Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001475g0030 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.2e-119 432.2 204 100.0
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 8.3e-106 387.1 188 96.8
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.2e-82 309.3 188 80.9
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 4.1e-81 305.1 188 78.7
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 2.7e-80 302.4 188 78.2
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 1.7e-74 283.1 188 72.9
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 3.2e-73 278.9 191 71.7
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 5.4e-73 278.1 188 71.3
MSTRG.5738 Avicennia marina HOM05D003793 ORTHO05D004471 4.6e-72 275.0 188 69.7
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 4.6e-72 275.0 188 69.7
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 7.8e-72 274.2 188 70.7
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 1.7e-71 273.1 188 70.7
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 1.7e-71 273.1 188 70.7
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 8.7e-71 270.8 188 69.1
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 1.1e-70 270.4 188 68.6
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 1.5e-70 270.0 188 68.6
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 2.5e-70 269.2 188 68.6
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 3.3e-70 268.9 188 68.6
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 4.3e-70 268.5 188 69.1
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 5.6e-70 268.1 192 67.2
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 9.6e-70 267.3 188 69.1
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 9.6e-70 267.3 188 68.6
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.3e-69 266.9 188 69.1
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.3e-69 266.9 188 69.1
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 2.1e-69 266.2 188 67.0
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 2.1e-69 266.2 188 68.1
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 2.8e-69 265.8 188 68.6
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 3.6e-69 265.4 188 68.1
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 3.6e-69 265.4 188 68.6
SalBow3G1300 Salvia bowleyana HOM05D003793 ORTHO05D004471 6.2e-69 264.6 188 66.0
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 6.2e-69 264.6 188 67.6
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 1.4e-68 263.5 188 67.0
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 1.8e-68 263.1 188 66.5
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 4.0e-68 261.9 188 67.0
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 4.0e-68 261.9 188 67.0
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 4.0e-68 261.9 188 67.0
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 4.0e-68 261.9 188 68.1
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 5.3e-68 261.5 188 65.4
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 5.3e-68 261.5 188 65.4
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 5.3e-68 261.5 188 65.4
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 5.3e-68 261.5 188 67.6
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 6.9e-68 261.2 188 66.0
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 6.9e-68 261.2 188 68.1
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 6.9e-68 261.2 188 67.6
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 9.0e-68 260.8 188 67.6
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 9.0e-68 260.8 188 67.6
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 1.2e-67 260.4 188 65.4
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 1.5e-67 260.0 188 67.6
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 1.5e-67 260.0 188 67.0
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 1.5e-67 260.0 188 66.0
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 1.5e-67 260.0 188 66.5
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.5e-67 260.0 188 66.5
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 1.5e-67 260.0 188 66.5
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 2.6e-67 259.2 188 66.0
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 2.6e-67 259.2 188 67.0
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 3.4e-67 258.8 188 67.0
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 3.4e-67 258.8 188 67.0
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 7.6e-67 257.7 188 65.4
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 9.9e-67 257.3 188 67.0
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 1.3e-66 256.9 188 66.0
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.7e-66 256.5 188 65.4
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 2.2e-66 256.1 188 66.5
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 2.9e-66 255.8 188 66.5
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 2.9e-66 255.8 188 64.9
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 2.9e-66 255.8 188 63.8
Oeu001351.2 Olea europaea HOM05D003793 ORTHO05D004471 3.8e-66 255.4 172 73.8
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 4.9e-66 255.0 188 66.0
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 4.9e-66 255.0 188 63.8
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 8.4e-66 254.2 188 66.5
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 8.4e-66 254.2 188 66.5
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 8.4e-66 254.2 188 66.0
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 1.9e-65 253.1 188 66.0
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 1.9e-65 253.1 188 66.0
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 1.9e-65 253.1 188 66.5
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.9e-65 253.1 188 64.9
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 1.9e-65 253.1 188 62.8
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 1.9e-65 253.1 188 65.4
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 3.2e-65 252.3 192 63.5
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 4.2e-65 251.9 192 64.1
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 4.2e-65 251.9 188 64.4
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 4.2e-65 251.9 186 65.6
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 7.1e-65 251.1 188 66.0
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 7.1e-65 251.1 188 66.0
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 7.1e-65 251.1 186 66.1
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 7.1e-65 251.1 186 66.1
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 7.1e-65 251.1 188 62.2
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 7.1e-65 251.1 188 64.9
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 7.1e-65 251.1 191 63.9
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 9.3e-65 250.8 188 64.9
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.2e-64 250.4 186 65.6
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.2e-64 250.4 186 65.6
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 1.2e-64 250.4 188 63.3
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.1e-64 249.6 188 62.2
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 3.5e-64 248.8 192 63.5
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 3.5e-64 248.8 192 63.5
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 4.6e-64 248.4 186 65.6
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 7.9e-64 247.7 192 63.0
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 7.9e-64 247.7 188 62.8
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 1.0e-63 247.3 188 63.8
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 1.0e-63 247.3 192 63.0
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 1.3e-63 246.9 188 63.8
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 1.7e-63 246.5 192 63.0
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 1.7e-63 246.5 192 63.0
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 1.7e-63 246.5 192 63.0
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 2.3e-63 246.1 192 63.0
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 2.3e-63 246.1 187 63.1
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 3.0e-63 245.7 192 62.5
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 3.0e-63 245.7 192 63.0
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 3.0e-63 245.7 192 63.0
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 3.0e-63 245.7 192 63.0
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 3.0e-63 245.7 192 63.0
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 3.0e-63 245.7 188 63.3
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 3.0e-63 245.7 188 64.9
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 3.9e-63 245.4 178 65.2
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 5.1e-63 245.0 192 61.5
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 8.7e-63 244.2 192 63.0
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 2.5e-62 242.7 130 83.8
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 3.3e-62 242.3 192 62.5
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 3.3e-62 242.3 188 61.7
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 5.6e-62 241.5 178 65.2
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 7.4e-62 241.1 193 57.5
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 9.6e-62 240.7 192 61.5
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 1.6e-61 240.0 132 82.6
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 1.1e-60 237.3 130 81.5
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.4e-60 236.1 132 79.5
SalBow3G2252 Salvia bowleyana HOM05D003793 ORTHO05D004471 7.6e-59 231.1 130 77.7
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 9.9e-59 230.7 186 59.7
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 1.3e-58 230.3 188 57.4
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 1.7e-58 229.9 187 55.6
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.4e-57 226.9 130 79.2
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.8e-55 219.9 187 56.1
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 2.3e-55 219.5 129 77.5
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.0e-55 219.2 187 56.1
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 1.5e-54 216.9 188 52.1
FAN09G3950 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.5e-54 216.9 180 59.4
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 4.3e-54 215.3 187 55.1
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 4.8e-53 211.8 131 67.9
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 3.1e-52 209.1 188 54.3
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.2e-51 207.2 188 55.3
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 1.9e-49 199.9 187 49.2
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 7.1e-49 198.0 189 50.8
Mapoly0008s0048 Marchantia polymorpha HOM05D003793 ORTHO05D004471 2.1e-48 196.4 172 55.2
Mapoly0013s0102 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.1e-46 190.7 172 54.1
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 2.5e-46 189.5 189 49.2
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 6.3e-45 184.9 188 48.9
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 5.9e-43 178.3 95 85.3
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 1.4e-41 173.7 183 48.1
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.2e-40 170.6 95 81.1
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 3.6e-40 169.1 99 77.8
CBR_g28039 Chara braunii HOM05D003793 ORTHO05D004471 4.6e-40 168.7 160 50.6
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 1.8e-39 166.8 130 63.8
Cc06_g18710 Coffea canephora HOM05D003793 ORTHO05D004471 3.1e-36 156.0 189 42.3
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 6.9e-36 154.8 101 71.3
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 7.7e-35 151.4 189 41.3
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 6.5e-34 148.3 193 36.8
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 8.5e-34 147.9 186 36.6
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 1.4e-33 147.1 94 69.1
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.9e-33 146.7 186 36.6
Cc06_g18750 Coffea canephora HOM05D003793 ORTHO05D004471 3.0e-31 139.4 188 39.4
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 5.3e-28 128.6 190 32.1
LjContig00408g0002790 Lotus japonicus HOM05D003793 ORTHO05D004471 7.7e-27 124.8 112 55.4
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.4e-25 120.6 76 72.4
arahy.Tifrunner.gnm1.ann1.DIJP1R Arachis hypogaea HOM05D003793 ORTHO05D004471 3.6e-24 115.9 95 60.0
arahy.Tifrunner.gnm1.ann1.V58P3M Arachis hypogaea HOM05D003793 ORTHO05D004471 3.9e-23 112.5 61 82.0
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 1.3e-18 97.4 107 39.3
MCO13G309 Micromonas commoda HOM05D003793 ORTHO05D004471 1.1e-17 94.4 129 37.2
MCO15G681 Micromonas commoda HOM05D003793 ORTHO05D004471 1.6e-16 90.5 111 36.0
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 6.7e-15 85.1 103 35.9
CSS0048120 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 3.7e-13 79.3 73 49.3
CSS0037165 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 1.4e-07 60.8 33 75.8
COL.COLO4_26081 Corchorus olitorius HOM05D001535 ORTHO05D003710 2.6e-06 56.6 111 29.7
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 2.6e-06 56.6 121 28.9
Nitab4.5_0004867g0060 Nicotiana tabacum HOM05D001535 ORTHO05D003710 9.8e-06 54.7 111 27.9


User provided reference genes

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