Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 0.0e+00 1317.4 823 100.0
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 0.0e+00 1255.4 823 94.3
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 0.0e+00 1179.5 823 89.7
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 0.0e+00 1147.9 824 79.6
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 0.0e+00 1139.4 824 81.3
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 0.0e+00 1118.6 824 75.6
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 6.1e-309 1063.9 787 83.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 6.2e-285 984.2 824 70.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.4e-281 973.0 862 67.9
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.2e-280 969.9 817 68.7
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 3.0e-279 965.3 813 64.8
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.4e-276 956.4 813 71.0
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 9.0e-276 953.7 816 67.0
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 9.0e-276 953.7 813 64.8
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.5e-275 953.0 846 69.0
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 4.4e-275 951.4 812 70.2
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.4e-273 946.4 826 66.7
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.2e-273 944.9 812 70.0
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.1e-272 942.6 812 66.9
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 5.6e-270 934.5 809 66.4
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 7.3e-270 934.1 828 68.1
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 1.5e-267 926.4 842 65.4
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 2.0e-267 926.0 818 67.0
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 1.4e-265 919.8 834 61.2
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 1.9e-265 919.5 818 66.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 4.2e-265 918.3 825 67.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 7.1e-265 917.5 840 65.0
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 7.1e-265 917.5 822 72.9
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.2e-264 916.8 818 66.9
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 1.5e-262 909.8 809 62.8
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 5.6e-262 907.9 822 65.8
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.3e-261 906.7 836 66.7
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 1.6e-261 906.4 820 66.5
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 3.7e-261 905.2 829 63.7
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.4e-260 903.3 813 65.2
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 6.9e-260 901.0 831 63.3
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.9e-258 895.6 814 67.7
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 8.4e-258 894.0 815 66.3
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 7.1e-257 891.0 837 64.0
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 2.7e-256 889.0 832 62.9
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.7e-256 889.0 805 65.1
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.0e-255 885.6 833 64.1
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 3.9e-255 885.2 843 69.4
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 1.1e-254 883.6 851 61.0
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.9e-254 882.9 820 63.7
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.3e-254 881.7 824 66.0
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 2.8e-253 879.0 817 66.3
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 6.2e-253 877.9 823 60.8
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 2.0e-251 872.8 821 65.2
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 5.0e-250 868.2 817 65.2
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 7.2e-249 864.4 816 59.4
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.6e-248 863.2 828 63.8
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.7e-248 862.4 824 68.1
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 3.5e-248 862.1 832 60.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 4.6e-248 861.7 830 63.1
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.0e-247 860.5 823 66.1
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 8.7e-247 857.4 848 61.6
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.5e-246 856.7 825 59.3
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 5.3e-244 848.2 789 62.9
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 5.9e-243 844.7 832 59.3
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 7.7e-243 844.3 851 56.8
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.7e-242 843.2 824 63.2
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.9e-241 839.7 814 60.0
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 3.2e-241 839.0 831 60.0
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 7.2e-241 837.8 835 60.7
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 3.3e-238 828.9 834 58.2
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 3.7e-237 825.5 844 56.6
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.7e-237 825.5 821 64.1
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.0e-234 817.4 826 58.0
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-234 817.0 834 57.8
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.2e-234 816.2 834 58.4
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 2.2e-234 816.2 819 61.2
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 6.5e-234 814.7 826 59.0
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.9e-233 813.1 832 59.3
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 3.2e-233 812.4 834 57.1
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.5e-233 811.6 805 57.4
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 7.2e-233 811.2 831 57.9
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 1.8e-231 806.6 816 62.3
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 1.5e-230 803.5 828 57.2
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.1e-228 797.3 836 56.1
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 2.4e-228 796.2 776 59.7
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 8.8e-223 777.7 851 53.7
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-218 763.8 886 56.3
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 2.2e-218 763.1 697 68.1
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 8.5e-218 761.1 784 57.3
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 8.3e-213 744.6 825 56.8
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-211 740.3 822 52.7
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 7.7e-211 738.0 823 58.6
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 2.7e-208 729.6 823 59.1
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 4.0e-207 725.7 823 59.2
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 2.0e-206 723.4 823 59.1
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 4.4e-206 722.2 821 55.9
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.5e-203 712.6 802 53.9
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 4.3e-201 705.7 653 65.4
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.4e-199 700.7 828 55.1
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.0e-198 696.8 826 55.9
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.4e-196 690.6 822 53.8
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.0e-195 686.8 825 53.5
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 4.9e-189 665.6 815 49.0
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.9e-188 663.7 815 48.7
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 9.2e-188 661.4 911 50.9
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 3.5e-187 659.4 825 52.2
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.6e-187 659.1 825 48.0
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.3e-186 656.8 863 47.9
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 6.6e-186 655.2 815 48.2
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 6.6e-186 655.2 829 50.1
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.1e-185 654.4 833 52.2
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 3.3e-177 626.3 825 52.4
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 1.1e-169 601.3 825 47.4
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.9e-169 600.5 439 69.0
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 1.4e-164 584.3 633 67.0
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.9e-162 576.2 772 48.4
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 3.4e-158 563.1 583 66.2
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.6e-150 537.0 700 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 4.3e-145 519.6 738 47.8
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.1e-144 517.3 745 48.9
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.7e-144 516.5 472 62.3
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.4e-135 488.0 881 47.0
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 6.5e-133 479.2 566 61.5
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 3.6e-123 446.8 350 67.1
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.5e-121 441.4 319 69.6
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.4e-121 439.9 479 67.2
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.2e-120 437.6 848 40.0
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 4.1e-119 433.3 542 51.8
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.7e-117 427.9 540 58.0
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 3.6e-107 393.7 432 65.3
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 3.1e-103 380.6 456 47.4
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-101 375.2 277 68.2
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 6.5e-101 372.9 535 43.2
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 7.5e-97 359.4 817 40.5
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 7.7e-94 349.4 532 40.4
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 2.8e-88 330.9 890 37.1
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.7e-86 324.3 523 41.5
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 1.5e-84 318.5 800 34.0
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 2.5e-84 317.8 446 45.7
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.2e-64 251.5 505 35.0
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 9.9e-57 226.1 198 63.6
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 6.0e-54 216.9 403 59.3
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 5.6e-52 210.3 360 50.8
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.0e-45 189.5 139 66.9
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 2.1e-43 181.8 180 61.7
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.1e-37 160.6 415 33.3
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 3.4e-33 147.9 137 56.9
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.7e-30 138.3 138 56.5
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-28 132.9 337 33.8
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-28 131.7 310 35.5
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 1.5e-25 122.5 143 52.4
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-23 114.8 77 72.7
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 4.2e-23 114.4 94 57.4
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 3.5e-22 111.3 95 57.9
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-22 111.3 130 51.5
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 5.1e-21 107.5 220 37.7
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.5e-20 105.9 102 58.8
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.4e-20 103.6 77 67.5
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.1e-18 98.2 84 56.0
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 6.9e-18 97.1 80 58.8
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-15 89.4 79 62.0
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 1.2e-14 86.3 136 43.4
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.1e-14 84.0 153 43.8
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-13 82.8 75 61.3
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-13 82.0 104 48.1
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-13 81.6 358 29.1
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 8.7e-13 80.1 71 64.8
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.3e-12 78.2 84 50.0
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.3e-12 78.2 72 52.8
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.2e-11 75.5 607 20.6
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 3.1e-10 71.6 142 40.8
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.9e-10 70.5 160 37.5
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.1e-10 70.1 80 47.5
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 1.5e-09 69.3 66 53.0
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 2.6e-09 68.6 65 55.4
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.3e-08 66.2 89 50.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-08 66.2 269 26.8
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.7e-08 65.9 65 50.8
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 2.2e-08 65.5 41 70.7
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 2.9e-08 65.1 51 74.5
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.9e-07 62.4 57 56.1
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-07 61.2 89 47.2
HPP92_028511 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.1e-06 58.9 40 65.0
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 2.7e-06 58.5 45 57.8
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-06 58.5 112 38.4


User provided reference genes

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