Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.6e-194 681.8 328 100.0
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 8.5e-169 597.0 328 88.7
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.5e-120 436.0 334 66.8
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.6e-119 433.3 334 66.8
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.1e-110 404.1 334 63.2
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 4.6e-106 388.7 335 59.7
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.5e-104 383.6 335 59.1
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.5e-101 373.6 336 59.8
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 3.4e-101 372.5 317 61.8
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.3e-99 364.4 339 56.3
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.1e-98 363.2 313 60.1
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 4.6e-98 362.1 261 65.9
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.1e-96 357.5 335 55.2
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 2.5e-96 356.3 335 54.9
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 7.3e-96 354.8 323 58.2
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 3.6e-95 352.4 341 56.0
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.0e-94 349.0 333 56.2
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 1.2e-93 347.4 335 54.6
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.4e-93 345.9 336 56.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.8e-93 345.1 351 53.6
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 9.9e-93 344.4 335 54.9
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.3e-92 344.0 337 54.6
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.2e-92 343.2 337 54.3
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 3.8e-92 342.4 338 54.1
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 3.8e-92 342.4 333 55.6
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.9e-92 342.0 336 54.5
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 6.4e-92 341.7 336 53.9
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.9e-91 340.1 338 54.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 2.4e-91 339.7 333 55.3
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 7.1e-91 338.2 329 55.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.2e-90 337.4 337 55.5
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.6e-90 337.0 358 50.3
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.1e-90 336.7 342 53.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.7e-90 336.3 338 53.8
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.7e-90 336.3 338 53.8
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 6.0e-90 335.1 339 51.6
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 7.9e-90 334.7 333 54.4
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 7.9e-90 334.7 344 54.9
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.0e-89 334.3 336 54.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.3e-89 334.0 335 51.9
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 3.9e-89 332.4 336 53.6
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.9e-89 332.4 338 52.7
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 8.7e-89 331.3 336 52.7
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.5e-88 330.5 265 64.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.5e-88 329.7 341 53.1
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 7.4e-88 328.2 332 53.6
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 9.6e-88 327.8 328 53.7
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.3e-87 327.4 335 54.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 2.1e-87 326.6 337 52.2
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.8e-87 326.2 346 52.9
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 8.1e-87 324.7 337 53.7
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.4e-86 323.9 339 52.2
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.8e-86 323.6 335 54.3
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.2e-85 320.9 267 60.3
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.2e-85 320.9 337 53.1
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 3.4e-85 319.3 262 63.0
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.4e-85 319.3 331 53.5
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.7e-84 317.0 254 61.4
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 3.8e-84 315.8 331 50.2
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 4.2e-83 312.4 328 51.2
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 7.1e-83 311.6 263 60.1
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 7.1e-83 311.6 262 61.1
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 9.3e-83 311.2 335 52.8
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 4.6e-82 308.9 263 58.9
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 7.9e-82 308.1 325 50.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.0e-81 307.8 305 53.4
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.8e-81 307.0 263 58.6
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 2.3e-81 306.6 340 50.0
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 3.0e-81 306.2 338 50.6
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.7e-81 305.1 334 49.4
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.1e-80 304.3 338 50.6
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 4.3e-80 302.4 265 58.5
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 5.6e-80 302.0 330 49.4
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 9.6e-80 301.2 328 49.7
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.6e-79 300.4 402 44.0
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.1e-79 300.1 329 50.8
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.8e-79 299.7 330 50.3
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.8e-79 298.9 265 58.5
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 6.2e-79 298.5 328 48.8
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 8.1e-79 298.1 330 50.0
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.4e-78 297.4 330 48.8
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 1.4e-78 297.4 261 57.1
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.4e-78 296.6 346 49.7
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 2.0e-77 293.5 254 59.1
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 2.6e-77 293.1 329 48.0
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.6e-77 293.1 236 61.0
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.5e-77 292.4 404 42.1
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.8e-77 292.0 334 48.2
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.0e-76 291.2 266 56.0
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.3e-76 290.8 341 46.9
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.7e-76 290.4 336 45.8
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.2e-76 290.0 329 49.2
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.9e-76 289.7 255 54.9
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 5.5e-75 285.4 328 48.2
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.6e-74 283.9 329 48.0
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 4.6e-74 282.3 336 48.2
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 7.9e-74 281.6 332 48.2
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.0e-73 281.2 302 50.3
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.0e-73 281.2 250 57.6
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 8.7e-73 278.1 328 46.3
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 3.3e-72 276.2 328 45.4
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.1e-71 273.5 333 46.2
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.7e-71 272.7 332 45.5
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.1e-70 271.2 296 48.3
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.4e-70 270.8 263 56.3
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.1e-70 269.6 266 52.3
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.5e-69 267.3 263 55.5
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 8.5e-68 261.5 322 44.7
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.1e-67 261.2 294 48.6
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.1e-67 261.2 328 45.4
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 1.4e-67 260.8 228 61.4
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 5.5e-67 258.8 293 47.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 7.9e-66 255.0 294 47.3
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.3e-65 253.4 226 54.9
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 6.7e-65 251.9 226 54.9
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 6.7e-65 251.9 334 43.4
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.9e-64 250.4 328 43.0
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.9e-64 250.4 214 57.0
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 2.5e-64 250.0 223 55.2
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.6e-63 247.3 225 55.1
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.2e-63 246.9 239 51.9
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 3.7e-63 246.1 335 43.3
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 3.7e-63 246.1 328 43.6
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 3.7e-63 246.1 328 43.0
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 4.8e-63 245.7 222 55.4
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.1e-62 243.0 222 55.0
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 6.5e-60 235.3 259 49.4
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-59 233.8 236 51.3
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.9e-59 233.8 270 45.2
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.6e-56 223.4 145 68.3
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 5.7e-56 222.2 318 40.9
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 7.4e-56 221.9 269 46.1
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 1.7e-55 220.7 268 44.0
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 3.7e-55 219.5 236 52.1
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.3e-55 218.8 250 48.8
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.1e-54 216.1 250 47.6
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.0e-49 201.4 240 46.7
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.0e-48 197.2 295 41.0
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 8.2e-47 191.8 238 47.9
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 3.5e-45 186.4 328 33.2
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 4.5e-45 186.0 263 39.9
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.5e-43 181.0 258 40.3
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.9e-43 180.6 328 37.5
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 4.2e-43 179.5 261 41.4
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 5.5e-43 179.1 267 40.1
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 7.2e-43 178.7 261 41.4
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 9.4e-43 178.3 267 38.2
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 8.0e-42 175.3 266 39.1
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.0e-41 173.3 335 36.4
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.5e-40 171.0 268 37.3
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.5e-40 171.0 265 38.9
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 5.7e-40 169.1 272 36.8
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 7.5e-40 168.7 268 35.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 9.7e-40 168.3 257 38.1
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 2.4e-38 163.7 258 37.2
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.9e-37 159.1 275 34.2
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.8e-33 147.5 255 36.9
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 4.0e-33 146.4 216 36.6
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 9.1e-30 135.2 266 32.0
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 5.9e-29 132.5 262 35.5
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.5e-27 127.1 270 35.2
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.7e-15 86.7 88 51.1
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.8e-14 84.3 98 50.0
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.2e-14 83.6 131 41.2
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 4.7e-10 69.7 52 59.6
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 4.9e-07 59.7 134 37.3
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 2.4e-06 57.4 31 83.9
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 4.1e-06 56.6 29 89.7
SMO203G0166 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 9.2e-06 55.5 64 39.1


User provided reference genes

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