Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1947.6 959 100.0
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1649.0 902 90.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1515.7 931 82.8
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 0.0e+00 1302.7 896 73.4
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 0.0e+00 1291.2 896 72.8
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 0.0e+00 1256.9 899 70.2
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 2.0e-189 667.2 895 45.5
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.3e-182 643.7 847 45.9
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 6.7e-182 642.1 920 43.3
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.2e-175 621.3 950 41.3
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.1e-171 606.3 933 40.8
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 5.3e-171 605.9 892 42.8
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 2.9e-169 600.1 947 40.5
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 8.5e-169 598.6 934 40.5
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 9.8e-165 585.1 926 40.3
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 6.3e-164 582.4 933 40.5
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.2e-162 578.2 960 38.4
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.9e-161 573.5 929 39.7
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 3.8e-161 573.2 928 38.8
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 5.0e-161 572.8 942 40.1
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.9e-160 570.9 918 39.1
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 2.5e-160 570.5 754 44.2
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 9.4e-160 568.5 937 38.5
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 3.6e-159 566.6 915 40.3
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 8.0e-159 565.5 937 38.3
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.2e-157 561.6 909 38.8
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 1.2e-157 561.6 914 39.7
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.7e-157 559.3 914 39.3
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.8e-156 557.0 934 37.6
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.7e-156 556.6 937 38.1
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 4.1e-155 553.1 917 39.5
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 5.9e-154 549.3 923 39.2
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 5.9e-154 549.3 918 38.6
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 7.7e-154 548.9 914 38.4
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 2.3e-153 547.4 917 38.8
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 1.5e-152 544.7 916 39.6
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 7.3e-152 542.3 936 38.0
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 8.0e-151 538.9 944 38.8
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.0e-150 538.5 926 38.9
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 3.4e-149 533.5 920 38.3
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 6.4e-148 529.3 810 40.2
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.2e-147 526.9 913 37.7
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.2e-146 525.0 918 37.5
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 2.3e-145 520.8 914 37.6
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.0e-145 520.4 928 38.4
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 5.0e-145 519.6 918 37.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.6e-143 514.6 926 37.3
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 4.7e-143 513.1 915 37.6
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 3.1e-142 510.4 913 36.8
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.6e-141 507.3 931 37.4
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.4e-141 506.5 923 35.5
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 9.8e-141 505.4 906 36.5
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 9.8e-141 505.4 917 37.5
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 4.9e-140 503.1 914 37.5
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.4e-139 500.7 923 37.3
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.1e-139 500.0 906 37.4
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 1.6e-138 498.0 912 36.8
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.1e-135 487.6 708 41.0
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.1e-134 485.3 896 36.6
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 6.4e-132 476.1 913 36.5
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 1.1e-131 475.3 920 36.5
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.4e-131 474.9 936 36.8
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.9e-131 474.6 925 36.0
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.2e-130 471.9 930 36.3
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 4.3e-128 463.4 905 36.8
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 4.3e-128 463.4 924 35.8
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 1.7e-124 451.4 918 34.7
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 2.9e-124 450.7 920 34.8
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.1e-123 446.8 925 34.7
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 4.6e-122 443.4 557 46.5
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.1e-119 434.5 926 33.3
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.2e-117 428.7 741 37.1
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 3.2e-115 420.6 902 33.8
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.6e-114 418.3 891 32.7
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.3e-113 414.5 906 33.9
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.3e-112 410.2 941 33.3
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.8e-110 404.8 904 33.3
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 9.0e-110 402.5 650 40.6
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.2e-107 393.7 765 36.9
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.4e-102 378.6 912 31.8
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 2.4e-102 377.9 904 31.7
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 4.5e-101 373.6 855 32.5
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.2e-98 365.5 873 30.7
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.6e-98 363.6 869 31.8
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 6.0e-98 363.2 855 31.6
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 8.7e-97 359.4 894 30.4
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 1.9e-96 358.2 928 30.9
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 1.9e-96 358.2 837 32.4
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 7.4e-96 356.3 853 31.5
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.3e-95 355.5 856 31.5
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.5e-93 348.6 855 30.5
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.0e-93 348.2 739 31.9
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 3.0e-89 334.3 917 29.9
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 7.4e-88 329.7 645 34.9
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.3e-81 308.9 453 42.8
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-78 298.9 945 29.5
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.4e-77 294.3 730 32.6
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 1.7e-76 292.0 644 32.5
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.7e-74 284.6 925 29.3
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 7.9e-74 283.1 990 29.8
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.8e-71 273.9 495 37.4
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 3.1e-70 271.2 926 28.8
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.4e-67 262.3 826 30.3
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.5e-67 260.4 642 30.7
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 3.0e-65 254.6 557 30.9
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.8e-62 245.4 636 29.2
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 6.7e-57 226.9 934 25.8
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.4e-54 218.4 499 31.3
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-52 212.6 788 26.8
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 2.3e-49 201.8 905 25.0
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 4.0e-49 201.1 126 76.2
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 8.8e-49 199.9 540 30.2
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 2.0e-48 198.7 398 34.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 6.3e-47 193.7 500 29.8
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.1e-46 189.9 395 34.2
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-45 189.5 450 31.6
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.8e-44 184.5 206 47.1
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.2e-40 172.9 177 50.3
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.6e-37 162.5 408 32.4
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 3.8e-36 157.9 338 33.4
Peaxi162Scf00165g00216 Petunia axillaris HOM05D004345 ORTHO05D005192 1.4e-33 149.4 182 48.4
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.6e-29 136.0 285 33.0
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.5e-29 134.8 159 44.7
CAN.G1428.6 Capsicum annuum HOM05D004345 ORTHO05D005192 5.9e-29 134.0 93 72.0
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.0e-28 133.3 159 44.0
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.6e-26 125.9 309 29.4
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.6e-26 125.9 309 29.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 2.1e-26 125.6 218 34.4
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 7.5e-24 117.1 260 30.8
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.3e-23 116.3 454 26.9
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.9e-23 114.4 527 27.1
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 4.9e-23 114.4 249 32.5
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 6.4e-23 114.0 225 32.0
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.3e-20 106.3 319 28.5
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-19 102.4 233 34.8
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 5.6e-19 100.9 620 23.4
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 7.3e-19 100.5 94 51.1
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.6e-18 99.4 442 25.1
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 4.0e-17 94.7 747 22.4
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.2e-15 89.0 265 30.9
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.9e-14 85.9 317 25.6
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 8.6e-12 77.0 148 35.8
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 1.5e-11 76.3 149 35.6
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.2e-08 66.6 163 35.0


User provided reference genes

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