Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.7e-125 452.6 222 100.0
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 7.4e-124 447.2 222 98.2
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 2.7e-118 428.7 222 93.2
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 2.7e-118 428.7 222 91.9
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.4e-114 415.6 222 88.3
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 3.1e-114 415.2 222 88.3
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 6.9e-114 414.1 222 87.8
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 3.9e-101 371.7 222 77.5
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 3.9e-93 345.1 216 76.4
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 6.7e-93 344.4 214 78.5
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 7.4e-92 340.9 216 75.0
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 4.8e-91 338.2 216 76.9
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 4.1e-90 335.1 214 72.9
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 4.1e-90 335.1 214 72.9
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 4.5e-89 331.6 216 75.9
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.7e-88 329.7 211 76.3
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 5.0e-88 328.2 221 71.9
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.1e-87 327.0 218 72.9
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.9e-87 326.2 214 74.3
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 3.2e-87 325.5 218 75.7
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 9.4e-87 323.9 216 74.5
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 1.6e-86 323.2 216 71.8
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 3.6e-86 322.0 220 70.5
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 7.9e-86 320.9 218 71.6
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.0e-85 320.5 220 71.8
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.8e-85 319.7 224 71.0
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 3.0e-85 318.9 224 71.0
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 3.9e-85 318.5 217 70.5
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 9.7e-84 313.9 215 70.7
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 4.8e-83 311.6 212 71.7
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 6.3e-83 311.2 220 68.6
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 8.2e-83 310.8 220 67.7
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 1.4e-82 310.1 220 67.3
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.8e-82 309.7 218 70.6
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.8e-82 309.7 216 71.3
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 4.1e-82 308.5 217 71.9
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 7.0e-82 307.8 216 70.8
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 7.0e-82 307.8 206 73.3
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.2e-81 307.0 210 71.0
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.2e-81 307.0 215 68.4
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.6e-81 306.6 217 69.1
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.0e-81 306.2 210 70.5
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.0e-81 306.2 214 70.1
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.6e-81 305.8 219 66.2
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.6e-81 305.8 210 70.5
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 3.5e-81 305.4 212 66.5
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 3.5e-81 305.4 210 71.4
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 1.0e-80 303.9 217 69.1
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.3e-80 303.5 222 65.3
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 1.7e-80 303.1 221 68.3
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 3.8e-80 302.0 220 70.0
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 6.5e-80 301.2 219 65.3
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 8.5e-80 300.8 222 66.7
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.1e-79 300.4 210 69.5
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.1e-79 300.4 210 69.5
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.2e-79 298.9 210 70.0
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 3.2e-79 298.9 219 66.2
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 5.5e-79 298.1 214 67.3
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 7.2e-79 297.7 218 66.5
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.4e-79 297.4 211 69.2
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.2e-78 297.0 210 67.1
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.2e-78 297.0 214 66.4
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 2.3e-77 292.7 204 70.6
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 5.2e-77 291.6 219 67.6
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.1e-76 290.4 216 63.9
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.6e-76 289.3 218 66.5
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 4.4e-76 288.5 215 65.1
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 5.7e-76 288.1 218 66.5
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 5.7e-76 288.1 215 67.9
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 5.7e-76 288.1 218 66.1
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 7.5e-76 287.7 212 64.2
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 9.7e-76 287.3 216 66.2
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.7e-75 286.6 205 67.3
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 2.2e-75 286.2 218 66.1
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 2.2e-75 286.2 218 66.1
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 2.2e-75 286.2 218 64.7
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 2.8e-75 285.8 215 65.6
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 3.7e-75 285.4 216 63.4
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.8e-75 285.0 195 70.3
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 4.1e-74 282.0 214 66.4
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 5.3e-74 281.6 215 65.6
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 5.3e-74 281.6 214 63.1
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 9.1e-74 280.8 215 65.1
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 1.6e-73 280.0 204 66.7
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 7.7e-73 277.7 216 63.4
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.0e-72 277.3 273 55.3
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.3e-72 276.9 215 61.9
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.7e-72 276.6 218 62.4
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 3.8e-72 275.4 214 60.3
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 1.1e-71 273.9 188 70.7
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.9e-71 273.1 216 65.3
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 7.2e-71 271.2 219 63.9
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 9.4e-71 270.8 209 61.7
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 9.4e-71 270.8 213 60.6
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 8.0e-70 267.7 212 60.4
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 8.0e-70 267.7 212 61.3
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 4.0e-69 265.4 214 59.3
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 6.8e-69 264.6 201 61.2
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 8.8e-69 264.2 216 64.4
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 2.0e-68 263.1 223 59.2
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 6.3e-67 258.1 213 59.6
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.1e-66 257.3 207 62.3
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 7.7e-65 251.1 197 60.4
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 7.7e-65 251.1 197 60.4
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 7.7e-65 251.1 161 73.3
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 1.7e-64 250.0 215 61.9
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.0e-64 248.4 165 72.1
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 2.5e-63 246.1 200 65.0
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 9.5e-63 244.2 215 61.4
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-62 243.8 197 64.0
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 4.7e-62 241.9 214 57.5
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 3.0e-61 239.2 187 64.7
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 4.0e-61 238.8 173 66.5
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 6.8e-61 238.0 168 66.7
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.2e-59 233.0 214 53.3
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.7e-59 232.3 171 64.3
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.4e-58 230.3 214 52.8
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.4e-58 229.6 212 54.7
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 3.1e-58 229.2 214 57.0
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 5.4e-58 228.4 218 52.3
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-56 224.2 205 61.5
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.7e-56 223.4 168 61.3
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.3e-56 223.0 204 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.5e-55 220.3 205 51.2
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.9e-55 219.9 216 57.4
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 7.3e-55 218.0 165 68.5
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 7.3e-55 218.0 211 52.6
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 2.8e-54 216.1 220 55.0
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 2.0e-52 209.9 157 68.2
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.4e-51 204.9 144 68.8
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 8.3e-51 204.5 219 45.7
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 5.4e-50 201.8 202 50.0
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.3e-48 197.2 217 54.4
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-44 184.1 152 54.6
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-43 180.6 217 51.6
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.1e-42 177.6 203 47.8
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.6e-41 173.7 214 46.3
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 6.0e-41 171.8 109 75.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 8.6e-40 167.9 206 41.3
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 4.7e-38 162.2 219 39.3
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 9.8e-36 154.5 95 73.7
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.7e-35 153.7 322 31.4
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.7e-35 152.5 202 43.6
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.1e-34 149.1 126 61.9
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 7.1e-34 148.3 103 70.9
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 1.9e-31 140.2 216 38.0
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.3e-31 138.3 100 64.0
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 4.7e-30 135.6 128 47.7
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 1.8e-29 133.7 212 37.3
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 5.2e-29 132.1 184 41.3
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.4e-26 124.0 175 45.1
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.0e-21 105.9 91 56.0
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 5.8e-20 102.1 84 60.7
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 2.9e-19 99.8 209 39.2
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.3e-15 85.9 73 61.6
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 8.1e-14 81.6 81 50.6
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 2.7e-09 66.6 71 53.5
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 2.5e-07 60.1 45 64.4
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 8.1e-06 55.1 45 62.2


User provided reference genes

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