Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 0.0e+00 1506.5 805 100.0
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 0.0e+00 1365.9 804 88.6
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 0.0e+00 1314.3 779 86.0
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 0.0e+00 1308.1 781 85.9
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 0.0e+00 1308.1 779 85.4
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 0.0e+00 1263.1 776 82.1
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 3.9e-308 1061.2 776 71.6
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 9.0e-305 1050.0 764 70.8
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 2.4e-302 1042.0 775 69.5
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 4.8e-298 1027.7 768 67.7
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 6.9e-297 1023.8 783 67.2
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 1.9e-291 1005.7 597 79.6
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 3.1e-289 998.4 798 66.4
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 1.8e-284 982.6 797 65.0
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 3.7e-282 974.9 793 66.0
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 4.1e-281 971.5 796 65.8
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 5.3e-281 971.1 751 66.7
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 5.9e-280 967.6 778 65.3
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 7.7e-280 967.2 726 67.9
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 7.2e-278 960.7 729 68.0
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 9.4e-278 960.3 756 67.1
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.2e-277 959.9 748 68.3
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 6.1e-277 957.6 792 64.8
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.4e-276 956.4 728 68.7
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 1.8e-276 956.1 653 73.4
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 2.3e-276 955.7 726 67.5
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 1.8e-273 946.0 768 64.6
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 7.7e-272 940.6 782 63.9
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 3.8e-271 938.3 656 70.7
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 3.8e-271 938.3 656 70.7
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 8.5e-271 937.2 784 63.0
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.9e-270 936.0 661 71.1
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 5.5e-270 934.5 668 69.3
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 1.1e-267 926.8 743 65.8
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 4.4e-267 924.9 726 64.2
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 7.4e-267 924.1 761 63.1
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 9.7e-267 923.7 685 69.1
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 4.1e-265 918.3 753 62.7
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 3.8e-263 911.8 555 84.1
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.5e-262 909.1 674 68.2
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 5.5e-262 907.9 593 73.2
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 9.4e-262 907.1 714 67.1
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.7e-261 905.6 592 72.8
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 8.0e-261 904.0 727 65.2
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 1.4e-260 903.3 774 61.5
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 2.3e-260 902.5 750 64.5
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 2.2e-258 896.0 728 64.7
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 6.3e-258 894.4 737 64.0
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 1.2e-256 890.2 731 64.0
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 1.2e-256 890.2 766 61.6
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 1.6e-256 889.8 674 67.8
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 1.3e-255 886.7 752 64.1
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 2.9e-255 885.6 675 67.1
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 2.9e-255 885.6 675 67.1
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 3.2e-254 882.1 787 59.8
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 4.2e-254 881.7 769 59.8
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 1.6e-253 879.8 680 66.6
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 2.7e-253 879.0 795 59.7
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 6.8e-252 874.4 729 63.8
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 5.7e-251 871.3 761 62.2
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 2.2e-250 869.4 787 59.5
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 2.8e-250 869.0 761 60.4
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 6.3e-250 867.8 760 60.0
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 4.1e-249 865.1 718 63.2
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 1.7e-247 859.8 752 61.2
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 2.9e-247 859.0 787 60.6
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 5.0e-247 858.2 768 61.1
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 1.1e-246 857.1 709 63.8
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 1.9e-246 856.3 789 59.9
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 5.2e-244 848.2 757 60.1
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 3.4e-243 845.5 746 61.3
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 9.8e-243 844.0 798 58.1
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 2.4e-241 839.3 760 61.1
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 2.9e-239 832.4 798 57.1
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 1.9e-238 829.7 533 71.7
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 2.8e-237 825.9 781 58.4
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 4.7e-237 825.1 757 60.6
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 2.2e-234 816.2 702 63.1
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 4.9e-234 815.1 742 58.5
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 2.0e-232 809.7 743 56.5
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 7.8e-232 807.7 763 60.4
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 5.6e-230 801.6 738 59.6
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 6.4e-226 788.1 590 65.6
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 5.4e-225 785.0 602 64.6
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 2.0e-219 766.5 817 52.6
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 3.2e-217 759.2 721 56.7
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 1.7e-207 726.9 712 55.3
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 3.4e-203 712.6 540 70.0
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 9.1e-164 581.6 808 45.3
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 9.1e-156 555.1 578 56.2
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.0e-154 551.6 334 74.0
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 3.8e-154 549.7 576 48.4
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 1.4e-153 547.7 462 57.1
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 1.2e-152 544.7 392 66.3
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 3.0e-143 513.5 489 57.5
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.8e-140 504.2 632 46.5
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 2.0e-139 500.7 398 65.3
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.0e-126 457.6 264 77.3
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 8.9e-111 405.6 346 56.4
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 3.4e-110 403.7 404 59.9
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 8.3e-109 399.1 408 51.5
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 3.9e-106 390.2 196 91.3
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 1.7e-90 338.2 492 48.0
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 5.6e-89 333.2 188 77.7
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 3.1e-87 327.4 342 51.2
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 7.1e-68 263.1 173 68.2
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 1.9e-57 228.4 248 59.7
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-33 149.4 117 62.4
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-31 140.2 352 31.2
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 3.5e-30 137.9 83 73.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 7.2e-20 103.6 77 64.9
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 6.8e-18 97.1 116 43.1
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 2.6e-17 95.1 72 55.6
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 4.5e-14 84.3 272 33.5
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 1.8e-07 62.4 53 60.4


User provided reference genes

Program Settings