Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.7e-202 708.0 353 100.0
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 9.8e-163 577.0 341 82.7
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.2e-147 526.9 349 72.2
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.7e-146 521.9 342 72.2
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.2e-144 516.9 342 71.6
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 7.8e-144 514.2 349 70.2
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 2.8e-141 505.8 315 75.6
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 4.4e-139 498.4 324 73.5
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 7.1e-129 464.5 349 62.2
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 1.0e-127 460.7 353 61.8
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.3e-127 459.5 337 62.3
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 1.1e-126 457.2 299 74.9
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 4.3e-126 455.3 336 62.8
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 7.3e-126 454.5 337 61.1
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 6.2e-125 451.4 341 60.7
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 8.1e-125 451.1 334 62.9
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.1e-124 450.7 342 60.5
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 4.0e-124 448.7 335 60.6
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 2.0e-123 446.4 352 57.4
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 5.8e-123 444.9 360 58.1
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 9.9e-123 444.1 338 58.0
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 2.9e-122 442.6 335 58.8
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 6.4e-122 441.4 332 59.6
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 8.4e-122 441.0 332 59.3
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.1e-121 440.7 341 58.4
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.4e-121 439.5 332 59.3
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.2e-121 439.1 332 59.0
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 9.3e-121 437.6 341 61.6
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.6e-120 436.8 335 60.9
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 7.8e-120 434.5 339 63.1
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 8.7e-119 431.0 331 58.6
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.5e-118 430.3 337 60.8
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 2.5e-118 429.5 334 57.8
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 5.6e-118 428.3 341 58.4
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.6e-117 426.8 341 58.4
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 6.2e-117 424.9 334 61.1
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.2e-117 424.9 220 95.9
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.1e-116 424.1 330 59.4
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.4e-116 423.7 337 58.5
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.4e-116 422.9 335 57.3
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 5.3e-116 421.8 335 56.1
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 2.0e-115 419.9 316 61.7
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 2.6e-115 419.5 326 60.7
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.6e-115 419.5 328 58.5
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.8e-115 418.3 329 59.3
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 5.8e-115 418.3 339 55.5
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 7.6e-115 417.9 334 57.2
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 3.8e-114 415.6 352 57.7
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 8.4e-114 414.5 331 58.6
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 8.4e-114 414.5 321 61.7
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 8.4e-114 414.5 329 58.7
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 8.4e-114 414.5 329 58.7
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 1.4e-113 413.7 330 57.3
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 1.9e-113 413.3 334 57.2
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 1.2e-112 410.6 297 62.6
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 1.6e-112 410.2 336 58.6
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.6e-112 410.2 327 59.0
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 2.1e-112 409.8 328 59.1
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.7e-112 409.5 280 66.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 7.9e-112 407.9 310 59.4
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 7.9e-112 407.9 328 58.5
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.8e-111 406.8 352 55.1
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 5.1e-111 405.2 310 59.0
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 8.7e-111 404.4 333 55.6
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.1e-110 404.1 301 60.5
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 5.6e-110 401.7 333 56.8
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 5.6e-110 401.7 337 57.6
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 1.6e-109 400.2 350 54.6
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.8e-109 399.4 339 55.8
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.6e-109 399.1 329 56.2
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 4.8e-109 398.7 294 61.2
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.1e-108 397.5 332 55.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.1e-108 397.5 337 56.4
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.2e-107 394.0 334 56.9
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.5e-107 393.7 340 52.9
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 5.8e-107 391.7 324 57.1
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.7e-106 390.2 350 52.9
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 1.1e-105 387.5 283 60.8
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.6e-104 383.6 340 53.8
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.7e-104 382.9 334 53.9
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 3.4e-99 365.9 286 58.7
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 5.8e-99 365.2 326 53.4
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.3e-98 364.0 337 52.2
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.3e-98 364.0 329 50.5
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 2.9e-98 362.8 337 50.1
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 6.5e-98 361.7 341 50.7
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.1e-97 360.9 329 53.8
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.9e-97 360.1 341 50.4
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 7.1e-97 358.2 341 50.1
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 2.7e-96 356.3 326 53.1
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 4.6e-96 355.5 329 53.5
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.0e-95 354.4 326 53.1
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.3e-95 354.0 328 50.9
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 3.0e-95 352.8 330 50.9
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 3.9e-95 352.4 342 51.2
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 3.9e-95 352.4 342 51.2
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 3.9e-95 352.4 289 56.4
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 8.7e-95 351.3 352 48.6
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.5e-94 349.7 352 49.1
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.7e-93 345.9 345 49.9
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.5e-91 340.5 337 50.4
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 3.6e-88 329.3 314 49.7
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 6.1e-88 328.6 339 48.4
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 6.3e-85 318.5 252 58.3
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 8.5e-74 281.6 254 54.3
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 4.4e-70 269.2 296 44.9
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.3e-69 267.7 286 44.1
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 2.2e-69 266.9 303 43.6
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 4.8e-69 265.8 285 44.2
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.6e-67 260.0 289 43.3
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 5.9e-67 258.8 294 44.2
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.1e-60 238.0 361 39.3
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 3.1e-60 236.5 320 40.3
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 8.0e-56 221.9 190 53.7
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.6e-50 201.8 288 37.5
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.2e-48 198.0 282 36.9
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-47 194.5 288 37.5
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-46 191.4 312 37.5
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.8e-46 188.3 154 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-45 186.8 293 35.5
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-44 183.7 317 35.0
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 5.0e-42 176.0 293 34.5
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-41 173.7 348 34.2
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.3e-41 173.3 285 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.3e-41 172.2 296 34.1
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.5e-41 171.8 306 33.7
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-39 167.9 265 37.0
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-39 167.2 338 28.7
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.8e-39 165.6 297 34.3
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-36 157.1 304 32.9
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-35 154.1 235 37.4
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-35 152.9 306 32.0
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.0e-35 152.5 291 32.3
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-34 149.8 291 31.3
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.6e-33 146.0 291 30.9
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.4e-29 132.5 318 28.6
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-25 121.3 271 29.2
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.3e-21 108.2 337 29.1
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-14 84.7 66 53.0
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 2.4e-12 77.4 47 66.0
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 4.1e-12 76.6 97 42.3
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.5e-11 73.6 74 39.2
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.0e-10 72.0 156 30.1


User provided reference genes

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