Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 9.8e-135 483.4 236 100.0
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.2e-119 433.3 236 88.6
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.3e-118 429.9 236 89.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.7e-118 429.5 221 94.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 6.6e-115 417.5 217 91.2
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 3.3e-114 415.2 217 90.8
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 9.6e-114 413.7 217 90.8
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 3.9e-99 365.2 219 76.3
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.1e-97 359.4 219 74.0
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 3.7e-97 358.6 219 74.0
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.1e-96 355.5 220 74.5
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.2e-95 353.6 215 74.4
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.2e-95 353.6 222 72.1
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.7e-94 349.7 232 69.4
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 2.2e-94 349.4 212 74.1
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 4.9e-94 348.2 215 75.8
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.4e-93 346.7 222 73.0
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.4e-93 346.7 215 73.5
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.5e-93 345.9 212 72.6
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 5.5e-93 344.7 218 70.6
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.2e-92 343.6 214 72.4
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.6e-92 343.2 215 70.2
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.1e-92 342.8 221 68.8
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 7.9e-92 340.9 213 72.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.0e-91 340.5 214 70.6
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.0e-91 340.5 214 70.6
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.0e-91 340.5 213 72.3
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.3e-91 340.1 215 70.2
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 2.3e-91 339.3 212 70.3
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 3.0e-91 339.0 213 72.8
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.1e-90 337.0 219 69.9
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.1e-90 337.0 222 69.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.5e-90 336.7 215 69.3
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.3e-90 335.5 217 70.0
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.3e-90 335.5 214 69.6
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 5.7e-90 334.7 215 69.8
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 7.4e-90 334.3 218 69.7
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 7.4e-90 334.3 210 70.5
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 6.2e-89 331.3 213 70.9
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 8.2e-89 330.9 210 70.5
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.4e-88 330.1 216 69.9
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 3.4e-87 325.5 213 69.5
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 2.2e-86 322.8 213 67.1
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.4e-85 320.1 208 71.2
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.9e-85 319.7 212 66.5
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.9e-85 319.7 245 62.9
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 2.5e-85 319.3 231 64.1
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.5e-85 319.3 212 66.5
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 3.2e-85 318.9 212 66.5
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.2e-85 318.9 214 69.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 4.2e-85 318.5 210 68.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 7.1e-85 317.8 208 70.2
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 7.1e-85 317.8 211 69.7
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 9.3e-85 317.4 214 65.9
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 9.3e-85 317.4 208 70.2
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.1e-84 316.2 212 67.5
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 2.7e-84 315.8 213 67.6
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 4.6e-84 315.1 207 67.6
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.6e-84 315.1 212 64.6
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 4.6e-84 315.1 210 66.7
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 7.9e-84 314.3 218 68.8
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 7.9e-84 314.3 212 65.1
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.0e-83 313.9 213 68.1
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.3e-83 313.5 208 67.8
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.9e-83 312.0 222 64.4
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 6.7e-83 311.2 212 66.5
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 8.7e-83 310.8 208 69.2
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.1e-82 310.5 213 66.2
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.1e-82 310.5 214 67.3
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.9e-82 309.7 209 64.6
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 4.3e-82 308.5 211 65.4
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.6e-81 306.6 212 64.2
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.6e-81 306.6 209 66.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.6e-81 306.6 214 64.0
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.8e-81 305.8 214 65.0
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.7e-81 305.4 214 65.4
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.7e-81 305.4 222 61.7
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 4.8e-81 305.1 214 65.4
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 4.8e-81 305.1 214 65.4
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 4.8e-81 305.1 213 63.8
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 8.2e-81 304.3 214 64.5
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.4e-80 303.5 213 63.8
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.4e-80 303.5 212 64.2
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.4e-80 303.5 213 64.8
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.8e-80 303.1 215 63.3
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 2.4e-80 302.8 214 63.6
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 3.1e-80 302.4 211 64.9
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.0e-79 299.7 213 63.4
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 2.0e-79 299.7 215 65.1
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 5.9e-79 298.1 210 63.3
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 7.7e-79 297.7 228 61.4
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 1.0e-78 297.4 207 63.8
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.8e-78 295.4 212 64.2
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-77 293.9 216 63.0
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 1.9e-77 293.1 207 63.8
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.6e-76 288.9 187 67.9
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.6e-76 288.9 201 68.7
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.4e-75 287.0 220 60.5
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.8e-75 286.6 194 68.6
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.7e-73 278.9 194 68.6
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 4.8e-73 278.5 208 57.7
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.1e-72 277.3 215 61.4
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 5.3e-72 275.0 198 64.6
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.2e-71 273.9 204 60.3
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.6e-71 272.7 215 59.5
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 6.1e-68 261.5 176 68.8
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.5e-66 256.9 207 54.6
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.0e-66 256.5 205 56.1
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.0e-63 246.5 199 59.8
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 4.5e-63 245.4 199 57.3
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.2e-61 238.8 153 68.0
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 9.4e-61 237.7 214 46.7
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.7e-60 236.1 163 66.3
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.8e-57 226.1 140 72.9
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 3.7e-57 225.7 210 51.4
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 8.2e-57 224.6 210 51.0
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.0e-55 219.9 142 66.9
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.0e-54 217.6 195 51.8
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.3e-54 217.2 133 72.9
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.9e-54 216.1 211 50.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 6.1e-52 208.4 199 52.8
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 6.8e-51 204.9 173 52.6
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.8e-51 204.5 126 71.4
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 4.8e-49 198.7 208 46.6
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.8e-48 196.8 233 46.8
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.8e-43 178.3 163 50.9
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.0e-38 162.2 206 41.3
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.3e-37 159.5 110 65.5
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 6.1e-36 155.2 110 62.7
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 4.3e-29 132.5 85 67.1
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.1e-28 130.2 217 34.6
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 3.6e-28 129.4 232 35.3
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 8.0e-28 128.3 76 78.9
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.4e-27 127.5 138 50.7
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.4e-26 122.5 211 36.0
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-23 114.4 73 71.2
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 2.0e-18 97.1 115 44.3
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 2.0e-18 97.1 115 44.3
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 5.8e-18 95.5 65 63.1
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.3e-17 94.4 115 42.6
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.2e-16 89.7 211 26.5
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 5.4e-16 89.0 208 26.0
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.5e-15 86.3 212 26.9
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.1e-13 81.3 108 43.5
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.5e-13 80.1 124 39.5
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 4.3e-13 79.3 180 27.8
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.3e-13 79.3 69 53.6
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.6e-12 77.4 68 57.4
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 5.8e-10 68.9 47 63.8
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 2.9e-09 66.6 40 70.0
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 5.4e-08 62.4 173 25.4
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.2e-07 61.2 82 40.2
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 3.5e-07 59.7 82 39.0
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 5.1e-06 55.8 30 83.3


User provided reference genes

Program Settings