Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.8e-42 174.5 91 100.0
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.1e-22 109.8 62 93.5
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-22 109.4 62 95.2
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 9.7e-22 106.7 62 93.5
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 9.7e-22 106.7 62 93.5
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 9.7e-22 106.7 62 93.5
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 9.7e-22 106.7 62 93.5
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.8e-21 104.4 62 91.9
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-20 102.8 62 90.3
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 3.4e-19 98.2 61 85.2
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 4.5e-19 97.8 61 86.9
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 5.9e-19 97.4 85 69.4
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 5.9e-19 97.4 61 86.9
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 7.6e-19 97.1 62 87.1
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-18 95.5 61 80.3
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-18 95.5 61 80.3
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-18 95.5 61 80.3
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.2e-18 95.5 80 63.8
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.2e-18 95.5 80 63.8
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 2.9e-18 95.1 61 82.0
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 2.9e-18 95.1 61 82.0
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 6.5e-18 94.0 61 80.3
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 8.5e-18 93.6 61 80.3
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.4e-17 92.8 61 78.7
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.9e-17 92.4 61 77.0
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 1.9e-17 92.4 61 80.3
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 3.2e-17 91.7 61 77.0
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 4.2e-17 91.3 61 78.7
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 5.5e-17 90.9 54 85.2
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-16 89.7 85 63.5
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.1e-16 89.0 87 57.5
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 2.1e-16 89.0 82 61.0
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 2.7e-16 88.6 87 57.5
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.7e-16 88.6 60 75.0
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 3.6e-16 88.2 81 65.4
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 3.6e-16 88.2 61 75.4
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 3.6e-16 88.2 83 60.2
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 72 66.7
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 7.9e-16 87.0 61 75.4
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 7.9e-16 87.0 65 70.8
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 1.8e-15 85.9 61 73.8
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.0e-15 85.1 54 77.8
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-14 82.4 61 73.8
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 1.4e-12 76.3 61 67.2
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.4e-12 75.5 85 54.1
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 6.9e-12 73.9 50 76.0
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 2.6e-11 72.0 54 70.4
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.6e-11 72.0 41 90.2
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.3e-10 69.7 47 74.5
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.9e-10 68.6 45 77.8
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 2.9e-10 68.6 61 60.7
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.9e-09 65.9 44 86.4
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 2.5e-09 65.5 56 60.7
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 2.1e-08 62.4 56 62.5
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 2.1e-08 62.4 40 75.0
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.7e-08 62.0 41 73.2
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-07 59.7 40 72.5
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.3e-07 58.9 38 78.9
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 3.0e-07 58.5 39 79.5
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.1e-06 56.6 53 58.5
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-06 55.1 35 74.3
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-06 55.1 35 74.3
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-06 55.1 35 74.3
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-06 55.1 35 74.3
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-06 55.1 35 74.3


User provided reference genes

Program Settings