Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001339g0060 Nicotiana tabacum HOM05D003328 ORTHO05D003722 2.6e-134 482.6 361 100.0
Nitab4.5_0009899g0010 Nicotiana tabacum HOM05D003328 ORTHO05D003722 4.4e-110 402.1 333 96.4
PGSC0003DMG400001380 Solanum tuberosum HOM05D003328 ORTHO05D003722 3.4e-94 349.4 229 86.0
Solyc02g089250.4 Solanum lycopersicum HOM05D003328 ORTHO05D003722 2.3e-90 336.7 210 90.0
Sopen02g034040 Solanum pennellii HOM05D003328 ORTHO05D003722 5.6e-89 332.0 210 89.0
Peaxi162Scf00020g02335 Petunia axillaris HOM05D003328 ORTHO05D003722 2.9e-85 319.7 230 81.3
CAN.G497.56 Capsicum annuum HOM05D003328 ORTHO05D003722 3.8e-85 319.3 229 80.3
Dinv34907 Davidia involucrata HOM05D003328 ORTHO05D003722 1.8e-50 204.1 245 56.3
Oeu031836.1 Olea europaea HOM05D003328 ORTHO05D003722 8.7e-50 201.8 231 59.3
Oeu062183.1 Olea europaea HOM05D003328 ORTHO05D003722 7.4e-49 198.7 234 56.4
CSS0050346 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 2.4e-47 193.7 259 52.9
COL.COLO4_19736 Corchorus olitorius HOM05D003328 ORTHO05D003722 1.2e-46 191.4 161 64.6
Cc07_g04510 Coffea canephora HOM05D003328 ORTHO05D003722 2.9e-45 186.8 228 49.6
Duzib211G0567 Durio zibethinus HOM05D003328 ORTHO05D003722 6.5e-45 185.7 163 63.2
arahy.Tifrunner.gnm1.ann1.6PTW1V Arachis hypogaea HOM05D003328 ORTHO05D003722 1.9e-44 184.1 212 57.1
arahy.Tifrunner.gnm1.ann1.SVI1UB Arachis hypogaea HOM05D003328 ORTHO05D003722 1.9e-44 184.1 212 57.1
CANSAT64G0201 Cannabis sativa HOM05D003328 ORTHO05D003722 3.2e-44 183.3 252 54.8
QL02p065219 Quercus lobata HOM05D003328 ORTHO05D003722 5.5e-44 182.6 156 64.1
Nitab4.5_0000154g0140 Nicotiana tabacum HOM05D003328 ORTHO05D003722 9.4e-44 181.8 170 61.8
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 9.4e-44 181.8 221 52.9
MSTRG.15433 Avicennia marina HOM05D003328 ORTHO05D003722 1.2e-43 181.4 216 56.5
Nitab4.5_0001434g0120 Nicotiana tabacum HOM05D003328 ORTHO05D003722 1.2e-43 181.4 170 60.6
TPR.G23379 Trifolium pratense HOM05D003328 ORTHO05D003722 2.1e-43 180.6 224 47.8
Glyma.08G251500 Glycine max HOM05D003328 ORTHO05D003722 2.7e-43 180.3 213 55.4
SalBow1G2513 Salvia bowleyana HOM05D003328 ORTHO05D003722 2.7e-43 180.3 225 51.1
Thecc.04G106800 Theobroma cacao HOM05D003328 ORTHO05D003722 2.7e-43 180.3 151 63.6
Hma1.2p1_1837F.1_g304780 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 3.6e-43 179.9 251 53.8
Dinv33868 Davidia involucrata HOM05D003328 ORTHO05D003722 7.9e-43 178.7 234 53.0
Phvul.008G026300 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 7.9e-43 178.7 213 56.8
SGA_v2.0_scaffold148G36453 Striga asiatica HOM05D003328 ORTHO05D003722 7.9e-43 178.7 147 63.3
GSVIVG01036543001 Vitis vinifera HOM05D003328 ORTHO05D003722 7.9e-43 178.7 240 55.0
Atru.chr8.639 Acer truncatum HOM05D003328 ORTHO05D003722 1.0e-42 178.3 156 62.8
Glyma.18G274200 Glycine max HOM05D003328 ORTHO05D003722 1.0e-42 178.3 223 51.1
Thecc.04G107000 Theobroma cacao HOM05D003328 ORTHO05D003722 1.4e-42 177.9 166 59.6
Duzib138G1918 Durio zibethinus HOM05D003328 ORTHO05D003722 1.8e-42 177.6 158 62.0
Ciclev10012100m.g Citrus clementina HOM05D003328 ORTHO05D003722 2.3e-42 177.2 156 62.8
Sabra17G0086600 Salix brachista HOM05D003328 ORTHO05D003722 2.3e-42 177.2 144 65.3
TAR629G1921 Trochodendron aralioides HOM05D003328 ORTHO05D003722 3.0e-42 176.8 164 59.8
MSTRG.2972 Avicennia marina HOM05D003328 ORTHO05D003722 3.9e-42 176.4 152 62.5
Actinidia18081 Actinidia chinensis HOM05D003328 ORTHO05D003722 5.1e-42 176.0 234 57.3
Actinidia26271 Actinidia chinensis HOM05D003328 ORTHO05D003722 5.1e-42 176.0 246 53.3
CiPaw.03G082700 Carya illinoinensis HOM05D003328 ORTHO05D003722 1.1e-41 174.9 172 59.3
Migut.K00883 Erythranthe guttata HOM05D003328 ORTHO05D003722 1.1e-41 174.9 164 58.5
Potri.017G100600 Populus trichocarpa HOM05D003328 ORTHO05D003722 1.5e-41 174.5 151 61.6
Cpa.g.sc541.5 Carica papaya HOM05D003328 ORTHO05D003722 3.3e-41 173.3 162 59.9
Nn3g17524 Nelumbo nucifera HOM05D003328 ORTHO05D003722 3.3e-41 173.3 133 65.4
COL.COLO4_19737 Corchorus olitorius HOM05D003328 ORTHO05D003722 5.7e-41 172.6 169 60.9
Actinidia17606 Actinidia chinensis HOM05D003328 ORTHO05D003722 7.4e-41 172.2 164 61.6
MBI16_g07038_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 9.7e-41 171.8 258 50.4
PGR042G0257 Punica granatum HOM05D003328 ORTHO05D003722 1.3e-40 171.4 164 57.3
Atru.chr8.632 Acer truncatum HOM05D003328 ORTHO05D003722 1.7e-40 171.0 164 60.4
Atru.chr8.633 Acer truncatum HOM05D003328 ORTHO05D003722 1.7e-40 171.0 164 59.8
Prupe.3G248600 Prunus persica HOM05D003328 ORTHO05D003722 1.7e-40 171.0 156 60.9
Manes.02G059700 Manihot esculenta HOM05D003328 ORTHO05D003722 2.2e-40 170.6 157 59.2
PSO782G2223 Papaver somniferum HOM05D003328 ORTHO05D003722 2.2e-40 170.6 135 68.1
PSO063G5324 Papaver somniferum HOM05D003328 ORTHO05D003722 4.8e-40 169.5 135 68.1
Gohir.D07G186300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.1e-39 168.3 144 59.7
RcHm_v2.0_Chr2g0164801 Rosa chinensis HOM05D003328 ORTHO05D003722 1.1e-39 168.3 233 52.8
TWI34G1159 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 1.1e-39 168.3 170 57.6
Gohir.A07G179500 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.4e-39 167.9 144 60.4
Peaxi162Scf01002g00114 Petunia axillaris HOM05D003328 ORTHO05D003722 4.1e-39 166.4 141 62.4
Gorai.001G206900 Gossypium raimondii HOM05D003328 ORTHO05D003722 6.9e-39 165.6 144 59.0
Psat3g203200 Pisum sativum HOM05D003328 ORTHO05D003722 6.9e-39 165.6 215 50.7
Potri.004G114300 Populus trichocarpa HOM05D003328 ORTHO05D003722 6.9e-39 165.6 137 62.8
Lj4A124T57 Lonicera japonica HOM05D003328 ORTHO05D003722 1.2e-38 164.9 229 53.3
Lj1g0001231 Lotus japonicus HOM05D003328 ORTHO05D003722 2.0e-38 164.1 226 54.4
Gohir.D07G186200 Gossypium hirsutum HOM05D003328 ORTHO05D003722 2.6e-38 163.7 128 66.4
Gorai.001G206700 Gossypium raimondii HOM05D003328 ORTHO05D003722 2.6e-38 163.7 128 66.4
CAN.G427.4 Capsicum annuum HOM05D003328 ORTHO05D003722 3.4e-38 163.3 165 56.4
MD09G1075500 Malus domestica HOM05D003328 ORTHO05D003722 3.4e-38 163.3 145 64.8
Hma1.2p1_0448F.1_g154830 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 4.5e-38 162.9 231 48.1
vmacro05612 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 4.5e-38 162.9 242 55.0
Rhsim08G0077700 Rhododendron simsii HOM05D003328 ORTHO05D003722 7.7e-38 162.2 176 55.1
Eucgr.J01410 Eucalyptus grandis HOM05D003328 ORTHO05D003722 1.0e-37 161.8 145 60.0
Rhsim10G0059400 Rhododendron simsii HOM05D003328 ORTHO05D003722 1.0e-37 161.8 249 51.0
MD16G1014300 Malus domestica HOM05D003328 ORTHO05D003722 1.3e-37 161.4 145 64.1
MD09G1074600 Malus domestica HOM05D003328 ORTHO05D003722 1.7e-37 161.0 129 65.9
MD17G1066000 Malus domestica HOM05D003328 ORTHO05D003722 1.7e-37 161.0 139 65.5
Gohir.A07G179300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 2.2e-37 160.6 128 64.8
MD09G1075400 Malus domestica HOM05D003328 ORTHO05D003722 2.2e-37 160.6 134 64.9
Duzib138G1365 Durio zibethinus HOM05D003328 ORTHO05D003722 2.9e-37 160.2 166 54.2
FAN14G2959 Fragaria x ananassa HOM05D003328 ORTHO05D003722 6.5e-37 159.1 155 56.8
Rhsim08G0077500 Rhododendron simsii HOM05D003328 ORTHO05D003722 8.5e-37 158.7 176 54.0
CiPaw.04G052000 Carya illinoinensis HOM05D003328 ORTHO05D003722 1.1e-36 158.3 257 50.2
TWI60G0197 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 1.1e-36 158.3 172 55.2
FAN05G3920 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.4e-36 157.9 229 51.1
Sabra04G0071400 Salix brachista HOM05D003328 ORTHO05D003722 1.9e-36 157.5 144 59.0
Sp6g28340 Schrenkiella parvula HOM05D003328 ORTHO05D003722 1.9e-36 157.5 221 54.3
MD09G1075000 Malus domestica HOM05D003328 ORTHO05D003722 2.5e-36 157.1 165 55.8
Hund13673 Selenicereus undatus HOM05D003328 ORTHO05D003722 2.5e-36 157.1 147 57.1
vmacro18125 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 2.5e-36 157.1 162 56.8
FvH4_6g46330 Fragaria vesca HOM05D003328 ORTHO05D003722 3.2e-36 156.8 155 56.1
Medtr7g016950 Medicago truncatula HOM05D003328 ORTHO05D003722 3.2e-36 156.8 213 47.4
Aqoxy1G03531 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 4.2e-36 156.4 121 64.5
Aqoxy3G03730 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 4.2e-36 156.4 252 46.0
Prupe.3G248700 Prunus persica HOM05D003328 ORTHO05D003722 4.2e-36 156.4 128 64.1
FAN09G2798 Fragaria x ananassa HOM05D003328 ORTHO05D003722 5.5e-36 156.0 136 61.8
Aqoxy3G03729 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 2.1e-35 154.1 141 58.2
AUR62023157 Chenopodium quinoa HOM05D003328 ORTHO05D003722 3.6e-35 153.3 123 63.4
A02p03220 Brassica napus HOM05D003328 ORTHO05D003722 4.7e-35 152.9 216 51.4
ECA232G1221 Erigeron canadensis HOM05D003328 ORTHO05D003722 1.4e-34 151.4 238 42.4
DCAR_025456 Daucus carota HOM05D003328 ORTHO05D003722 3.9e-34 149.8 165 52.1
AUR62009478 Chenopodium quinoa HOM05D003328 ORTHO05D003722 5.2e-34 149.4 138 57.2
BcaNung02204 Brassica carinata HOM05D003328 ORTHO05D003722 6.7e-34 149.1 216 48.6
Lalb_Chr02g0158801 Lupinus albus HOM05D003328 ORTHO05D003722 1.1e-33 148.3 131 58.8
PGSC0003DMG400001028 Solanum tuberosum HOM05D003328 ORTHO05D003722 2.0e-33 147.5 162 54.3
C02p07970 Brassica napus HOM05D003328 ORTHO05D003722 2.6e-33 147.1 148 58.8
CsaV3_5G038710 Cucumis sativus L. HOM05D003328 ORTHO05D003722 2.6e-33 147.1 160 53.8
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.3e-33 146.7 157 51.6
A10p23250 Brassica napus HOM05D003328 ORTHO05D003722 3.3e-33 146.7 221 47.1
BraA02t05293Z Brassica rapa HOM05D003328 ORTHO05D003722 3.3e-33 146.7 212 48.6
BraA10t44393Z Brassica rapa HOM05D003328 ORTHO05D003722 3.3e-33 146.7 221 47.1
BcaC03g18449 Brassica carinata HOM05D003328 ORTHO05D003722 4.4e-33 146.4 148 58.1
BolC2t06720H Brassica oleracea HOM05D003328 ORTHO05D003722 4.4e-33 146.4 148 58.1
Thhalv10013771m.g Eutrema salsugineum HOM05D003328 ORTHO05D003722 4.4e-33 146.4 220 48.2
DCAR_011012 Daucus carota HOM05D003328 ORTHO05D003722 1.3e-32 144.8 144 56.9
Sed0005495 Sechium edule HOM05D003328 ORTHO05D003722 1.3e-32 144.8 158 55.7
Hund16236 Selenicereus undatus HOM05D003328 ORTHO05D003722 1.7e-32 144.4 107 62.6
C09p61320 Brassica napus HOM05D003328 ORTHO05D003722 2.2e-32 144.1 218 52.3
Sc11g0008840 Simmondsia chinensis HOM05D003328 ORTHO05D003722 2.8e-32 143.7 245 46.1
Carub.0006s1393 Capsella rubella HOM05D003328 ORTHO05D003722 4.8e-32 142.9 223 48.4
BolC9t58973H Brassica oleracea HOM05D003328 ORTHO05D003722 8.2e-32 142.1 218 50.5
Lj2g0016580 Lotus japonicus HOM05D003328 ORTHO05D003722 1.4e-31 141.4 143 57.3
MBI19_g00148_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 1.8e-31 141.0 166 51.2
MELO3C022051.2 Cucumis melo HOM05D003328 ORTHO05D003722 4.1e-31 139.8 159 53.5
Solyc03g046580.1 Solanum lycopersicum HOM05D003328 ORTHO05D003722 7.0e-31 139.0 168 50.6
Lsat_1_v5_gn_4_173421 Lactuca sativa HOM05D003328 ORTHO05D003722 2.0e-30 137.5 231 44.2
CARHR197550 Cardamine hirsuta HOM05D003328 ORTHO05D003722 3.5e-30 136.7 213 49.3
Sopen03g010780 Solanum pennellii HOM05D003328 ORTHO05D003722 3.5e-30 136.7 168 50.0
RcHm_v2.0_Chr2g0164841 Rosa chinensis HOM05D003328 ORTHO05D003722 4.5e-30 136.3 134 59.7
AT5G15780 Arabidopsis thaliana HOM05D003328 ORTHO05D003722 5.9e-30 136.0 118 62.7
CSS0002115 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 1.0e-29 135.2 158 55.7
CSS0026022 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 1.0e-29 135.2 158 55.7
AL6G26620 Arabidopsis lyrata HOM05D003328 ORTHO05D003722 2.2e-29 134.0 224 42.9
HanXRQChr15g0464801 Helianthus annuus HOM05D003328 ORTHO05D003722 2.2e-29 134.0 163 51.5
Gohir.A11G159900 Gossypium hirsutum HOM05D003328 ORTHO05D003722 5.0e-29 132.9 153 52.9
ClCG07G016060 Citrullus lanatus HOM05D003328 ORTHO05D003722 6.5e-29 132.5 225 48.4
DCAR_025455 Daucus carota HOM05D003328 ORTHO05D003722 1.1e-28 131.7 169 49.1
Glyma.19G035600 Glycine max HOM05D003328 ORTHO05D003722 1.1e-28 131.7 156 49.4
CsaV3_4G010050 Cucumis sativus L. HOM05D003328 ORTHO05D003722 3.2e-28 130.2 108 64.8
Glyma.19G035700 Glycine max HOM05D003328 ORTHO05D003722 3.2e-28 130.2 157 48.4
Medtr6g015995 Medicago truncatula HOM05D003328 ORTHO05D003722 5.5e-28 129.4 147 49.7
THA.LOC104820977 Tarenaya hassleriana HOM05D003328 ORTHO05D003722 7.2e-28 129.0 211 48.8
Gohir.D11G166000 Gossypium hirsutum HOM05D003328 ORTHO05D003722 9.4e-28 128.6 153 51.0
ClCG11G004980 Citrullus lanatus HOM05D003328 ORTHO05D003722 1.2e-27 128.3 128 54.7
Gorai.007G177000 Gossypium raimondii HOM05D003328 ORTHO05D003722 3.6e-27 126.7 150 51.3
Glyma.13G051700 Glycine max HOM05D003328 ORTHO05D003722 6.1e-27 125.9 139 52.5
HPP92_008278 Vanilla planifolia HOM05D003328 ORTHO05D003722 6.1e-27 125.9 128 53.9
FvH4_6g46340 Fragaria vesca HOM05D003328 ORTHO05D003722 1.0e-26 125.2 137 56.9
FAN14G4737 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.0e-26 125.2 137 56.9
Glyma.13G051900 Glycine max HOM05D003328 ORTHO05D003722 1.0e-26 125.2 209 38.8
Aa31LG11G13800 Aethionema arabicum HOM05D003328 ORTHO05D003722 1.4e-26 124.8 150 50.7
FAN09G3792 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.4e-26 124.8 123 59.3
FAN02G1536 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.8e-26 124.4 104 66.3
TPR.G15938 Trifolium pratense HOM05D003328 ORTHO05D003722 1.8e-26 124.4 153 49.0
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 3.0e-26 123.6 156 44.9
FAN05G0575 Fragaria x ananassa HOM05D003328 ORTHO05D003722 4.0e-26 123.2 123 59.3
HanXRQChr15g0489341 Helianthus annuus HOM05D003328 ORTHO05D003722 4.0e-26 123.2 229 44.1
Phvul.004G042700 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 8.8e-26 122.1 158 46.8
Sed0000331 Sechium edule HOM05D003328 ORTHO05D003722 1.2e-25 121.7 123 56.1
MELO3C018892.2 Cucumis melo HOM05D003328 ORTHO05D003722 2.6e-25 120.6 108 60.2
VMungo0464G0668 Vigna mungo HOM05D003328 ORTHO05D003722 2.6e-25 120.6 209 38.3
Glyma.19G034900 Glycine max HOM05D003328 ORTHO05D003722 4.4e-25 119.8 214 36.0
Phvul.004G042600 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 9.7e-25 118.6 157 42.7
arahy.Tifrunner.gnm1.ann1.JWHM9L Arachis hypogaea HOM05D003328 ORTHO05D003722 2.2e-24 117.5 131 49.6
arahy.Tifrunner.gnm1.ann1.WJSS10 Arachis hypogaea HOM05D003328 ORTHO05D003722 4.8e-24 116.3 121 50.4
VMungo0464G1663 Vigna mungo HOM05D003328 ORTHO05D003722 1.2e-22 111.7 137 46.7
Phvul.004G042800 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 1.3e-21 108.2 150 42.0
SalBow1G5190 Salvia bowleyana HOM05D003328 ORTHO05D003722 2.9e-21 107.1 138 48.6
HanXRQChr14g0452501 Helianthus annuus HOM05D003328 ORTHO05D003722 1.6e-19 101.3 152 44.7
BcaC04g18938 Brassica carinata HOM05D003328 ORTHO05D003722 4.0e-18 96.7 212 43.4
ECA238G2003 Erigeron canadensis HOM05D003328 ORTHO05D003722 1.7e-16 91.3 148 41.9
Lsat_1_v5_gn_2_90181 Lactuca sativa HOM05D003328 ORTHO05D003722 1.1e-15 88.6 112 46.4
SEGI_16578 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.4e-15 87.4 154 37.0
PGR004G1231 Punica granatum HOM05D003328 ORTHO05D003722 3.5e-14 83.6 158 34.2
SEGI_33280 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 4.5e-14 83.2 165 37.0
SEGI_34452 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 4.5e-14 83.2 165 37.6
Sed0002688 Sechium edule HOM05D003328 ORTHO05D003722 1.3e-13 81.6 85 50.6
ATR0827G162 Amborella trichopoda HOM05D003328 ORTHO05D003722 2.0e-09 67.8 74 52.7


User provided reference genes

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