Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.4e-39 164.5 79 100.0
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.3e-35 151.8 87 87.4
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.6e-33 145.6 87 83.9
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.4e-32 142.5 87 82.8
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.1e-32 141.4 87 81.6
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.2e-31 139.4 87 81.6
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.0e-31 138.7 87 77.0
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.9e-29 132.1 79 79.7
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.9e-29 132.1 79 79.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.9e-29 132.1 79 79.7
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.7e-27 125.6 86 73.3
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.1e-25 118.6 80 71.2
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 3.6e-25 117.9 86 69.8
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.4e-24 115.9 84 71.4
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 2.4e-24 115.2 86 65.1
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 3.1e-24 114.8 84 67.9
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 6.9e-24 113.6 82 67.1
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 6.9e-24 113.6 82 69.5
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 6.9e-24 113.6 84 70.2
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 9.0e-24 113.2 82 68.3
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 9.0e-24 113.2 86 62.8
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.2e-23 112.8 80 68.8
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.0e-23 112.1 83 69.9
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 2.6e-23 111.7 79 67.1
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.4e-23 111.3 85 65.9
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 3.4e-23 111.3 86 65.1
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.4e-23 111.3 85 62.4
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.8e-23 110.5 85 65.9
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 7.6e-23 110.2 82 67.1
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 9.9e-23 109.8 103 57.3
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.9e-23 109.8 82 67.1
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.9e-23 109.8 82 67.1
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.3e-22 109.4 73 71.2
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.3e-22 109.4 82 64.6
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 2.9e-22 108.2 82 61.0
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 3.8e-22 107.8 80 66.2
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.8e-22 107.8 82 63.4
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 3.8e-22 107.8 85 62.4
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 3.8e-22 107.8 85 64.7
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 3.8e-22 107.8 82 64.6
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 4.9e-22 107.5 82 63.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 6.4e-22 107.1 86 64.0
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 6.4e-22 107.1 67 73.1
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 6.4e-22 107.1 86 59.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 6.4e-22 107.1 74 66.2
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 8.4e-22 106.7 85 64.7
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.4e-21 105.9 82 61.0
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.4e-21 105.9 82 61.0
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.4e-21 105.9 82 62.2
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.4e-21 105.9 87 62.1
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.9e-21 105.5 82 63.4
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.9e-21 105.5 67 73.1
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.9e-21 105.5 78 65.4
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.4e-21 105.1 74 64.9
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.4e-21 105.1 74 64.9
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 2.4e-21 105.1 83 62.7
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.2e-21 104.8 85 62.4
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 5.4e-21 104.0 85 63.5
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 5.4e-21 104.0 85 62.4
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 7.1e-21 103.6 82 63.4
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 7.1e-21 103.6 82 63.4
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 7.1e-21 103.6 82 63.4
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 7.1e-21 103.6 82 59.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 7.1e-21 103.6 82 64.6
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 7.1e-21 103.6 82 61.0
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 7.1e-21 103.6 79 63.3
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 9.3e-21 103.2 88 60.2
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 9.3e-21 103.2 84 59.5
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 9.3e-21 103.2 82 64.6
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.2e-20 102.8 79 62.0
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.2e-20 102.8 82 64.6
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.2e-20 102.8 80 65.0
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.6e-20 102.4 85 63.5
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.6e-20 102.4 85 63.5
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.6e-20 102.4 82 62.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.6e-20 102.4 86 58.1
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.1e-20 102.1 82 59.8
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.1e-20 102.1 82 59.8
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 2.7e-20 101.7 82 59.8
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.7e-20 101.7 85 62.4
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.5e-20 101.3 80 62.5
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 3.5e-20 101.3 75 65.3
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.5e-20 101.3 82 64.6
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 3.5e-20 101.3 66 71.2
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 4.6e-20 100.9 82 62.2
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 6.0e-20 100.5 69 66.7
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 6.0e-20 100.5 69 66.7
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 6.0e-20 100.5 82 61.0
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 6.0e-20 100.5 82 61.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 6.0e-20 100.5 82 61.0
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 7.8e-20 100.1 82 62.2
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 7.8e-20 100.1 106 50.0
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.3e-19 99.4 83 59.0
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.3e-19 99.4 79 59.5
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.3e-19 99.4 82 59.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 3.0e-19 98.2 76 60.5
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.0e-19 98.2 77 64.9
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 3.0e-19 98.2 82 64.6
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 3.0e-19 98.2 78 64.1
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.9e-19 97.8 53 79.2
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 5.1e-19 97.4 81 64.2
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 6.6e-19 97.1 66 66.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 6.6e-19 97.1 66 66.7
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 6.6e-19 97.1 68 67.6
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 8.7e-19 96.7 57 73.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.1e-18 96.3 72 66.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 2.5e-18 95.1 82 58.5
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 4.3e-18 94.4 53 73.6
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.8e-16 89.0 52 71.2
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.4e-16 88.6 53 71.7
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-15 86.3 53 66.0
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 3.8e-14 81.3 64 62.5
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 2.4e-13 78.6 50 66.0
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.4e-13 78.6 78 47.4
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 3.2e-13 78.2 51 62.7
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 3.2e-13 78.2 70 51.4
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 5.4e-13 77.4 43 72.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 9.3e-13 76.6 72 54.2
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.6e-12 75.9 53 60.4
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.1e-12 75.5 50 64.0
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 4.6e-12 74.3 49 63.3
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 4.6e-12 74.3 67 50.7
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.6e-12 74.3 49 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.0e-11 71.6 79 44.3
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.9e-10 68.9 60 56.7
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 7.4e-10 67.0 60 58.3
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.6e-09 65.9 76 40.8
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.7e-09 64.7 61 57.4
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 1.4e-08 62.8 81 44.4
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 2.4e-08 62.0 75 42.7
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 5.3e-08 60.8 50 58.0


User provided reference genes

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