Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.2e-84 315.5 149 100.0
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.5e-67 258.8 127 94.5
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.2e-64 250.0 127 89.8
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.6e-64 248.8 119 95.0
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 3.4e-64 248.4 127 89.8
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 3.4e-64 248.4 127 89.8
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 9.8e-64 246.9 127 89.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.3e-63 246.5 127 86.6
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 6.3e-63 244.2 127 85.0
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 6.3e-63 244.2 127 87.4
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.4e-62 242.3 127 85.0
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 4.1e-62 241.5 127 83.5
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 7.0e-62 240.7 127 83.5
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.6e-61 239.6 127 83.5
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.0e-61 239.2 127 84.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 2.0e-61 239.2 127 85.0
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 3.5e-61 238.4 127 82.7
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 4.5e-61 238.0 120 86.7
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 7.8e-61 237.3 127 84.3
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 7.8e-61 237.3 127 84.3
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.3e-60 236.5 127 83.5
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.7e-60 236.1 127 84.3
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.7e-60 236.1 127 82.7
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 2.3e-60 235.7 127 82.7
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.9e-60 235.3 127 81.9
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.9e-60 235.3 127 84.3
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 3.8e-60 235.0 127 82.7
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 3.8e-60 235.0 127 82.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.0e-60 234.6 127 83.5
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 5.0e-60 234.6 127 83.5
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 6.6e-60 234.2 127 80.3
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 6.6e-60 234.2 127 83.5
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 8.6e-60 233.8 127 81.9
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.1e-59 233.4 127 81.1
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.5e-59 233.0 127 83.5
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.9e-59 232.6 127 82.7
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 2.5e-59 232.3 127 83.5
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.5e-59 232.3 127 81.1
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 2.5e-59 232.3 127 81.1
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 3.3e-59 231.9 127 78.7
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 3.3e-59 231.9 127 81.9
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 3.3e-59 231.9 127 81.1
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 4.3e-59 231.5 127 82.7
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.6e-59 231.1 127 81.1
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 7.3e-59 230.7 127 81.9
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 9.5e-59 230.3 120 84.2
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 9.5e-59 230.3 127 80.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.2e-58 229.9 127 80.3
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 1.6e-58 229.6 127 80.3
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 2.1e-58 229.2 127 81.1
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 2.8e-58 228.8 127 80.3
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 3.6e-58 228.4 127 80.3
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 3.6e-58 228.4 127 80.3
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 3.6e-58 228.4 127 81.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 3.6e-58 228.4 127 79.5
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 3.6e-58 228.4 127 80.3
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 3.6e-58 228.4 127 80.3
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 4.7e-58 228.0 127 80.3
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 4.7e-58 228.0 122 82.0
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 6.1e-58 227.6 127 79.5
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 8.0e-58 227.3 127 79.5
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.4e-57 226.5 127 79.5
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-57 226.5 127 78.7
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-57 226.5 127 78.7
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.4e-57 226.5 127 79.5
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.4e-57 226.5 127 79.5
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.8e-57 226.1 127 78.7
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 4.0e-57 224.9 127 78.7
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 4.0e-57 224.9 127 78.7
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 4.0e-57 224.9 126 79.4
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 5.2e-57 224.6 127 77.2
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 5.2e-57 224.6 127 78.7
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 8.9e-57 223.8 118 83.1
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 8.9e-57 223.8 160 68.1
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.2e-56 223.4 127 78.7
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 3.4e-56 221.9 156 68.6
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 4.4e-56 221.5 127 78.0
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 7.5e-56 220.7 128 78.9
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 9.8e-56 220.3 127 77.2
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 9.8e-56 220.3 127 77.2
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.3e-55 219.9 127 77.2
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.2e-55 219.2 127 78.0
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.2e-55 219.2 124 80.6
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 3.7e-55 218.4 119 80.7
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 3.7e-55 218.4 119 80.7
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 4.9e-55 218.0 119 80.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 4.9e-55 218.0 119 80.7
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.4e-55 217.6 127 76.4
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.6e-53 213.0 119 79.8
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.0e-52 210.3 126 73.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.7e-52 209.5 126 69.8
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.7e-52 209.5 127 74.0
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.5e-51 205.7 127 71.7
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 2.3e-49 199.1 145 68.3
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.2e-48 196.8 104 87.5
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.6e-48 195.7 104 84.6
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.6e-48 195.7 98 88.8
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.3e-47 193.4 126 68.3
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.2e-47 192.6 117 76.9
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 2.9e-47 192.2 117 74.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 4.9e-47 191.4 109 80.7
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.1e-46 190.3 129 69.0
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 4.1e-46 188.3 104 82.7
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 7.0e-46 187.6 104 83.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.3e-44 182.6 97 83.5
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 6.6e-44 181.0 104 77.9
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 3.6e-42 175.3 98 80.6
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.1e-41 173.7 115 72.2
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 8.9e-41 170.6 90 87.8
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.4e-38 162.5 91 81.3
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 4.1e-38 161.8 90 83.3
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 2.4e-33 146.0 71 83.1
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.6e-32 142.5 114 59.6
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 9.9e-32 140.6 130 52.3
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 6.4e-31 137.9 126 54.8
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.2e-29 133.7 111 58.6
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.3e-28 129.4 112 50.9
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 5.1e-28 128.3 72 76.4
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 6.6e-28 127.9 72 81.9
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.5e-27 126.7 72 81.9
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 4.3e-27 125.2 57 91.2
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.2e-26 123.6 72 80.6
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.1e-26 122.9 111 53.2
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 9.0e-25 117.5 58 84.5
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 7.6e-24 114.4 95 55.8
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 6.0e-21 104.8 52 84.6
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.6e-19 98.2 71 62.0
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.6e-19 97.4 48 85.4
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.8e-17 93.2 60 71.7
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.8e-17 93.2 60 71.7
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.0e-12 77.4 37 83.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.8e-10 69.3 146 30.1
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.1e-09 67.4 31 90.3
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 2.4e-09 66.2 94 38.3
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 4.5e-08 62.0 135 28.1
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 1.4e-06 57.0 60 48.3


User provided reference genes

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