Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 9.3e-65 250.0 120 100.0
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.5e-59 232.6 120 91.7
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 1.7e-58 229.2 120 90.0
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 8.4e-58 226.9 120 89.2
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.5e-57 225.3 119 88.2
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.7e-55 216.9 104 98.1
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 2.2e-53 212.2 115 85.2
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.8e-53 211.1 115 82.6
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 6.3e-53 210.7 115 82.6
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.3e-53 210.7 115 82.6
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.1e-52 209.9 115 81.7
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.4e-52 208.8 115 82.6
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.1e-52 208.0 115 81.7
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 4.1e-52 208.0 117 82.1
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.3e-52 207.6 115 82.6
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 6.9e-52 207.2 115 80.9
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.0e-52 206.8 115 82.6
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 9.0e-52 206.8 115 82.6
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.5e-51 206.1 114 81.6
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.5e-51 206.1 112 84.8
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.0e-51 205.7 115 81.7
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.4e-51 204.9 111 83.8
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 3.4e-51 204.9 115 83.5
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 4.5e-51 204.5 114 81.6
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.5e-51 204.5 115 80.9
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.9e-51 204.1 115 80.9
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 5.9e-51 204.1 115 81.7
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 5.9e-51 204.1 114 81.6
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 7.7e-51 203.8 115 81.7
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.0e-50 203.4 116 82.8
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.0e-50 203.4 114 80.7
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-50 203.4 115 80.9
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.7e-50 202.6 115 80.0
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.7e-50 202.6 115 80.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.2e-50 202.2 115 80.0
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.2e-50 202.2 111 82.9
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.9e-50 201.8 115 80.0
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 2.9e-50 201.8 114 80.7
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 3.8e-50 201.4 115 79.1
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 5.0e-50 201.1 115 79.1
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.0e-50 201.1 115 80.9
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 6.5e-50 200.7 107 84.1
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 8.5e-50 200.3 111 81.1
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.1e-49 199.9 114 79.8
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 81.2
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.4e-49 199.5 115 79.1
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 79.5
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.9e-49 199.1 112 79.5
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.9e-49 199.1 111 82.0
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.5e-49 198.7 112 79.5
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.2e-49 198.4 115 78.3
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.2e-49 198.4 115 78.3
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 4.2e-49 198.0 115 80.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 5.5e-49 197.6 111 81.1
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 7.2e-49 197.2 112 80.4
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 9.4e-49 196.8 110 79.1
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.2e-48 196.4 115 74.8
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.6e-48 196.1 114 78.9
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.6e-48 196.1 119 76.5
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.1e-48 195.7 112 80.4
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 3.6e-48 194.9 111 81.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 3.6e-48 194.9 111 81.1
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.6e-48 194.9 112 79.5
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 4.6e-48 194.5 116 78.4
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 6.1e-48 194.1 112 79.5
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 6.1e-48 194.1 108 83.3
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 7.9e-48 193.7 115 78.3
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 7.9e-48 193.7 115 78.3
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 7.9e-48 193.7 115 78.3
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 7.9e-48 193.7 115 78.3
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 7.9e-48 193.7 107 82.2
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.4e-47 193.0 110 79.1
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.8e-47 192.6 115 78.3
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.3e-47 192.2 107 82.2
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 77.4
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 77.4
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.3e-47 192.2 112 77.7
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 77.4
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 2.3e-47 192.2 113 77.0
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 3.0e-47 191.8 115 77.4
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 3.0e-47 191.8 115 77.4
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.9e-47 191.4 112 77.7
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 5.1e-47 191.0 114 77.2
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 77.4
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 76.5
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 76.5
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 76.5
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 76.5
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 76.5
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 76.5
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 5.1e-47 191.0 107 81.3
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.5e-46 189.5 117 75.2
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 2.0e-46 189.1 115 78.3
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 3.3e-46 188.3 115 75.7
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.3e-46 188.0 107 81.3
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 5.7e-46 187.6 115 73.0
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 7.4e-46 187.2 119 79.8
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.7e-45 186.0 114 76.3
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.7e-45 186.0 104 83.7
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.7e-45 186.0 107 79.4
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 2.2e-45 185.7 115 75.7
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 2.2e-45 185.7 107 78.5
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 6.3e-45 184.1 108 78.7
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.1e-44 183.3 136 65.4
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 9.1e-44 180.3 112 72.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 5.9e-43 177.6 105 77.1
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 2.2e-42 175.6 110 71.8
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 6.5e-42 174.1 105 76.2
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 6.5e-42 174.1 150 59.3
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 8.5e-42 173.7 109 68.8
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.1e-41 173.3 105 74.3
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.4e-41 172.9 179 53.1
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.5e-41 172.2 95 84.2
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 3.2e-41 171.8 131 63.4
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.2e-41 171.4 104 73.1
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.2e-41 171.4 104 73.1
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 7.2e-41 170.6 102 77.5
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.2e-40 169.9 103 73.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 1.4e-39 166.4 101 73.3
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 5.7e-38 161.0 101 69.3
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.4e-36 155.6 91 79.1
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.2e-35 153.3 85 84.7
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 7.2e-33 144.1 107 59.8
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 4.7e-32 141.4 114 63.2
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.4e-31 139.8 112 56.2
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 1.8e-31 139.4 112 55.4
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.3e-30 135.2 62 98.4
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 4.8e-29 131.3 115 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 4.5e-27 124.8 115 51.3
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-26 120.6 104 51.9
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 4.7e-24 114.8 57 82.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.3e-23 112.5 60 80.0
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 2.6e-22 109.0 57 77.2
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.7e-22 107.1 85 61.2
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.2e-21 105.9 99 50.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 8.3e-21 104.0 57 78.9
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.1e-20 103.6 95 51.6
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 2.4e-20 102.4 113 49.6
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 9.1e-20 100.5 153 41.2
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 6.5e-18 94.4 58 84.5
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 8.5e-18 94.0 83 60.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 8.5e-18 94.0 55 83.6
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 8.5e-18 94.0 96 46.9
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 8.0e-16 87.4 58 77.6
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.7e-13 79.7 55 65.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.7e-11 72.4 46 67.4
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 7.2e-09 64.3 87 36.8
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 4.0e-07 58.5 78 46.2


User provided reference genes

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