Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 0.0e+00 1140.6 580 100.0
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.6e-311 1072.0 580 95.2
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 2.0e-277 958.7 567 87.7
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.3e-277 958.0 567 87.3
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 5.7e-277 957.2 567 87.5
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 2.4e-267 925.2 552 85.3
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.0e-265 919.8 566 83.6
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.8e-230 802.7 569 71.9
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 2.4e-230 802.4 520 76.7
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.4e-230 802.4 520 77.7
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.0e-229 799.3 520 77.3
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 5.8e-229 797.7 516 75.8
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.2e-228 795.8 520 77.1
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 7.1e-227 790.8 520 76.7
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 7.1e-227 790.8 541 73.8
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 6.0e-226 787.7 573 72.4
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.0e-225 786.9 572 71.0
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 5.6e-224 781.2 522 75.9
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 9.6e-224 780.4 528 74.6
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 1.2e-223 780.0 520 75.4
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.2e-223 780.0 516 75.2
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 6.2e-223 777.7 510 75.1
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.0e-221 772.7 543 70.7
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 3.4e-221 771.9 573 68.2
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 5.8e-221 771.2 521 73.7
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 5.8e-221 771.2 500 76.4
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.9e-220 768.8 546 70.0
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.8e-220 768.5 567 69.7
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 3.8e-220 768.5 524 73.1
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.8e-220 768.5 552 71.2
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 8.4e-220 767.3 561 69.7
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.9e-219 766.1 557 69.7
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 3.2e-219 765.4 519 73.2
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 4.2e-219 765.0 520 74.0
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 4.2e-219 765.0 561 68.4
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 5.4e-219 764.6 516 73.1
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 2.1e-218 762.7 558 69.2
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.5e-218 761.9 550 70.7
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 4.6e-218 761.5 519 72.8
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.0e-217 760.4 517 72.3
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.3e-217 760.0 523 73.2
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 8.7e-217 757.3 558 70.3
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.5e-216 756.5 525 71.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.9e-216 756.1 519 72.6
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.9e-216 756.1 512 73.8
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 2.5e-216 755.7 529 70.1
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 3.3e-216 755.4 521 72.4
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.3e-215 753.4 525 71.2
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 4.8e-215 751.5 520 71.0
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 6.2e-215 751.1 539 70.5
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.1e-214 750.4 556 68.9
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 2.4e-214 749.2 512 71.3
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 3.1e-214 748.8 530 70.8
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.5e-213 746.5 536 71.3
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.5e-213 746.5 531 70.6
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 2.6e-213 745.7 538 69.7
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 2.6e-213 745.7 529 70.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 3.4e-213 745.3 569 67.7
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 4.5e-213 745.0 555 67.0
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.3e-212 743.4 460 78.5
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 3.8e-212 741.9 566 67.8
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 8.4e-212 740.7 533 69.6
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 1.4e-211 740.0 542 68.8
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.9e-211 739.6 555 67.7
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 2.4e-211 739.2 512 71.7
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 4.2e-211 738.4 513 71.9
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 4.2e-211 738.4 569 67.8
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 5.4e-211 738.0 512 70.9
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 5.4e-211 738.0 510 71.2
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 9.3e-211 737.3 512 70.7
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.2e-210 736.9 493 73.0
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.6e-210 736.5 530 69.1
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.1e-210 736.1 512 70.7
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 6.0e-210 734.6 545 69.2
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 7.9e-210 734.2 497 73.4
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 8.7e-209 730.7 524 69.5
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 5.6e-208 728.0 536 69.8
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.6e-207 726.5 516 70.0
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.1e-207 726.1 582 65.3
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 3.7e-207 725.3 537 69.5
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 6.2e-207 724.5 524 71.6
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.8e-206 723.0 538 67.8
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.4e-206 722.6 549 67.9
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 6.9e-206 721.1 525 70.1
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 3.4e-205 718.8 457 76.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 5.8e-205 718.0 549 65.9
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.1e-203 713.8 518 69.5
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 1.4e-203 713.4 464 73.7
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.1e-202 709.5 489 71.0
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.6e-202 708.4 474 74.5
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.0e-201 707.2 429 77.9
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 3.3e-200 702.2 465 73.3
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 5.6e-200 701.4 523 68.3
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 2.1e-199 699.5 613 60.8
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 4.8e-199 698.4 478 72.2
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 3.4e-197 692.2 496 70.6
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 2.5e-184 649.4 519 65.9
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.9e-179 633.3 375 81.6
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 6.1e-178 628.2 529 59.7
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 5.1e-177 625.2 429 71.8
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.6e-162 577.0 383 77.3
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.5e-152 543.9 533 53.3
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.3e-151 540.8 394 69.3
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.1e-150 537.7 516 54.5
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.6e-146 522.7 393 67.2
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 7.5e-144 515.0 438 58.2
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.5e-136 490.7 574 51.9
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.4e-134 484.2 512 50.4
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.0e-129 466.1 574 50.7
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 8.9e-129 464.9 586 50.5
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.2e-126 456.4 574 49.7
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.3e-124 451.1 533 51.6
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-122 444.5 572 49.5
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.0e-116 424.9 456 53.9
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 9.6e-115 418.3 492 46.3
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.0e-108 396.7 556 42.6
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.1e-102 378.3 255 73.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.9e-102 377.5 477 44.4
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.3e-79 301.6 481 39.3
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.9e-78 297.7 177 79.7
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 3.8e-71 273.5 169 76.3
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 4.5e-48 196.8 180 63.3
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.0e-44 185.7 160 61.9
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.7e-37 161.0 134 67.9
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 3.0e-36 157.5 139 59.7
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 8.8e-36 156.0 134 65.7
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.2e-34 151.4 131 58.0
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.7e-31 141.7 82 82.9
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 4.0e-28 130.6 105 60.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 3.5e-24 117.5 125 46.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 5.2e-20 103.6 104 54.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 9.2e-17 92.8 58 74.1
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 5.2e-12 77.0 145 40.7
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 1.9e-09 68.6 70 54.3
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.3e-07 62.4 38 76.3
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 3.9e-07 60.8 152 37.5
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 1.9e-06 58.5 107 45.8
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 5.6e-06 57.0 37 73.0


User provided reference genes

Program Settings