Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001437g0160 Nicotiana tabacum HOM05D003607 ORTHO05D004049 4.6e-112 407.9 208 100.0
Nitab4.5_0012135g0010 Nicotiana tabacum HOM05D003607 ORTHO05D004049 1.2e-88 330.1 175 96.6
Solyc11g007080.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 5.7e-86 321.2 176 93.8
Sopen11g003000 Solanum pennellii HOM05D003607 ORTHO05D004049 2.2e-85 319.3 176 93.2
PGSC0003DMG400019486 Solanum tuberosum HOM05D003607 ORTHO05D004049 2.8e-85 318.9 176 93.2
CAN.G1513.4 Capsicum annuum HOM05D003607 ORTHO05D004049 2.0e-83 312.8 179 89.9
Peaxi162Scf00173g00511 Petunia axillaris HOM05D003607 ORTHO05D004049 8.5e-82 307.4 177 90.4
Oeu025590.1 Olea europaea HOM05D003607 ORTHO05D004049 5.7e-78 294.7 180 83.9
Lj7A388T89 Lonicera japonica HOM05D003607 ORTHO05D004049 2.2e-77 292.7 177 83.6
Solyc05g055300.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 4.8e-77 291.6 181 83.4
Sopen05g033740 Solanum pennellii HOM05D003607 ORTHO05D004049 4.8e-77 291.6 181 83.4
PGSC0003DMG400023389 Solanum tuberosum HOM05D003607 ORTHO05D004049 4.8e-77 291.6 181 83.4
Cc02_g09790 Coffea canephora HOM05D003607 ORTHO05D004049 1.2e-75 287.0 180 81.1
Migut.F00909 Erythranthe guttata HOM05D003607 ORTHO05D004049 3.2e-73 278.9 183 79.2
HanXRQChr08g0217791 Helianthus annuus HOM05D003607 ORTHO05D004049 3.2e-73 278.9 176 81.8
Lsat_1_v5_gn_0_7620 Lactuca sativa HOM05D003607 ORTHO05D004049 3.2e-73 278.9 177 81.4
Lj4C706T9 Lonicera japonica HOM05D003607 ORTHO05D004049 3.2e-73 278.9 181 81.8
MSTRG.27534 Avicennia marina HOM05D003607 ORTHO05D004049 5.5e-73 278.1 182 79.1
Actinidia31103 Actinidia chinensis HOM05D003607 ORTHO05D004049 2.1e-72 276.2 170 83.5
Lsat_1_v5_gn_8_23940 Lactuca sativa HOM05D003607 ORTHO05D004049 2.1e-72 276.2 179 81.0
CSS0022022 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.0e-71 273.9 177 79.1
Actinidia34719 Actinidia chinensis HOM05D003607 ORTHO05D004049 4.0e-71 271.9 168 82.7
Hma1.2p1_0802F.1_g220470 Hydrangea macrophylla HOM05D003607 ORTHO05D004049 8.8e-71 270.8 179 79.9
TAR633G2199 Trochodendron aralioides HOM05D003607 ORTHO05D004049 1.5e-70 270.0 177 79.1
MSTRG.9085 Avicennia marina HOM05D003607 ORTHO05D004049 2.6e-70 269.2 182 78.6
CSS0005550 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 7.5e-70 267.7 179 77.1
CSS0036632 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 7.5e-70 267.7 179 77.1
TAR369G0187 Trochodendron aralioides HOM05D003607 ORTHO05D004049 7.5e-70 267.7 177 78.0
Oeu036840.1 Olea europaea HOM05D003607 ORTHO05D004049 1.7e-69 266.5 179 77.1
TAR623G0614 Trochodendron aralioides HOM05D003607 ORTHO05D004049 2.8e-69 265.8 177 78.5
SGA_v2.0_scaffold62G21343 Striga asiatica HOM05D003607 ORTHO05D004049 4.8e-69 265.0 177 78.5
vmacro10304 Vaccinium macrocarpon HOM05D003607 ORTHO05D004049 1.3e-66 256.9 186 76.3
SGA_v2.0_scaffold13G06486 Striga asiatica HOM05D001901 ORTHO05D004049 2.9e-66 255.8 178 77.0
DCAR_013922 Daucus carota HOM05D003607 ORTHO05D004049 3.8e-66 255.4 176 77.3
Rhsim07G0211000 Rhododendron simsii HOM05D003607 ORTHO05D004049 5.0e-66 255.0 189 73.5
DCAR_032378 Daucus carota HOM05D003607 ORTHO05D004049 1.9e-65 253.1 176 76.7
Rhsim09G0142700 Rhododendron simsii HOM05D003607 ORTHO05D004049 1.6e-64 250.0 187 74.3
PSO675G0532 Papaver somniferum HOM05D003607 ORTHO05D004049 2.8e-64 249.2 182 73.1
unitig_748.g8775 Utricularia gibba HOM05D003607 ORTHO05D004049 2.8e-64 249.2 168 79.2
PSO761G0544 Papaver somniferum HOM05D003607 ORTHO05D004049 4.7e-64 248.4 180 72.8
SalBow6G2765 Salvia bowleyana HOM05D003607 ORTHO05D004049 4.7e-64 248.4 172 77.3
Cpa.g.sc183.9 Carica papaya HOM05D003607 ORTHO05D004049 1.0e-63 247.3 178 74.2
PSO210G3326 Papaver somniferum HOM05D003607 ORTHO05D004049 1.8e-63 246.5 180 72.2
Aqoxy4G02802 Aquilegia oxysepala HOM05D003607 ORTHO05D004049 6.8e-63 244.6 189 70.4
PSO541G0274 Papaver somniferum HOM05D003607 ORTHO05D004049 6.8e-63 244.6 181 71.3
PSO339G5446 Papaver somniferum HOM05D003607 ORTHO05D004049 1.5e-62 243.4 177 73.4
TWI63G0764 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 9.8e-62 240.7 180 72.2
PSO384G4166 Papaver somniferum HOM05D003607 ORTHO05D004049 8.3e-61 237.7 177 72.3
DCAR_013921 Daucus carota HOM05D003607 ORTHO05D004049 2.4e-60 236.1 165 77.6
CDE06G0188 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 7.0e-60 234.6 178 66.9
MBI01_g04060_MAGBIO Magnolia biondii HOM05D003607 ORTHO05D004049 7.0e-60 234.6 179 72.1
DCAR_028954 Daucus carota HOM05D003607 ORTHO05D004049 4.5e-59 231.9 182 69.2
HPP92_012048 Vanilla planifolia HOM05D003607 ORTHO05D004049 7.8e-59 231.1 184 69.0
Migut.F01614 Erythranthe guttata HOM05D003607 ORTHO05D004049 4.3e-57 225.3 156 76.3
Lalb_Chr01g0010411 Lupinus albus HOM05D003607 ORTHO05D004049 5.6e-57 224.9 178 69.1
Nitab4.5_0001027g0170 Nicotiana tabacum HOM05D003607 ORTHO05D004049 5.6e-57 224.9 134 86.6
Nitab4.5_0002662g0040 Nicotiana tabacum HOM05D003607 ORTHO05D004049 2.1e-56 223.0 134 86.6
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.8e-55 219.9 173 69.4
FAN02G1747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.0e-54 216.5 177 64.4
Sed0018362 Sechium edule HOM05D003607 ORTHO05D004049 2.0e-54 216.5 167 65.9
MD14G1020900 Malus domestica HOM05D003607 ORTHO05D004049 3.4e-54 215.7 175 65.1
Dinv11849 Davidia involucrata HOM05D003607 ORTHO05D004049 4.4e-54 215.3 177 67.8
Prupe.7G112800 Prunus persica HOM05D003607 ORTHO05D004049 7.5e-54 214.5 175 64.0
RcHm_v2.0_Chr3g0472991 Rosa chinensis HOM05D003607 ORTHO05D004049 1.3e-53 213.8 176 65.3
FAN14G5030 Fragaria x ananassa HOM05D003607 ORTHO05D004049 3.7e-53 212.2 177 63.8
Sed0001726 Sechium edule HOM05D003607 ORTHO05D004049 3.7e-53 212.2 167 64.7
THA.LOC104804679 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 6.4e-53 211.5 175 61.7
Atru.chr8.1565 Acer truncatum HOM05D003607 ORTHO05D004049 1.4e-52 210.3 170 61.8
CANSAT80G1935 Cannabis sativa HOM05D003607 ORTHO05D004049 1.9e-52 209.9 175 64.0
FAN05G4077 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.4e-52 209.5 176 63.1
FAN09G3360 Fragaria x ananassa HOM05D003607 ORTHO05D004049 3.2e-52 209.1 177 62.7
AL4G32410 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 5.4e-52 208.4 174 60.9
FAN05G2511 Fragaria x ananassa HOM05D003607 ORTHO05D004049 7.0e-52 208.0 176 62.5
FAN19G1909 Fragaria x ananassa HOM05D003607 ORTHO05D004049 9.2e-52 207.6 175 62.3
RcHm_v2.0_Chr3g0491231 Rosa chinensis HOM05D003607 ORTHO05D004049 9.2e-52 207.6 176 62.5
Sabra04G0127600 Salix brachista HOM05D003607 ORTHO05D004049 9.2e-52 207.6 172 63.4
AT2G36300 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 1.2e-51 207.2 174 60.9
FAN23G0012 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.2e-51 207.2 175 62.3
Ciclev10012570m.g Citrus clementina HOM05D003607 ORTHO05D004049 1.6e-51 206.8 170 62.4
Dinv09603 Davidia involucrata HOM05D003607 ORTHO05D004049 1.6e-51 206.8 133 79.7
CiPaw.10G008300 Carya illinoinensis HOM05D003607 ORTHO05D004049 2.7e-51 206.1 174 62.1
FAN26G0628 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.7e-51 206.1 175 61.7
Ca_08996_v3 Cicer arietinum L. HOM05D003607 ORTHO05D004049 3.5e-51 205.7 171 64.3
Thhalv10017131m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 3.5e-51 205.7 174 60.3
Sp4g18520 Schrenkiella parvula HOM05D003607 ORTHO05D004049 3.5e-51 205.7 174 60.3
MELO3C009463.2 Cucumis melo HOM05D003607 ORTHO05D004049 4.6e-51 205.3 168 63.7
CsaV3_3G037170 Cucumis sativus L. HOM05D003607 ORTHO05D004049 4.6e-51 205.3 168 63.7
MD12G1023700 Malus domestica HOM05D003607 ORTHO05D004049 4.6e-51 205.3 177 61.0
ClCG10G019070 Citrullus lanatus HOM05D003607 ORTHO05D004049 6.0e-51 204.9 168 63.7
Haze_19593 Corylus avellana HOM05D003607 ORTHO05D004049 1.7e-50 203.4 176 62.5
QL07p039292 Quercus lobata HOM05D003607 ORTHO05D004049 1.7e-50 203.4 174 63.8
Manes.09G056401 Manihot esculenta HOM05D003607 ORTHO05D004049 2.3e-50 203.0 172 59.3
Potri.009G152600 Populus trichocarpa HOM05D003607 ORTHO05D004049 2.3e-50 203.0 172 61.6
Aa31LG5G21430 Aethionema arabicum HOM05D003607 ORTHO05D004049 3.0e-50 202.6 177 59.3
Cpa.g.sc5.37 Carica papaya HOM05D003607 ORTHO05D004049 3.0e-50 202.6 174 61.5
Cfa016592 Carpinus fangiana HOM05D003607 ORTHO05D004049 3.0e-50 202.6 176 61.9
Sabra09G0120500 Salix brachista HOM05D003607 ORTHO05D004049 3.0e-50 202.6 172 60.5
A05p09560 Brassica napus HOM05D003607 ORTHO05D004049 3.9e-50 202.2 175 60.0
C04p11820 Brassica napus HOM05D003607 ORTHO05D004049 3.9e-50 202.2 175 60.0
BolC4t22831H Brassica oleracea HOM05D003607 ORTHO05D004049 3.9e-50 202.2 175 60.0
BraA05t19909Z Brassica rapa HOM05D003607 ORTHO05D004049 3.9e-50 202.2 175 60.0
GSVIVG01033828001 Vitis vinifera HOM05D003607 ORTHO05D004049 3.9e-50 202.2 170 61.2
BcaC02g11742 Brassica carinata HOM05D003607 ORTHO05D004049 8.6e-50 201.1 176 59.1
Glyma.03G194400 Glycine max HOM05D003607 ORTHO05D004049 1.1e-49 200.7 170 63.5
Glyma.19G194200 Glycine max HOM05D003607 ORTHO05D004049 1.1e-49 200.7 170 63.5
Oeu036839.1 Olea europaea HOM05D003607 ORTHO05D004049 1.1e-49 200.7 133 77.4
CiPaw.09G012700 Carya illinoinensis HOM05D003607 ORTHO05D004049 1.9e-49 199.9 180 61.7
THA.LOC104823483 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 2.5e-49 199.5 174 59.8
TPR.G19550 Trifolium pratense HOM05D003607 ORTHO05D004049 2.5e-49 199.5 171 62.0
TWI74G0563 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 2.5e-49 199.5 171 60.2
Duzib093G0509 Durio zibethinus HOM05D003607 ORTHO05D004049 4.3e-49 198.7 173 61.3
Potri.004G190800 Populus trichocarpa HOM05D003607 ORTHO05D004049 4.3e-49 198.7 172 61.6
VMungo1383G3486 Vigna mungo HOM05D003607 ORTHO05D004049 5.6e-49 198.4 170 62.4
Psat5g022640 Pisum sativum HOM05D003607 ORTHO05D004049 7.3e-49 198.0 174 62.6
CARHR130570 Cardamine hirsuta HOM05D003607 ORTHO05D004049 9.5e-49 197.6 174 59.2
Manes.08G024200 Manihot esculenta HOM05D003607 ORTHO05D004049 9.5e-49 197.6 172 58.7
TWI53G1341 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 9.5e-49 197.6 176 60.8
arahy.Tifrunner.gnm1.ann1.0UXM82 Arachis hypogaea HOM05D003607 ORTHO05D004049 1.2e-48 197.2 171 62.0
Phvul.001G189100 Phaseolus vulgaris HOM05D003607 ORTHO05D004049 1.2e-48 197.2 169 60.9
Psat3g033800 Pisum sativum HOM05D003607 ORTHO05D004049 1.2e-48 197.2 171 61.4
arahy.Tifrunner.gnm1.ann1.66EI83 Arachis hypogaea HOM05D003607 ORTHO05D004049 2.1e-48 196.4 171 62.0
Duzib128G1249 Durio zibethinus HOM05D003607 ORTHO05D004049 2.8e-48 196.1 172 61.0
Gorai.002G240700 Gossypium raimondii HOM05D003607 ORTHO05D004049 2.8e-48 196.1 173 61.8
Gohir.A01G207100 Gossypium hirsutum HOM05D003607 ORTHO05D004049 4.7e-48 195.3 173 61.3
Gohir.D01G196500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 6.2e-48 194.9 173 61.3
Thecc.05G087200 Theobroma cacao HOM05D003607 ORTHO05D004049 8.0e-48 194.5 174 60.9
BcaB02g09364 Brassica carinata HOM05D003607 ORTHO05D004049 1.1e-47 194.1 177 59.3
Duzib106G1766 Durio zibethinus HOM05D000444 ORTHO05D004049 1.1e-47 194.1 175 59.4
COL.COLO4_29767 Corchorus olitorius HOM05D003607 ORTHO05D004049 1.4e-47 193.7 171 59.6
Thhalv10010984m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 4.0e-47 192.2 174 59.2
Carub.0004s1805 Capsella rubella HOM05D003607 ORTHO05D004049 5.2e-47 191.8 174 58.0
Medtr7g104430 Medicago truncatula HOM05D003607 ORTHO05D004049 5.2e-47 191.8 170 61.8
Sp5g09570 Schrenkiella parvula HOM05D003607 ORTHO05D004049 5.2e-47 191.8 179 58.1
CARHR162640 Cardamine hirsuta HOM05D003607 ORTHO05D004049 6.8e-47 191.4 178 57.3
Lj1g0001702 Lotus japonicus HOM05D003607 ORTHO05D004049 6.8e-47 191.4 169 61.5
PGR004G0926 Punica granatum HOM05D003607 ORTHO05D004049 6.8e-47 191.4 170 59.4
SEGI_31078 Sequoiadendron giganteum HOM05D003607 ORTHO05D004049 8.9e-47 191.0 178 62.4
Carub.0005s1924 Capsella rubella HOM05D003607 ORTHO05D004049 1.2e-46 190.7 173 59.5
Lalb_Chr01g0018221 Lupinus albus HOM05D003607 ORTHO05D004049 3.4e-46 189.1 169 60.9
Zm00001eb397070 Zea mays HOM05D003607 ORTHO05D004049 4.4e-46 188.7 187 59.9
Os03g0289200 Oryza sativa ssp. japonica HOM05D003607 ORTHO05D004049 2.9e-45 186.0 187 61.0
FAN01G1204 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.9e-45 185.3 170 58.8
AT3G52760 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 6.4e-45 184.9 176 57.4
Gohir.A01G138500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 6.4e-45 184.9 172 59.9
EL10Ac6g14511 Beta vulgaris HOM05D003607 ORTHO05D004049 8.3e-45 184.5 184 56.5
Zm00001eb013300 Zea mays HOM05D003607 ORTHO05D004049 8.3e-45 184.5 190 57.9
Sc02g0000900 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.1e-44 184.1 185 55.7
Gohir.D01G128200 Gossypium hirsutum HOM05D003607 ORTHO05D004049 1.4e-44 183.7 172 59.9
Gorai.002G158800 Gossypium raimondii HOM05D003607 ORTHO05D004049 1.4e-44 183.7 172 59.9
AL5G33530 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 1.9e-44 183.3 177 57.1
BcaC02g07616 Brassica carinata HOM05D003607 ORTHO05D004049 2.4e-44 183.0 168 57.1
BolC4t28008H Brassica oleracea HOM05D003607 ORTHO05D004049 2.4e-44 183.0 168 57.1
CDE08G0948 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 2.4e-44 183.0 135 68.9
Lj3P931T18 Lonicera japonica HOM05D003607 ORTHO05D004049 5.4e-44 181.8 113 78.8
BcaB06g28927 Brassica carinata HOM05D003607 ORTHO05D004049 1.2e-43 180.6 166 56.6
CSS0022860 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 3.5e-43 179.1 178 55.6
EL10Ac3g06213 Beta vulgaris HOM05D003607 ORTHO05D004049 1.6e-40 170.2 183 52.5
CDE11G0953 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 2.8e-40 169.5 166 59.0
ATR0605G137 Amborella trichopoda HOM05D003607 ORTHO05D004049 1.4e-39 167.2 183 51.9
AUR62044160 Chenopodium quinoa HOM05D003607 ORTHO05D004049 1.8e-39 166.8 146 59.6
Mapoly0150s0018 Marchantia polymorpha HOM05D003607 ORTHO05D004049 2.3e-39 166.4 146 63.7
Pp3c18_15780 Physcomitrium patens HOM05D003607 ORTHO05D004049 2.3e-39 166.4 141 60.3
Pp3c18_15783 Physcomitrium patens HOM05D003607 ORTHO05D004049 2.3e-39 166.4 141 60.3
HanXRQChr17g0570591 Helianthus annuus HOM05D003607 ORTHO05D004049 8.9e-39 164.5 116 72.4
Lalb_Chr25g0288381 Lupinus albus HOM05D003607 ORTHO05D004049 7.1e-36 154.8 141 60.3
Pp3c11_15860 Physcomitrium patens HOM05D003607 ORTHO05D004049 2.1e-35 153.3 157 54.1
CiPaw.13G038900 Carya illinoinensis HOM05D003607 ORTHO05D004049 3.9e-34 149.1 176 52.8
Pp3c21_5540 Physcomitrium patens HOM05D003607 ORTHO05D004049 5.1e-34 148.7 110 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2374 Anthoceros agrestis HOM05D003607 ORTHO05D004049 6.6e-34 148.3 128 57.8
Eucgr.A01507 Eucalyptus grandis HOM05D003607 ORTHO05D004049 7.3e-33 144.8 127 59.1
SMO351G0616 Selaginella moellendorffii HOM05D003607 ORTHO05D004049 8.1e-32 141.4 132 59.1
DCAR_032379 Daucus carota HOM05D003607 ORTHO05D004049 8.9e-31 137.9 82 82.9
SalBow2G0328 Salvia bowleyana HOM05D003607 ORTHO05D004049 9.2e-28 127.9 99 74.7
CBR_g2958 Chara braunii HOM05D003607 ORTHO05D004049 2.3e-26 123.2 183 43.7
FAN04G1633 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.9e-25 120.2 110 62.7
PRCOL_00002835 Prasinoderma coloniale HOM05D003607 ORTHO05D004049 1.0e-18 97.8 95 51.6
CBR_g10857 Chara braunii HOM05D003607 ORTHO05D004049 5.1e-18 95.5 96 53.1
FAN14G1813 Fragaria x ananassa HOM05D003607 ORTHO05D004049 5.1e-18 95.5 101 50.5
MCO11G705 Micromonas commoda HOM05D003607 ORTHO05D004049 1.1e-15 87.8 93 44.1
Cre09.g402650 Chlamydomonas reinhardtii HOM05D003607 ORTHO05D004049 1.3e-13 80.9 101 44.6
Cfa026672 Carpinus fangiana HOM05D003607 ORTHO05D004049 1.7e-13 80.5 150 36.7
FAN04G0747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.9e-13 79.0 55 65.5
FAN28G1779 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.9e-13 79.0 55 65.5
FvH4_6g27040 Fragaria vesca HOM05D003607 ORTHO05D004049 6.4e-13 78.6 84 51.2


User provided reference genes

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