Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001385g0110 Nicotiana tabacum HOM05D004251 ORTHO05D005010 8.0e-230 800.0 396 100.0
Nitab4.5_0000178g0050 Nicotiana tabacum HOM05D004251 ORTHO05D005010 2.0e-212 742.3 393 94.4
PGSC0003DMG402003505 Solanum tuberosum HOM05D004251 ORTHO05D005010 3.0e-200 701.8 405 88.4
Sopen02g029950 Solanum pennellii HOM05D004251 ORTHO05D005010 6.6e-200 700.7 402 89.1
Solyc02g085250.4 Solanum lycopersicum HOM05D004251 ORTHO05D005010 1.6e-198 696.0 402 88.6
CAN.G358.93 Capsicum annuum HOM05D004251 ORTHO05D005010 1.5e-188 662.9 375 89.1
QL06p046103 Quercus lobata HOM05D004251 ORTHO05D005010 1.0e-168 597.0 406 75.4
GSVIVG01018958001 Vitis vinifera HOM05D004251 ORTHO05D005010 8.7e-168 594.0 404 75.0
Cc11_g04410 Coffea canephora HOM05D004251 ORTHO05D005010 7.3e-167 590.9 392 74.7
Peaxi162Scf00366g00011 Petunia axillaris HOM05D004251 ORTHO05D005010 7.3e-167 590.9 395 77.7
QL06p046182 Quercus lobata HOM05D004251 ORTHO05D005010 7.3e-167 590.9 407 73.7
Actinidia36561 Actinidia chinensis HOM05D004251 ORTHO05D005010 1.8e-165 586.3 401 73.8
COL.COLO4_22078 Corchorus olitorius HOM05D004251 ORTHO05D005010 1.8e-165 586.3 406 74.6
Hma1.2p1_0224F.1_g094630 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 4.0e-165 585.1 386 76.9
PGR102G3108 Punica granatum HOM05D004251 ORTHO05D005010 2.6e-164 582.4 402 73.6
Ciclev10025293m.g Citrus clementina HOM05D004251 ORTHO05D005010 2.2e-163 579.3 401 73.8
Atru.chr3.571 Acer truncatum HOM05D004251 ORTHO05D005010 8.4e-163 577.4 400 72.2
CiPaw.01G038300 Carya illinoinensis HOM05D004251 ORTHO05D005010 1.1e-162 577.0 401 73.8
CSS0006960 Camellia sinensis var. sinensis HOM05D004251 ORTHO05D005010 1.9e-162 576.2 404 74.0
ECA232G3289 Erigeron canadensis HOM05D004251 ORTHO05D005010 1.9e-162 576.2 400 71.8
Prupe.7G154800 Prunus persica HOM05D004251 ORTHO05D005010 7.1e-162 574.3 408 72.3
Thecc.01G035600 Theobroma cacao HOM05D004251 ORTHO05D005010 1.6e-161 573.2 406 73.2
Oeu033644.1 Olea europaea HOM05D004251 ORTHO05D005010 3.5e-161 572.0 422 70.9
TAR625G0258 Trochodendron aralioides HOM05D004251 ORTHO05D005010 6.0e-161 571.2 407 73.7
Medtr8g077580 Medicago truncatula HOM05D004251 ORTHO05D005010 1.3e-160 570.1 403 72.2
Manes.02G094600 Manihot esculenta HOM05D004251 ORTHO05D005010 1.8e-160 569.7 403 72.2
HanXRQChr09g0274621 Helianthus annuus HOM05D004251 ORTHO05D005010 2.3e-160 569.3 403 72.0
arahy.Tifrunner.gnm1.ann1.UMLA17 Arachis hypogaea HOM05D004251 ORTHO05D005010 3.0e-160 568.9 400 72.5
EL10Ac6g15559 Beta vulgaris HOM05D004251 ORTHO05D005010 1.1e-159 567.0 404 71.5
Sed0021773 Sechium edule HOM05D004251 ORTHO05D005010 1.9e-159 566.2 400 72.2
Lj1g0003213 Lotus japonicus HOM05D004251 ORTHO05D005010 2.5e-159 565.8 400 71.5
Sabra07G0022400 Salix brachista HOM05D004251 ORTHO05D005010 2.5e-159 565.8 406 71.4
Glyma.16G139600 Glycine max HOM05D004251 ORTHO05D005010 3.3e-159 565.5 405 70.9
MSTRG.2762 Avicennia marina HOM05D004251 ORTHO05D005010 9.6e-159 563.9 408 70.1
MD02G1147300 Malus domestica HOM05D004251 ORTHO05D005010 9.6e-159 563.9 409 70.9
Aa31LG1G15090 Aethionema arabicum HOM05D004251 ORTHO05D005010 4.8e-158 561.6 405 70.6
Carub.0008s2797 Capsella rubella HOM05D004251 ORTHO05D005010 6.2e-158 561.2 400 70.5
RcHm_v2.0_Chr2g0101541 Rosa chinensis HOM05D004251 ORTHO05D005010 6.2e-158 561.2 407 70.5
Psat4g093040 Pisum sativum HOM05D004251 ORTHO05D005010 8.1e-158 560.8 400 70.2
THA.LOC104821294 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 1.4e-157 560.1 407 69.5
TWI73G1034 Tripterygium wilfordii HOM05D004251 ORTHO05D005010 1.4e-157 560.1 404 70.0
Cpa.g.sc39.20 Carica papaya HOM05D004251 ORTHO05D005010 1.8e-157 559.7 400 69.5
Ca_22268_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 4.0e-157 558.5 405 70.4
Ca_22281_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 4.0e-157 558.5 405 70.4
Lalb_Chr05g0227621 Lupinus albus HOM05D004251 ORTHO05D005010 4.0e-157 558.5 405 70.4
Hund13977 Selenicereus undatus HOM05D004251 ORTHO05D005010 4.0e-157 558.5 402 70.1
MELO3C016373.2 Cucumis melo HOM05D004251 ORTHO05D005010 5.3e-157 558.1 406 71.4
Thhalv10024792m.g Eutrema salsugineum HOM05D004251 ORTHO05D005010 9.0e-157 557.4 404 70.0
AT5G49555 Arabidopsis thaliana HOM05D004251 ORTHO05D005010 1.2e-156 557.0 400 70.2
CsaV3_4G005780 Cucumis sativus L. HOM05D004251 ORTHO05D005010 1.2e-156 557.0 406 70.9
DCAR_017290 Daucus carota HOM05D004251 ORTHO05D005010 1.5e-156 556.6 401 71.1
VMungo0251G3189 Vigna mungo HOM05D004251 ORTHO05D005010 1.5e-156 556.6 403 71.0
Duzib147G0019 Durio zibethinus HOM05D004251 ORTHO05D005010 2.0e-156 556.2 404 70.5
Glyma.02G056800 Glycine max HOM05D004251 ORTHO05D005010 5.8e-156 554.7 401 70.1
Nn5g29614 Nelumbo nucifera HOM05D004251 ORTHO05D005010 7.6e-156 554.3 407 71.3
THA.LOC104821560 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 1.3e-155 553.5 407 69.5
CARHR281200 Cardamine hirsuta HOM05D004251 ORTHO05D005010 1.7e-155 553.1 404 69.3
Psat4g093160 Pisum sativum HOM05D004251 ORTHO05D005010 2.2e-155 552.7 400 69.2
LjContig00448g0013547 Lotus japonicus HOM05D004251 ORTHO05D005010 2.9e-155 552.4 401 70.1
A01p21680 Brassica napus HOM05D004251 ORTHO05D005010 6.4e-155 551.2 401 69.6
BraA01t02077Z Brassica rapa HOM05D004251 ORTHO05D005010 6.4e-155 551.2 401 69.6
FAN26G0083 Fragaria x ananassa HOM05D004251 ORTHO05D005010 6.4e-155 551.2 405 69.1
PSO210G3399 Papaver somniferum HOM05D004251 ORTHO05D005010 1.4e-154 550.1 409 70.9
Sp7g14220 Schrenkiella parvula HOM05D004251 ORTHO05D005010 4.2e-154 548.5 385 70.1
AL8G23350 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 7.1e-154 547.7 400 69.0
BcaC09g50275 Brassica carinata HOM05D004251 ORTHO05D005010 1.2e-153 547.0 402 69.4
C01p27030 Brassica napus HOM05D004251 ORTHO05D005010 1.2e-153 547.0 402 69.4
BolC1t02651H Brassica oleracea HOM05D004251 ORTHO05D005010 1.2e-153 547.0 402 69.4
MD15G1261600 Malus domestica HOM05D004251 ORTHO05D005010 2.7e-153 545.8 411 69.3
CANSAT01G2654 Cannabis sativa HOM05D004251 ORTHO05D005010 7.9e-153 544.3 409 68.5
FAN19G0724 Fragaria x ananassa HOM05D004251 ORTHO05D005010 1.3e-152 543.5 406 68.5
PSO170G5998 Papaver somniferum HOM05D004251 ORTHO05D005010 2.3e-152 542.7 406 70.4
Haze_15087 Corylus avellana HOM05D004251 ORTHO05D005010 3.0e-152 542.3 417 67.1
FvH4_1g13300 Fragaria vesca HOM05D004251 ORTHO05D005010 3.9e-152 542.0 406 68.2
Gorai.003G014800 Gossypium raimondii HOM05D004251 ORTHO05D005010 5.1e-152 541.6 404 69.8
Eucgr.D02612 Eucalyptus grandis HOM05D004251 ORTHO05D005010 8.7e-152 540.8 386 69.4
Gohir.D03G014500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 3.3e-151 538.9 404 69.3
Duzib147G1661 Durio zibethinus HOM05D004251 ORTHO05D005010 1.6e-150 536.6 403 68.7
Thecc.01G035500 Theobroma cacao HOM05D004251 ORTHO05D005010 4.8e-150 535.0 405 68.1
Aqoxy5G01628 Aquilegia oxysepala HOM05D004251 ORTHO05D005010 1.1e-149 533.9 383 72.3
BcaNung00241 Brassica carinata HOM05D004251 ORTHO05D005010 1.1e-149 533.9 401 67.6
Lsat_1_v5_gn_4_152121 Lactuca sativa HOM05D004251 ORTHO05D005010 3.8e-147 525.4 403 68.0
Potri.007G025300 Populus trichocarpa HOM05D004251 ORTHO05D005010 4.9e-147 525.0 404 68.6
ClCG01G019560 Citrullus lanatus HOM05D004251 ORTHO05D005010 1.4e-146 523.5 404 68.1
Lj1g0003281 Lotus japonicus HOM05D004251 ORTHO05D005010 9.3e-146 520.8 401 67.3
LjContig00448g0018994 Lotus japonicus HOM05D004251 ORTHO05D005010 1.2e-145 520.4 401 67.1
Dinv13532 Davidia involucrata HOM05D004251 ORTHO05D005010 1.6e-145 520.0 368 73.6
GSVIVG01018957001 Vitis vinifera HOM05D004251 ORTHO05D005010 7.9e-145 517.7 402 66.2
CsaV3_6G046240 Cucumis sativus L. HOM05D004251 ORTHO05D005010 5.1e-144 515.0 404 66.6
CiPaw.02G018000 Carya illinoinensis HOM05D004251 ORTHO05D005010 6.7e-144 514.6 386 68.1
arahy.Tifrunner.gnm1.ann1.05783X Arachis hypogaea HOM05D004251 ORTHO05D005010 1.5e-143 513.5 405 65.2
Hma1.2p1_0400F.1_g144420 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 1.5e-143 513.5 405 66.4
Sed0017564 Sechium edule HOM05D004251 ORTHO05D005010 3.1e-141 505.8 404 64.9
Ciclev10025284m.g Citrus clementina HOM05D004251 ORTHO05D005010 1.2e-140 503.8 402 64.4
HPP92_017686 Vanilla planifolia HOM05D004251 ORTHO05D005010 1.2e-140 503.8 390 65.6
unitig_21.g20954 Utricularia gibba HOM05D004251 ORTHO05D005010 2.0e-140 503.1 385 69.1
Gorai.003G014700 Gossypium raimondii HOM05D004251 ORTHO05D005010 7.7e-140 501.1 403 64.5
ATR0733G178 Amborella trichopoda HOM05D004251 ORTHO05D005010 1.7e-139 500.0 385 66.2
Eucgr.D01664 Eucalyptus grandis HOM05D004251 ORTHO05D005010 9.4e-138 494.2 414 62.8
PGR102G0408 Punica granatum HOM05D004251 ORTHO05D005010 2.7e-137 492.7 405 63.2
Oeu056756.2 Olea europaea HOM05D004251 ORTHO05D005010 1.0e-136 490.7 464 58.8
Medtr1g034450 Medicago truncatula HOM05D004251 ORTHO05D005010 5.1e-136 488.4 403 63.5
arahy.Tifrunner.gnm1.ann1.BIDD64 Arachis hypogaea HOM05D004251 ORTHO05D005010 3.3e-135 485.7 405 63.2
Prupe.7G154900 Prunus persica HOM05D004251 ORTHO05D005010 4.3e-135 485.3 404 63.1
TPR.G24109 Trifolium pratense HOM05D004251 ORTHO05D005010 9.7e-135 484.2 403 64.0
Zm00001eb232720 Zea mays HOM05D004251 ORTHO05D005010 1.7e-134 483.4 410 62.2
Os12g0631800 Oryza sativa ssp. japonica HOM05D004251 ORTHO05D005010 3.1e-133 479.2 390 64.4
Ca_12487_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.3e-131 473.8 403 61.3
Gohir.D03G014400 Gossypium hirsutum HOM05D004251 ORTHO05D005010 2.9e-131 472.6 403 61.5
FAN28G2031 Fragaria x ananassa HOM05D004251 ORTHO05D005010 3.2e-130 469.2 413 62.2
Phvul.003G253700 Phaseolus vulgaris HOM05D004251 ORTHO05D005010 2.1e-129 466.5 405 63.2
BcaC09g50281 Brassica carinata HOM05D004251 ORTHO05D005010 3.6e-129 465.7 409 61.4
COL.COLO4_22077 Corchorus olitorius HOM05D004251 ORTHO05D005010 1.4e-128 463.8 405 62.5
Lj2C453G4 Lonicera japonica HOM05D004251 ORTHO05D005010 2.4e-125 453.0 400 62.5
Oeu041447.3 Olea europaea HOM05D004251 ORTHO05D005010 2.6e-124 449.5 468 56.2
Pp3c15_20190 Physcomitrium patens HOM05D004251 ORTHO05D005010 2.9e-123 446.0 389 59.4
TPR.G18620 Trifolium pratense HOM05D004251 ORTHO05D005010 8.5e-123 444.5 405 59.0
SGA_v2.0_scaffold614G53203 Striga asiatica HOM05D004251 ORTHO05D005010 5.2e-120 435.3 309 72.2
AagrBONN_evm.TU.Sc2ySwM_228.727 Anthoceros agrestis HOM05D004251 ORTHO05D005010 7.4e-119 431.4 393 57.0
FAN23G1347 Fragaria x ananassa HOM05D004251 ORTHO05D005010 3.7e-118 429.1 402 59.0
SMO194G0022 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 2.2e-115 419.9 387 58.1
Ah.03g140880 Amaranthus hybridus HOM05D004251 ORTHO05D005010 1.6e-113 413.7 299 69.2
Mapoly0014s0043 Marchantia polymorpha HOM05D004251 ORTHO05D005010 1.6e-113 413.7 386 56.7
Atru.chr3.576 Acer truncatum HOM05D004251 ORTHO05D005010 2.1e-113 413.3 323 67.8
Dinv39988 Davidia involucrata HOM05D004251 ORTHO05D005010 1.0e-112 411.0 305 67.9
CDE04G2049 Ceratophyllum demersum HOM05D004251 ORTHO05D005010 1.8e-112 410.2 384 59.6
Oeu051950.1 Olea europaea HOM05D004251 ORTHO05D005010 6.7e-112 408.3 272 75.0
arahy.Tifrunner.gnm1.ann1.UBH4LM Arachis hypogaea HOM05D004251 ORTHO05D005010 1.2e-108 397.5 268 75.4
AUR62007569 Chenopodium quinoa HOM05D004251 ORTHO05D005010 4.2e-106 389.0 415 55.2
SMO358G0577 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 1.8e-104 383.6 397 53.1
QL06p046194 Quercus lobata HOM05D004251 ORTHO05D005010 1.1e-101 374.4 758 35.2
Rhsim10G0122800 Rhododendron simsii HOM05D004251 ORTHO05D005010 5.4e-101 372.1 246 77.2
Cpa.g.sc6.114 Carica papaya HOM05D004251 ORTHO05D005010 8.9e-96 354.8 412 53.4
vmacro12727 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 4.4e-95 352.4 384 56.0
Sc03g0002980 Simmondsia chinensis HOM05D004251 ORTHO05D005010 6.3e-94 348.6 256 68.8
MELO3C007827.2 Cucumis melo HOM05D004251 ORTHO05D005010 4.5e-92 342.4 398 52.0
Gohir.A02G165500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 5.4e-77 292.4 233 63.9
ClCG07G008380 Citrullus lanatus HOM05D004251 ORTHO05D005010 2.1e-76 290.4 212 70.3
AUR62004055 Chenopodium quinoa HOM05D004251 ORTHO05D005010 2.7e-76 290.0 313 56.5
Gohir.A02G165600 Gossypium hirsutum HOM05D004251 ORTHO05D005010 2.7e-76 290.0 233 62.2
SEGI_19545 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 1.7e-70 270.8 243 58.8
PRCOL_00003920 Prasinoderma coloniale HOM05D004251 ORTHO05D005010 4.6e-68 262.7 363 44.6
SEGI_15174 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 3.6e-49 199.9 141 71.6
THA.LOC104821290 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 8.1e-41 172.2 125 67.2
Oeu009415.3 Olea europaea HOM05D004251 ORTHO05D005010 2.2e-38 164.1 213 47.4
Duzib264G0995 Durio zibethinus HOM05D004251 ORTHO05D005010 1.1e-34 151.8 115 66.1
Hund13980 Selenicereus undatus HOM05D004251 ORTHO05D005010 5.5e-29 132.9 119 58.0
AL954U10020 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 1.6e-28 131.3 81 79.0
Atru.chr3.575 Acer truncatum HOM05D004251 ORTHO05D005010 9.7e-26 122.1 84 61.9
Hund13979 Selenicereus undatus HOM05D004251 ORTHO05D005010 2.6e-23 114.0 103 59.2
Zm00001eb293990 Zea mays HOM05D004251 ORTHO05D005010 3.4e-23 113.6 148 45.3
A01p21670 Brassica napus HOM05D004251 ORTHO05D005010 8.5e-22 109.0 82 64.6
BraA01t02076Z Brassica rapa HOM05D004251 ORTHO05D005010 8.5e-22 109.0 82 64.6
vmacro12726 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 3.6e-20 103.6 100 54.0
Zm00001eb412790 Zea mays HOM05D004251 ORTHO05D005010 3.3e-18 97.1 148 40.5
SEGI_32759 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 1.5e-15 88.2 83 51.8
Rhsim10G0122600 Rhododendron simsii HOM05D004251 ORTHO05D005010 1.0e-11 75.5 37 86.5
Thecc.05G109900 Theobroma cacao HOM05D006126 ORTHO05D007792 2.4e-08 64.3 371 23.2
Gohir.D01G122900 Gossypium hirsutum HOM05D006126 ORTHO05D007792 3.1e-08 63.9 365 24.4
Gorai.002G153800 Gossypium raimondii HOM05D006126 ORTHO05D007792 3.1e-08 63.9 365 24.4
Aqoxy2G00644 Aquilegia oxysepala HOM05D006126 ORTHO05D007792 5.3e-08 63.2 372 23.7
SMO141G0109 Selaginella moellendorffii HOM05D006126 ORTHO05D007792 9.1e-08 62.4 370 25.9
Solyc10g081650.2 Solanum lycopersicum HOM05D006126 ORTHO05D007792 9.1e-08 62.4 364 23.9
PGSC0003DMG400028224 Solanum tuberosum HOM05D006126 ORTHO05D007792 1.2e-07 62.0 364 23.9
Gohir.A01G135800 Gossypium hirsutum HOM05D006126 ORTHO05D007792 2.0e-07 61.2 335 24.8
Migut.L01843 Erythranthe guttata HOM05D006126 ORTHO05D007792 3.5e-07 60.5 372 23.9
THA.LOC104823508 Tarenaya hassleriana HOM05D006126 ORTHO05D007792 3.5e-07 60.5 337 23.4
BcaC07g42047 Brassica carinata HOM05D006126 ORTHO05D007792 7.7e-07 59.3 342 24.3
A09p66770 Brassica napus HOM05D006126 ORTHO05D007792 7.7e-07 59.3 342 24.0
C08p50990 Brassica napus HOM05D006126 ORTHO05D007792 7.7e-07 59.3 342 24.3
BolC8t52627H Brassica oleracea HOM05D006126 ORTHO05D007792 7.7e-07 59.3 342 24.3
BraA09t42015Z Brassica rapa HOM05D006126 ORTHO05D007792 7.7e-07 59.3 342 24.0
Pp3c23_1220 Physcomitrium patens HOM05D006126 ORTHO05D007792 7.7e-07 59.3 353 22.7
Psat6g087240 Pisum sativum HOM05D006126 ORTHO05D007792 1.0e-06 58.9 344 23.3
MCO01G655 Micromonas commoda HOM05D001829 ORTHO05D007093 1.7e-06 58.2 329 25.8
Zm00001eb420900 Zea mays HOM05D004251 ORTHO05D015097 1.7e-06 58.2 36 72.2
CiPaw.09G023900 Carya illinoinensis HOM05D006126 ORTHO05D007792 2.2e-06 57.8 378 22.8
Glyma.10G086700 Glycine max HOM05D006126 ORTHO05D007792 2.2e-06 57.8 337 22.0
Sopen10g032160 Solanum pennellii HOM05D006126 ORTHO05D007792 2.2e-06 57.8 331 23.6
Phvul.007G265400 Phaseolus vulgaris HOM05D006126 ORTHO05D007792 3.8e-06 57.0 337 24.3
Sabra16G0067300 Salix brachista HOM05D006126 ORTHO05D007792 3.8e-06 57.0 357 22.4
Medtr1g054965 Medicago truncatula HOM05D006126 ORTHO05D007792 5.0e-06 56.6 334 23.1
TWI53G0494 Tripterygium wilfordii HOM05D006126 ORTHO05D007792 8.5e-06 55.8 348 22.4


User provided reference genes

Program Settings