 664 42.8
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.7e-99 367.9 691 40.8
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.2e-99 367.5 603 45.3
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.6e-97 361.3 743 38.0
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 2.3e-96 357.5 755 37.9
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.0e-95 354.4 700 40.0
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 8.2e-94 349.0 734 36.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 4.1e-93 346.7 718 39.4
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 3.2e-90 337.0 630 42.4
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 9.4e-90 335.5 725 37.2
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.2e-89 335.1 735 37.8
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.1e-89 334.3 725 38.6
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 4.7e-89 333.2 679 38.4
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.0e-88 332.0 726 38.0
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.0e-88 332.0 726 38.0
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 2.3e-88 330.9 755 35.6
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.5e-87 328.2 766 36.0
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-87 327.8 742 36.5
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 3.7e-86 323.6 703 36.4
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 4.8e-86 323.2 671 38.6
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 8.2e-86 322.4 722 38.4
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.1e-85 322.0 668 39.1
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.4e-85 320.9 686 37.8
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 7.0e-85 319.3 662 38.8
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 2.7e-84 317.4 725 37.4
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.5e-84 316.6 763 35.1
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 5.9e-84 316.2 504 45.4
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.3e-83 315.1 764 36.0
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.7e-83 314.7 679 40.2
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 2.2e-83 314.3 746 36.7
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 8.5e-83 312.4 764 35.3
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.2e-82 310.5 795 34.1
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 7.2e-82 309.3 707 36.9
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.6e-81 308.1 709 35.3
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.5e-79 301.6 622 39.4
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.4e-79 300.1 709 34.7
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 3.7e-78 297.0 675 36.9
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.4e-77 295.0 605 38.5
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.4e-77 294.3 523 42.4
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 4.1e-77 293.5 511 43.1
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.2e-76 292.0 701 35.9
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.2e-75 287.7 725 35.2
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 5.5e-74 283.1 731 34.5
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 5.5e-74 283.1 699 35.3
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 5.5e-74 283.1 529 39.5
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.1e-73 281.2 745 34.2
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.7e-73 280.0 484 41.7
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.0e-72 278.9 768 34.8
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 4.0e-72 276.9 219 65.3
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 6.8e-72 276.2 697 34.9
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.2e-71 275.4 333 52.0
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 3.4e-71 273.9 690 35.1
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 4.4e-71 273.5 238 59.2
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 4.9e-70 270.0 696 35.3
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 4.9e-70 270.0 724 34.5
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 2.4e-69 267.7 715 34.7
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 5.4e-69 266.5 781 33.5
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 5.4e-69 266.5 688 34.3
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 4.5e-68 263.5 495 43.0
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.0e-67 262.3 721 34.1
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.7e-67 261.5 713 34.8
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 9.5e-66 255.8 672 34.4
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.6e-65 255.0 709 33.4
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.1e-65 254.6 671 33.8
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 2.8e-65 254.2 718 33.7
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 2.3e-64 251.1 702 34.0
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 5.2e-64 250.0 751 32.5
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 6.8e-64 249.6 658 34.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 3.4e-63 247.3 691 33.3
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 7.5e-63 246.1 706 32.9
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 9.8e-63 245.7 661 33.7
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 9.8e-63 245.7 658 33.1
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 3.7e-62 243.8 590 33.6
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 6.4e-62 243.0 711 34.0
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.0e-61 239.6 220 57.7
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 9.2e-61 239.2 572 37.4
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.6e-60 238.4 823 30.7
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 2.0e-60 238.0 675 32.9
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 3.5e-60 237.3 675 32.6
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 7.8e-60 236.1 788 29.7
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.0e-59 235.7 562 36.3
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.3e-59 235.3 675 32.7
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.3e-59 235.3 521 37.4
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 2.3e-59 234.6 809 30.0
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 3.9e-59 233.8 709 34.1
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.8e-57 227.6 729 30.5
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.0e-56 225.7 679 33.1
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.6e-55 221.1 708 32.1
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 2.2e-54 218.0 799 29.7
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.7e-51 208.4 686 33.2
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 3.9e-51 207.2 719 32.3
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.5e-50 204.5 303 44.9
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 4.3e-50 203.8 682 31.7
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 4.3e-50 203.8 517 34.0
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.6e-49 201.8 718 30.4
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 4.7e-49 200.3 660 30.5
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 4.0e-48 197.2 664 31.0
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.0e-43 181.0 611 31.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.8e-40 171.8 400 39.0
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 7.8e-36 156.4 625 30.2
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.5e-34 152.1 563 30.9
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 2.6e-31 141.4 497 30.6
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 7.6e-31 139.8 697 29.8
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 9.9e-31 139.4 643 27.2
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 5.4e-29 133.7 96 68.8
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 9.6e-26 122.9 144 54.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.2e-22 111.7 117 57.3
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.4e-21 108.2 108 52.8
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.6e-20 104.0 354 31.9
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.5e-18 99.0 404 29.5
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.5e-15 89.0 158 39.2
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.6e-15 88.2 200 35.5
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.1e-13 82.8 61 65.6
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 3.2e-13 81.3 106 48.1
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.8e-11 75.5 79 48.1
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.3e-11 75.1 90 51.1
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 6.9e-08 63.5 174 34.5
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 6.9e-08 63.5 47 66.0
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 1.5e-07 62.4 123 35.8
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 4.5e-07 60.8 50 64.0
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.0e-06 59.7 65 52.3
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.3e-06 59.3 36 72.2
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.3e-06 59.3 65 50.8


User provided reference genes

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