Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 5.0e-211 737.6 411 100.0
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 2.1e-180 636.0 412 90.0
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 1.2e-164 583.6 413 82.3
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 3.9e-155 552.0 412 78.2
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 6.7e-155 551.2 417 77.7
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 2.8e-153 545.8 412 77.4
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 4.2e-141 505.4 416 75.0
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 2.8e-113 412.9 459 62.1
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 2.4e-112 409.8 428 62.6
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 2.9e-110 402.9 430 62.6
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 1.4e-107 394.0 455 58.0
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 2.6e-106 389.8 419 63.0
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 3.2e-104 382.9 421 59.9
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.6e-103 380.6 422 59.7
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 7.8e-103 378.3 435 57.5
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 3.9e-102 375.9 414 60.4
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 5.6e-101 372.1 462 57.8
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 9.5e-101 371.3 420 60.0
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 2.8e-100 369.8 425 60.5
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 3.6e-100 369.4 425 56.9
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 2.6e-98 363.2 425 57.9
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 4.4e-98 362.5 425 55.8
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 2.2e-97 360.1 373 64.1
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 6.4e-97 358.6 423 56.3
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 1.9e-96 357.1 434 56.5
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 6.0e-95 352.1 420 56.0
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 8.6e-94 348.2 416 55.8
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 1.5e-93 347.4 412 57.3
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.5e-93 347.4 424 53.5
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 4.3e-93 345.9 438 57.5
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 1.6e-92 344.0 411 57.4
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 1.6e-92 344.0 425 57.9
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 3.6e-92 342.8 433 54.5
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 4.7e-92 342.4 427 53.4
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 8.1e-92 341.7 410 58.0
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 1.8e-91 340.5 418 57.7
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 2.3e-91 340.1 410 57.8
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.5e-90 337.4 437 53.3
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 3.4e-90 336.3 416 57.2
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 7.5e-90 335.1 443 56.0
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 9.8e-90 334.7 424 52.1
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 1.3e-89 334.3 423 54.6
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 2.4e-88 330.1 414 56.3
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 4.1e-88 329.3 442 53.4
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 1.2e-87 327.8 429 56.4
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 7.8e-87 325.1 436 53.9
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 2.3e-86 323.6 422 54.5
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 3.9e-86 322.8 441 54.6
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 3.9e-86 322.8 425 55.3
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 1.5e-85 320.9 410 54.9
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 1.5e-85 320.9 410 54.9
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 3.3e-85 319.7 414 52.9
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 4.3e-85 319.3 434 56.5
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 1.2e-84 317.8 428 55.6
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 2.1e-84 317.0 452 54.0
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 4.7e-84 315.8 426 53.8
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 6.2e-84 315.5 423 54.6
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 2.3e-83 313.5 422 54.0
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 2.3e-83 313.5 438 52.3
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 3.1e-83 313.2 423 53.9
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 4.0e-83 312.8 420 54.3
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.0e-83 312.8 420 53.8
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 5.2e-83 312.4 409 52.8
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 5.2e-83 312.4 425 52.2
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 1.5e-82 310.8 437 53.3
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 3.4e-82 309.7 371 59.3
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.4e-82 309.7 421 52.7
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 4.4e-82 309.3 422 52.4
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 7.6e-82 308.5 422 53.6
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 2.9e-81 306.6 444 53.4
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.9e-81 305.8 424 53.3
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 6.4e-81 305.4 425 48.2
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 8.4e-81 305.1 420 55.0
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 5.4e-80 302.4 416 54.3
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 2.7e-79 300.1 424 48.1
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 3.5e-79 299.7 447 51.7
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 4.6e-79 299.3 419 50.6
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 6.0e-79 298.9 417 51.6
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 1.3e-78 297.7 453 51.7
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 6.6e-78 295.4 422 49.8
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 6.6e-78 295.4 454 49.6
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 8.6e-78 295.0 327 61.8
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 1.1e-77 294.7 435 51.0
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 2.8e-76 290.0 452 50.0
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 5.2e-75 285.8 422 49.1
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.3e-73 281.2 345 55.4
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 4.9e-73 279.3 312 59.6
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 4.9e-73 279.3 427 49.4
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.2e-72 276.6 259 64.5
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 5.4e-72 275.8 340 58.5
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 1.2e-71 274.6 408 49.5
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 1.5e-69 267.7 412 48.1
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 5.6e-69 265.8 248 65.3
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 3.6e-68 263.1 420 46.0
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 4.8e-68 262.7 244 65.6
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.4e-64 251.1 344 54.4
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 1.7e-62 244.2 465 42.2
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 5.1e-62 242.7 465 44.1
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 4.3e-61 239.6 178 73.6
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 1.3e-60 238.0 477 43.4
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 1.8e-59 234.2 463 41.7
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 6.9e-59 232.3 171 73.1
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 3.4e-58 229.9 415 41.0
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 1.7e-57 227.6 450 42.0
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 4.9e-57 226.1 450 41.8
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 3.2e-56 223.4 478 39.7
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 5.5e-56 222.6 405 43.2
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 7.1e-56 222.2 468 41.5
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 9.3e-56 221.9 463 42.1
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 2.7e-55 220.3 471 41.8
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 3.5e-55 219.9 456 42.3
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 1.5e-53 214.5 170 68.2
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 9.6e-53 211.8 356 42.7
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 2.8e-52 210.3 288 53.5
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 3.7e-52 209.9 169 68.0
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 2.4e-51 207.2 456 39.9
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.4e-51 207.2 351 41.9
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 3.1e-51 206.8 451 41.0
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 5.8e-50 202.6 388 39.7
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 7.6e-50 202.2 474 38.4
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 5.1e-46 189.5 412 40.8
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 2.5e-45 187.2 142 71.8
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 6.9e-43 179.1 311 42.8
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 1.2e-42 178.3 167 61.7
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.0e-41 175.3 354 38.7
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 4.6e-39 166.4 364 36.0
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.3e-38 164.9 304 37.8
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 5.0e-33 146.4 130 60.0
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 6.5e-33 146.0 180 52.8
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 2.9e-25 120.6 80 82.5
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.4e-21 106.7 86 69.8
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.3e-20 105.1 86 69.8
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 2.2e-20 104.4 120 45.8
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.8e-19 101.3 79 69.6
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.6e-18 98.2 67 73.1
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 9.4e-16 89.0 64 71.9
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 4.8e-12 76.6 276 35.5
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 4.1e-11 73.6 67 53.7
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 7.7e-10 69.3 116 35.3
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 1.3e-09 68.6 222 26.6
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 1.7e-09 68.2 67 50.7
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.9e-09 67.4 48 68.8
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.1e-08 65.5 99 42.4
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 5.5e-08 63.2 107 33.6
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 7.2e-08 62.8 99 39.4
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 1.2e-07 62.0 62 59.7
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 1.6e-07 61.6 67 47.8
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 1.6e-07 61.6 99 38.4
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.6e-07 61.6 99 38.4
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 2.1e-07 61.2 101 32.7
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 2.1e-07 61.2 99 37.4
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.1e-07 61.2 107 33.6
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.7e-07 60.8 99 38.4
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.7e-07 60.8 107 30.8
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 4.7e-07 60.1 99 40.4
Lsat_1_v5_gn_6_68201 Lactuca sativa HOM05D005186 ORTHO05D006278 6.1e-07 59.7 34 85.3
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 8.0e-07 59.3 113 37.2
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 8.0e-07 59.3 99 39.4
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 1.0e-06 58.9 117 30.8
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 1.4e-06 58.5 99 37.4
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 2.3e-06 57.8 99 36.4
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 3.0e-06 57.4 99 36.4
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 3.0e-06 57.4 132 30.3
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 3.0e-06 57.4 113 31.0
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 3.0e-06 57.4 174 25.9
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 4.0e-06 57.0 99 34.3
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 5.2e-06 56.6 99 35.4
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 5.2e-06 56.6 133 29.3
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 5.2e-06 56.6 99 36.4
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 5.2e-06 56.6 99 37.4
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 5.2e-06 56.6 99 35.4
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 6.8e-06 56.2 153 26.8
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 8.8e-06 55.8 100 36.0


User provided reference genes

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