Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001437g0010 Nicotiana tabacum HOM05D003456 ORTHO05D004082 3.9e-27 124.0 60 100.0
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 4.3e-26 120.6 58 98.3
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 9.5e-26 119.4 58 94.8
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 9.5e-26 119.4 58 94.8
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 9.5e-26 119.4 58 94.8
PGSC0003DMG400023988 Solanum tuberosum HOM05D003456 ORTHO05D004082 1.4e-21 105.5 51 94.1
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 2.4e-21 104.8 58 81.0
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 2.4e-21 104.8 58 84.5
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 3.2e-21 104.4 58 82.8
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 4.1e-21 104.0 56 83.9
HanXRQChr12g0368091 Helianthus annuus HOM05D003456 ORTHO05D004082 5.4e-21 103.6 58 81.0
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 7.0e-21 103.2 58 81.0
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 7.0e-21 103.2 58 79.3
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 7.0e-21 103.2 56 82.1
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 7.0e-21 103.2 55 85.5
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 9.2e-21 102.8 56 82.1
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 9.2e-21 102.8 58 75.9
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 1.2e-20 102.4 59 79.7
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 1.6e-20 102.1 56 83.9
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 1.6e-20 102.1 53 86.8
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 2.0e-20 101.7 58 79.3
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 2.0e-20 101.7 53 83.0
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 2.0e-20 101.7 58 79.3
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 2.0e-20 101.7 58 82.8
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 2.7e-20 101.3 53 84.9
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 3.5e-20 100.9 58 81.0
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 3.5e-20 100.9 56 80.4
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 3.5e-20 100.9 53 84.9
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 3.5e-20 100.9 55 81.8
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 4.6e-20 100.5 56 78.6
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 4.6e-20 100.5 53 84.9
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 4.6e-20 100.5 58 77.6
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 6.0e-20 100.1 53 83.0
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 6.0e-20 100.1 53 83.0
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 6.0e-20 100.1 53 83.0
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 6.0e-20 100.1 53 83.0
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 6.0e-20 100.1 53 83.0
PGR031G3484 Punica granatum HOM05D003456 ORTHO05D004082 6.0e-20 100.1 56 82.1
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 6.0e-20 100.1 58 75.9
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 6.0e-20 100.1 56 78.6
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 7.8e-20 99.8 53 83.0
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 7.8e-20 99.8 56 78.6
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 7.8e-20 99.8 53 81.1
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 7.8e-20 99.8 53 84.9
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 1.0e-19 99.4 58 79.3
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.0e-19 99.4 53 84.9
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.0e-19 99.4 53 84.9
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 1.0e-19 99.4 53 83.0
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 1.3e-19 99.0 53 83.0
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 1.3e-19 99.0 53 83.0
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 1.3e-19 99.0 53 83.0
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 1.3e-19 99.0 58 75.9
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 1.3e-19 99.0 53 83.0
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 1.7e-19 98.6 56 73.2
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 1.7e-19 98.6 56 73.2
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 1.7e-19 98.6 56 73.2
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 1.7e-19 98.6 56 73.2
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 1.7e-19 98.6 56 73.2
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 1.7e-19 98.6 52 84.6
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 1.7e-19 98.6 56 78.6
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 2.3e-19 98.2 58 77.6
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.3e-19 98.2 51 86.3
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 2.3e-19 98.2 51 86.3
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 2.3e-19 98.2 53 81.1
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 3.0e-19 97.8 58 77.6
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 3.0e-19 97.8 53 81.1
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 3.0e-19 97.8 51 86.3
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 3.0e-19 97.8 53 81.1
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 3.0e-19 97.8 53 83.0
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 3.0e-19 97.8 56 75.0
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 3.0e-19 97.8 53 83.0
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 81.1
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 81.1
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 81.1
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 81.1
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 81.1
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
Solyc09g009460.4 Solanum lycopersicum HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 3.9e-19 97.4 53 83.0
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 5.0e-19 97.1 53 75.5
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 5.0e-19 97.1 53 75.5
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 5.0e-19 97.1 53 75.5
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 5.0e-19 97.1 53 75.5
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 5.0e-19 97.1 53 75.5
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 5.0e-19 97.1 56 76.8
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 5.0e-19 97.1 58 77.6
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 5.0e-19 97.1 53 81.1
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 5.0e-19 97.1 53 83.0
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 6.6e-19 96.7 56 80.4
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 6.6e-19 96.7 53 81.1
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 8.6e-19 96.3 55 83.6
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 8.6e-19 96.3 51 84.3
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 8.6e-19 96.3 51 84.3
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 8.6e-19 96.3 51 84.3
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 8.6e-19 96.3 51 84.3
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 8.6e-19 96.3 53 79.2
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 8.6e-19 96.3 55 83.6
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 1.1e-18 95.9 53 81.1
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 1.1e-18 95.9 51 80.4
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 1.1e-18 95.9 53 81.1
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.1e-18 95.9 53 81.1
Gohir.A09G013133 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.1e-18 95.9 54 79.6
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 1.1e-18 95.9 53 77.4
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 1.1e-18 95.9 53 81.1
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 1.1e-18 95.9 51 82.4
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.5e-18 95.5 56 75.0
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 1.5e-18 95.5 52 80.8
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 1.5e-18 95.5 55 76.4
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 1.5e-18 95.5 53 77.4
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 1.5e-18 95.5 53 77.4
PGR142G0161 Punica granatum HOM05D003456 ORTHO05D004082 1.5e-18 95.5 56 75.0
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 1.9e-18 95.1 51 78.4
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.9e-18 95.1 51 78.4
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 1.9e-18 95.1 56 71.4
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 1.9e-18 95.1 53 79.2
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.9e-18 95.1 53 79.2
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 1.9e-18 95.1 51 78.4
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 2.5e-18 94.7 54 70.4
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 2.5e-18 94.7 51 76.5
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 2.5e-18 94.7 56 71.4
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 2.5e-18 94.7 51 76.5
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 2.5e-18 94.7 51 76.5
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 3.3e-18 94.4 52 78.8
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 3.3e-18 94.4 51 80.4
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 3.3e-18 94.4 51 80.4
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 3.3e-18 94.4 54 75.9
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 3.3e-18 94.4 58 77.6
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 4.3e-18 94.0 65 70.8
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 4.3e-18 94.0 53 83.0
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 4.3e-18 94.0 52 80.8
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 7.3e-18 93.2 49 77.6
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 1.2e-17 92.4 48 83.3
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 4.7e-17 90.5 48 79.2
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.1e-16 89.4 50 72.0
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 1.1e-16 89.4 48 79.2
Thecc.05G088300 Theobroma cacao HOM05D003456 ORTHO05D004082 1.4e-16 89.0 56 80.4
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 3.1e-16 87.8 48 75.0
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 6.8e-16 86.7 53 73.6
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.2e-15 85.9 46 80.4
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 9.8e-15 82.8 45 73.3
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 9.8e-15 82.8 45 71.1
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 1.7e-14 82.0 46 71.7
SEGI_09582 Sequoiadendron giganteum HOM05D003456 ORTHO05D004082 1.7e-14 82.0 45 73.3
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 2.2e-14 81.6 43 74.4
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 2.9e-14 81.3 45 71.1
Hund30565 Selenicereus undatus HOM05D003456 ORTHO05D004082 4.9e-14 80.5 51 76.5
TPR.G4681 Trifolium pratense HOM05D003456 ORTHO05D004082 4.9e-14 80.5 47 74.5
Hund30410 Selenicereus undatus HOM05D003456 ORTHO05D004082 6.4e-14 80.1 39 87.2
PGSC0003DMG402002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 8.3e-14 79.7 39 87.2
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.1e-13 79.3 89 49.4
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 1.4e-13 79.0 43 69.8
C03p57390 Brassica napus HOM05D003456 ORTHO05D004082 2.4e-13 78.2 51 68.6
BolC3t18015H Brassica oleracea HOM05D003456 ORTHO05D004082 2.4e-13 78.2 51 68.6
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 2.4e-13 78.2 43 76.7
Gohir.D09G135500 Gossypium hirsutum HOM05D003456 ORTHO05D004082 7.8e-12 73.2 45 73.3
Gorai.006G155500 Gossypium raimondii HOM05D003456 ORTHO05D004082 7.8e-12 73.2 45 73.3
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 1.9e-10 68.6 35 82.9
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 1.9e-10 68.6 35 82.9
Haze_26136 Corylus avellana HOM05D003456 ORTHO05D004082 5.6e-10 67.0 42 66.7
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 7.3e-10 66.6 33 84.8
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 1.4e-08 62.4 90 43.3
CSS0000169 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 1.8e-08 62.0 46 67.4
Zm00001eb270460 Zea mays HOM05D002293 ORTHO05D006850 3.4e-07 57.8 50 50.0
Haze_27704 Corylus avellana HOM05D003456 ORTHO05D004082 9.9e-07 56.2 42 50.0
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.7e-06 55.5 32 75.0
Zm00001eb377130 Zea mays HOM05D002293 ORTHO05D006850 1.7e-06 55.5 50 50.0
Os06g0146400 Oryza sativa ssp. japonica HOM05D002293 ORTHO05D006850 3.7e-06 54.3 49 46.9
Haze_26850 Corylus avellana HOM05D003456 ORTHO05D004082 4.9e-06 53.9 41 53.7


User provided reference genes

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