Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.4e-40 167.2 81 100.0
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-32 142.5 81 86.4
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.8e-32 142.1 71 95.8
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.8e-32 142.1 81 86.4
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.8e-32 142.1 81 86.4
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 5.4e-32 140.6 79 86.1
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 5.4e-32 140.6 81 85.2
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.6e-31 139.0 81 85.2
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 1.6e-31 139.0 79 86.1
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.7e-31 138.3 81 86.4
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.5e-31 137.9 79 84.8
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.9e-30 134.8 79 82.3
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 6.6e-30 133.7 81 81.5
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 5.7e-26 120.6 81 71.6
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 5.7e-26 120.6 81 71.6
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 5.7e-26 120.6 81 71.6
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 9.8e-26 119.8 98 64.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 1.7e-25 119.0 81 67.9
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 3.7e-25 117.9 81 67.9
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 6.4e-25 117.1 81 70.4
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 69.1
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 69.1
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 65.4
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 65.4
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 67.9
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 66.7
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.4e-24 115.2 81 69.1
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.4e-24 115.2 81 67.9
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.2e-24 114.8 81 67.9
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.2e-24 114.8 81 71.6
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 65.4
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 65.4
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 69.1
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 7.0e-24 113.6 82 70.7
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 9.2e-24 113.2 81 70.4
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 9.2e-24 113.2 81 66.7
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 9.2e-24 113.2 80 70.0
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.2e-23 112.8 81 67.9
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.2e-23 112.8 81 65.4
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-23 112.8 81 67.9
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.2e-23 112.8 81 70.4
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 67.9
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 66.7
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.7e-23 111.7 81 70.4
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 2.7e-23 111.7 82 65.9
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 3.5e-23 111.3 81 64.2
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.5e-23 111.3 81 64.2
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.5e-23 111.3 81 64.2
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.6e-23 110.9 81 69.1
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 7.8e-23 110.2 81 65.4
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.3e-22 109.4 81 64.2
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.3e-22 109.4 81 63.0
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.3e-22 109.4 81 65.4
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.7e-22 109.0 81 61.7
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.7e-22 109.0 81 66.7
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 2.3e-22 108.6 79 62.0
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 2.3e-22 108.6 81 64.2
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 3.0e-22 108.2 79 65.8
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 3.0e-22 108.2 83 66.3
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 3.9e-22 107.8 81 63.0
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 3.9e-22 107.8 81 66.7
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 5.0e-22 107.5 81 66.7
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 5.0e-22 107.5 81 61.7
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 5.0e-22 107.5 81 63.0
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 5.0e-22 107.5 81 64.2
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 6.6e-22 107.1 81 63.0
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 6.6e-22 107.1 81 65.4
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 6.6e-22 107.1 79 64.6
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.5e-21 105.9 81 59.3
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 1.9e-21 105.5 81 64.2
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.9e-21 105.5 81 64.2
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.9e-21 105.5 79 63.3
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 2.5e-21 105.1 80 62.5
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 5.6e-21 104.0 81 59.3
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 5.6e-21 104.0 53 86.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 7.3e-21 103.6 63 74.6
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 7.3e-21 103.6 63 73.0
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 7.3e-21 103.6 81 64.2
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 9.5e-21 103.2 63 73.0
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 9.5e-21 103.2 61 80.3
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 9.5e-21 103.2 81 66.7
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 1.2e-20 102.8 51 88.2
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.6e-20 102.4 81 61.7
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.6e-20 102.4 74 68.9
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.1e-20 102.1 62 74.2
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.1e-20 102.1 81 56.8
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 2.1e-20 102.1 69 69.6
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.8e-20 101.7 51 86.3
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.8e-20 101.7 59 79.7
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 2.8e-20 101.7 81 59.3
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.6e-20 101.3 62 74.2
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 3.6e-20 101.3 53 84.9
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 3.6e-20 101.3 81 61.7
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 6.2e-20 100.5 63 74.6
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 6.2e-20 100.5 79 57.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 8.0e-20 100.1 56 80.4
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 8.0e-20 100.1 76 64.5
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 8.0e-20 100.1 76 64.5
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 8.0e-20 100.1 76 64.5
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 8.0e-20 100.1 51 84.3
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 8.0e-20 100.1 81 61.7
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 8.0e-20 100.1 83 62.7
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 8.0e-20 100.1 82 59.8
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 8.0e-20 100.1 77 66.2
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.1e-19 99.8 73 65.8
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.1e-19 99.8 76 63.2
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.1e-19 99.8 61 72.1
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.1e-19 99.8 68 66.2
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.4e-19 99.4 51 84.3
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.4e-19 99.4 51 84.3
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.4e-19 99.4 60 73.3
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 2.3e-19 98.6 61 73.8
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 3.1e-19 98.2 48 91.7
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 4.0e-19 97.8 72 66.7
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 4.0e-19 97.8 82 59.8
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 4.0e-19 97.8 82 59.8
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 5.2e-19 97.4 60 71.7
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 5.2e-19 97.4 81 58.0
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 5.2e-19 97.4 66 74.2
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 5.2e-19 97.4 51 82.4
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 6.8e-19 97.1 81 60.5
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 6.8e-19 97.1 75 65.3
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 6.8e-19 97.1 46 91.3
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 8.9e-19 96.7 59 72.9
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.2e-18 96.3 50 86.0
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.5e-18 95.9 76 61.8
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.5e-18 95.9 76 61.8
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.5e-18 95.9 70 67.1
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 2.0e-18 95.5 48 83.3
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 2.0e-18 95.5 75 64.0
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.6e-18 95.1 73 61.6
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.6e-18 95.1 73 61.6
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 3.4e-18 94.7 55 72.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 3.4e-18 94.7 55 72.7
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.4e-18 94.7 80 57.5
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 7.5e-18 93.6 60 68.3
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 7.5e-18 93.6 72 66.7
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.7e-17 92.4 46 84.8
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.7e-17 92.4 46 84.8
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.9e-17 90.9 70 62.9
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 6.4e-17 90.5 43 90.7
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.9e-16 89.0 92 53.3
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 7.0e-16 87.0 46 78.3
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 7.0e-16 87.0 82 53.7
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.6e-15 85.9 47 74.5
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.5e-15 84.7 75 54.7
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.0e-15 84.0 91 50.5
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 3.0e-14 81.6 55 69.1
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 6.6e-14 80.5 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.5e-13 78.6 43 76.7
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 2.6e-10 68.6 60 61.7
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.6e-10 68.6 57 61.4
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.9e-08 62.4 57 56.1
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.3e-06 56.2 46 58.7


User provided reference genes

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