Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001423g0110 Nicotiana tabacum HOM05D000556 ORTHO05D000404 1.0e-47 193.0 92 100.0
Nitab4.5_0009578g0030 Nicotiana tabacum HOM05D000556 ORTHO05D000404 2.4e-36 155.2 95 81.1
Manes.08G123900 Manihot esculenta HOM05D000556 ORTHO05D000404 2.3e-15 85.5 75 56.0
arahy.Tifrunner.gnm1.ann1.EFHT67 Arachis hypogaea HOM05D000556 ORTHO05D000404 4.0e-15 84.7 68 61.8
Oeu053702.1 Olea europaea HOM05D000556 ORTHO05D000404 8.8e-15 83.6 72 58.3
Potri.013G027200 Populus trichocarpa HOM05D000556 ORTHO05D000404 1.5e-14 82.8 68 60.3
CSS0005204 Camellia sinensis var. sinensis HOM05D000556 ORTHO05D000404 5.7e-14 80.9 70 58.6
CSS0047912 Camellia sinensis var. sinensis HOM05D000556 ORTHO05D000404 5.7e-14 80.9 70 58.6
ECA246G1312 Erigeron canadensis HOM05D000556 ORTHO05D000404 5.7e-14 80.9 69 52.2
Sabra13G0027900 Salix brachista HOM05D000556 ORTHO05D000404 7.5e-14 80.5 68 57.4
CANSAT54G1972 Cannabis sativa HOM05D000556 ORTHO05D000404 9.8e-14 80.1 72 51.4
Migut.N01393 Erythranthe guttata HOM05D000556 ORTHO05D000404 1.3e-13 79.7 68 58.8
QL03p004133 Quercus lobata HOM05D000556 ORTHO05D000404 1.3e-13 79.7 70 55.7
Hma1.2p1_0666F.1_g199350 Hydrangea macrophylla HOM05D000556 ORTHO05D000404 1.7e-13 79.3 68 57.4
DCAR_022252 Daucus carota HOM05D000556 ORTHO05D000404 6.3e-13 77.4 68 55.9
SalBow3G2472 Salvia bowleyana HOM05D000556 ORTHO05D000404 6.3e-13 77.4 65 60.0
Sc09g0003400 Simmondsia chinensis HOM05D000556 ORTHO05D000404 6.3e-13 77.4 68 57.4
COL.COLO4_13530 Corchorus olitorius HOM05D000556 ORTHO05D000404 8.3e-13 77.0 68 55.9
TWI12G0003 Tripterygium wilfordii HOM05D000556 ORTHO05D000404 1.1e-12 76.6 70 54.3
Rhsim05G0145400 Rhododendron simsii HOM05D000556 ORTHO05D000404 1.8e-12 75.9 70 57.1
arahy.Tifrunner.gnm1.ann1.EQQ960 Arachis hypogaea HOM05D000556 ORTHO05D000404 2.4e-12 75.5 64 59.4
FvH4_6g05181 Fragaria vesca HOM05D000556 ORTHO05D000404 2.4e-12 75.5 68 54.4
FAN02G1453 Fragaria x ananassa HOM05D000556 ORTHO05D000404 2.4e-12 75.5 68 54.4
FAN05G2857 Fragaria x ananassa HOM05D000556 ORTHO05D000404 2.4e-12 75.5 68 54.4
FAN05G5190 Fragaria x ananassa HOM05D000556 ORTHO05D000404 2.4e-12 75.5 68 54.4
FAN05G4356 Fragaria x ananassa HOM05D000556 ORTHO05D000404 3.1e-12 75.1 66 51.5
FAN05G5730 Fragaria x ananassa HOM05D000556 ORTHO05D000404 3.1e-12 75.1 66 51.5
RcHm_v2.0_Chr3g0453911 Rosa chinensis HOM05D000556 ORTHO05D000404 3.1e-12 75.1 66 53.0
CiPaw.07G013800 Carya illinoinensis HOM05D000556 ORTHO05D000404 7.0e-12 73.9 67 52.2
Nitab4.5_0003156g0090 Nicotiana tabacum HOM05D000556 ORTHO05D000404 7.0e-12 73.9 67 56.7
Manes.09G162600 Manihot esculenta HOM05D000556 ORTHO05D000404 1.2e-11 73.2 68 52.9
FvH4_6g05200 Fragaria vesca HOM05D000556 ORTHO05D000404 1.6e-11 72.8 76 46.1
FvH4_6g05210 Fragaria vesca HOM05D000556 ORTHO05D000404 1.6e-11 72.8 66 50.0
FAN14G0741 Fragaria x ananassa HOM05D000556 ORTHO05D000404 1.6e-11 72.8 66 50.0
FAN14G3516 Fragaria x ananassa HOM05D000556 ORTHO05D000404 1.6e-11 72.8 66 50.0
Nitab4.5_0000137g0110 Nicotiana tabacum HOM05D000556 ORTHO05D000404 1.6e-11 72.8 70 54.3
FAN02G3761 Fragaria x ananassa HOM05D000556 ORTHO05D000404 2.7e-11 72.0 76 46.1
HanXRQChr17g0570101 Helianthus annuus HOM05D000556 ORTHO05D000404 2.7e-11 72.0 68 48.5
Zm00001eb371930 Zea mays HOM05D000556 ORTHO05D000404 2.7e-11 72.0 88 42.0
Lj5g0005919 Lotus japonicus HOM05D000556 ORTHO05D000404 4.5e-11 71.2 69 53.6
ATR0580G156 Amborella trichopoda HOM05D000556 ORTHO05D000404 7.8e-11 70.5 68 48.5
Gorai.004G243900 Gossypium raimondii HOM05D000556 ORTHO05D000404 7.8e-11 70.5 68 50.0
Lj9P679T9 Lonicera japonica HOM05D000556 ORTHO05D000404 7.8e-11 70.5 67 49.3
RcHm_v2.0_Chr3g0453861 Rosa chinensis HOM05D000556 ORTHO05D000404 7.8e-11 70.5 65 49.2
RcHm_v2.0_Chr3g0453871 Rosa chinensis HOM05D000556 ORTHO05D000404 7.8e-11 70.5 66 50.0
Thecc.05G299400 Theobroma cacao HOM05D000556 ORTHO05D000404 7.8e-11 70.5 67 53.7
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 1.0e-10 70.1 65 56.9
Prupe.6G331700 Prunus persica HOM05D000556 ORTHO05D000404 1.0e-10 70.1 68 50.0
Haze_04253 Corylus avellana HOM05D000556 ORTHO05D000404 1.3e-10 69.7 65 50.8
FAN05G4200 Fragaria x ananassa HOM05D000556 ORTHO05D000404 1.3e-10 69.7 76 44.7
MD04G1211300 Malus domestica HOM05D000556 ORTHO05D000404 1.3e-10 69.7 68 52.9
Peaxi162Scf00071g00077 Petunia axillaris HOM05D000556 ORTHO05D000404 1.3e-10 69.7 68 54.4
Os07g0407900 Oryza sativa ssp. japonica HOM05D000556 ORTHO05D000404 1.7e-10 69.3 72 48.6
Zm00001eb332680 Zea mays HOM05D000556 ORTHO05D000404 1.7e-10 69.3 68 48.5
Gohir.A08G212700 Gossypium hirsutum HOM05D000556 ORTHO05D000404 2.9e-10 68.6 68 48.5
FAN09G3856 Fragaria x ananassa HOM05D000556 ORTHO05D000404 5.0e-10 67.8 66 47.0
Cfa006534 Carpinus fangiana HOM05D000556 ORTHO05D000404 6.6e-10 67.4 64 50.0
Gohir.D08G229700 Gossypium hirsutum HOM05D000556 ORTHO05D000404 6.6e-10 67.4 68 48.5
RcHm_v2.0_Chr3g0453901 Rosa chinensis HOM05D000556 ORTHO05D000404 1.5e-09 66.2 66 45.5
unitig_0.g2237 Utricularia gibba HOM05D000556 ORTHO05D000404 2.5e-09 65.5 65 52.3
Haze_04254 Corylus avellana HOM05D000556 ORTHO05D000404 3.3e-09 65.1 68 47.1
Os01g0388700 Oryza sativa ssp. japonica HOM05D000556 ORTHO05D000404 5.6e-09 64.3 70 45.7
SEGI_12135 Sequoiadendron giganteum HOM05D000556 ORTHO05D000404 5.6e-09 64.3 67 47.8
PGR083G0046 Punica granatum HOM05D000556 ORTHO05D000404 7.3e-09 63.9 81 44.4
Duzib177G0084 Durio zibethinus HOM05D000556 ORTHO05D000404 1.2e-08 63.2 73 45.2
CiPaw.07G013900 Carya illinoinensis HOM05D000556 ORTHO05D000404 1.6e-08 62.8 69 49.3
Os01g0368700 Oryza sativa ssp. japonica HOM05D000556 ORTHO05D000404 2.1e-08 62.4 68 42.6
SEGI_00727 Sequoiadendron giganteum HOM05D000556 ORTHO05D000404 2.8e-08 62.0 67 47.8
SEGI_02478 Sequoiadendron giganteum HOM05D000556 ORTHO05D000404 3.6e-08 61.6 66 42.4
HPP92_010627 Vanilla planifolia HOM05D000556 ORTHO05D000404 3.6e-08 61.6 68 44.1
Prupe.1G205000 Prunus persica HOM05D000556 ORTHO05D000404 4.7e-08 61.2 64 51.6
Ciclev10003468m.g Citrus clementina HOM05D000556 ORTHO05D000404 6.1e-08 60.8 68 39.7
Zm00001eb161720 Zea mays HOM05D000556 ORTHO05D000404 6.1e-08 60.8 72 44.4
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 8.0e-08 60.5 70 44.3
Os01g0389200 Oryza sativa ssp. japonica HOM05D000556 ORTHO05D000404 8.0e-08 60.5 70 42.9
Prupe.1G204900 Prunus persica HOM05D000556 ORTHO05D000404 1.4e-07 59.7 64 50.0
QL03p004142 Quercus lobata HOM05D000556 ORTHO05D000404 1.4e-07 59.7 67 43.3
Os01g0389700 Oryza sativa ssp. japonica HOM05D000556 ORTHO05D000404 1.8e-07 59.3 78 41.0
Atru.chr2.506 Acer truncatum HOM05D000556 ORTHO05D000404 2.3e-07 58.9 68 44.1
MBI19_g25276_MAGBIO Magnolia biondii HOM05D000556 ORTHO05D000404 2.3e-07 58.9 68 41.2
BcaC06g31498 Brassica carinata HOM05D000556 ORTHO05D000404 3.0e-07 58.5 66 42.4
TAR624G0309 Trochodendron aralioides HOM05D000556 ORTHO05D000404 3.0e-07 58.5 66 47.0
AT5G46090 Arabidopsis thaliana HOM05D000556 ORTHO05D000404 4.0e-07 58.2 66 43.9
GSVIVG01021117001 Vitis vinifera HOM05D000556 ORTHO05D000404 4.0e-07 58.2 66 45.5
Nn1g06407 Nelumbo nucifera HOM05D000556 ORTHO05D000404 5.2e-07 57.8 66 45.5
PGSC0003DMG400013745 Solanum tuberosum HOM05D000556 ORTHO05D000404 5.2e-07 57.8 66 43.9
QL03p004138 Quercus lobata HOM05D000556 ORTHO05D024744 6.8e-07 57.4 68 41.2
Peaxi162Scf00490g00022 Petunia axillaris HOM05D000556 ORTHO05D000404 8.9e-07 57.0 66 43.9
BcaC06g31497 Brassica carinata HOM05D000556 ORTHO05D000404 1.2e-06 56.6 66 42.4
C07p29270 Brassica napus HOM05D000556 ORTHO05D000404 1.2e-06 56.6 66 42.4
BolC7t43469H Brassica oleracea HOM05D000556 ORTHO05D000404 1.2e-06 56.6 66 42.4
BraA06t27483Z Brassica rapa HOM05D000556 ORTHO05D000404 1.2e-06 56.6 66 42.4
MELO3C007258.2 Cucumis melo HOM05D000556 ORTHO05D000404 1.2e-06 56.6 66 42.4
THA.LOC104798405 Tarenaya hassleriana HOM05D000556 ORTHO05D000404 1.2e-06 56.6 66 43.9
VMungo0251G3721 Vigna mungo HOM05D000556 ORTHO05D000404 1.5e-06 56.2 66 40.9
Atru.chr2.507 Acer truncatum HOM05D000556 ORTHO05D000404 2.0e-06 55.8 68 44.1
arahy.Tifrunner.gnm1.ann1.DMY225 Arachis hypogaea HOM05D000556 ORTHO05D000404 2.0e-06 55.8 66 42.4
arahy.Tifrunner.gnm1.ann1.Y9NGKZ Arachis hypogaea HOM05D000556 ORTHO05D000404 2.0e-06 55.8 66 42.4
FvH4_3g08540 Fragaria vesca HOM05D000556 ORTHO05D000404 2.0e-06 55.8 66 42.4
FAN11G1872 Fragaria x ananassa HOM05D000556 ORTHO05D000404 2.0e-06 55.8 66 42.4
FAN16G3347 Fragaria x ananassa HOM05D000556 ORTHO05D000404 2.0e-06 55.8 66 42.4
MD04G1047900 Malus domestica HOM05D000556 ORTHO05D000404 2.0e-06 55.8 65 44.6
Phvul.002G232400 Phaseolus vulgaris HOM05D000556 ORTHO05D000404 2.0e-06 55.8 66 40.9
Medtr2g014550 Medicago truncatula HOM05D000556 ORTHO05D000404 2.6e-06 55.5 66 40.9
Nn4g24943 Nelumbo nucifera HOM05D000556 ORTHO05D000404 2.6e-06 55.5 66 40.9
VMungo0540G1684 Vigna mungo HOM05D000556 ORTHO05D000404 2.6e-06 55.5 66 40.9
AL8G12420 Arabidopsis lyrata HOM05D000556 ORTHO05D000404 3.4e-06 55.1 66 40.9
Haze_04252 Corylus avellana HOM05D000556 ORTHO05D028620 3.4e-06 55.1 72 43.1
Psat1g202880 Pisum sativum HOM05D000556 ORTHO05D000404 3.4e-06 55.1 66 40.9
Sabra11G0040200 Salix brachista HOM05D000556 ORTHO05D000404 4.4e-06 54.7 66 40.9
arahy.Tifrunner.gnm1.ann1.JP0MMK Arachis hypogaea HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 40.9
CANSAT35G0061 Cannabis sativa HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 42.4
Gohir.A10G028100 Gossypium hirsutum HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 40.9
MBI17_g12077_MAGBIO Magnolia biondii HOM05D000556 ORTHO05D000404 5.7e-06 54.3 65 46.2
Nitab4.5_0001955g0090 Nicotiana tabacum HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 43.9
Nitab4.5_0017998g0020 Nicotiana tabacum HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 43.9
Os01g0368500 Oryza sativa ssp. japonica HOM05D000556 ORTHO05D000404 5.7e-06 54.3 73 34.2
Solyc10g008970.1 Solanum lycopersicum HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 40.9
PGSC0003DMG402031751 Solanum tuberosum HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 43.9
TPR.G11661 Trifolium pratense HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 39.4
unitig_62.g23331 Utricularia gibba HOM05D000556 ORTHO05D000404 5.7e-06 54.3 66 36.4
Ah.06g190200 Amaranthus hybridus HOM05D000556 ORTHO05D000404 7.5e-06 53.9 69 43.5
COL.COLO4_05704 Corchorus olitorius HOM05D000556 ORTHO05D000404 7.5e-06 53.9 65 40.0
Duzib235G1090 Durio zibethinus HOM05D000556 ORTHO05D000404 7.5e-06 53.9 66 40.9
RcHm_v2.0_Chr5g0009301 Rosa chinensis HOM05D000556 ORTHO05D000404 7.5e-06 53.9 66 40.9
GSVIVG01020606001 Vitis vinifera HOM05D000556 ORTHO05D000404 7.5e-06 53.9 66 40.9
Duzib248G0409 Durio zibethinus HOM05D000556 ORTHO05D000404 9.8e-06 53.5 72 38.9
Lj6g0012130 Lotus japonicus HOM05D000556 ORTHO05D000404 9.8e-06 53.5 67 38.8


User provided reference genes

Program Settings