Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-275 952.6 486 100.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.6e-251 871.7 463 97.2
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.0e-243 845.5 537 84.0
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.3e-205 719.9 464 78.2
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 7.1e-204 714.1 465 77.8
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.1e-201 706.8 464 77.6
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 8.1e-200 700.7 464 76.9
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 4.1e-196 688.3 467 75.2
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 3.3e-185 652.1 461 72.5
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.4e-183 646.0 461 71.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 5.5e-164 581.6 462 66.7
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.9e-140 503.4 286 89.5
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.3e-128 464.2 476 54.2
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.2e-125 453.4 470 53.8
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.5e-124 450.7 475 53.7
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.6e-121 439.9 477 53.5
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 5.7e-121 438.7 477 53.2
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.1e-116 424.5 470 51.5
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 9.5e-116 421.4 480 50.8
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.6e-115 420.6 479 51.4
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 6.8e-114 415.2 483 49.5
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 2.7e-110 403.3 472 49.4
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 4.4e-105 386.0 477 45.5
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.6e-102 377.5 480 47.7
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.6e-102 377.5 478 47.3
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 3.5e-102 376.3 479 48.0
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.5e-100 370.2 487 46.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 7.3e-100 368.6 475 46.7
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.6e-99 366.3 477 46.1
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.6e-99 366.3 474 45.8
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.8e-98 364.0 478 46.2
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 2.6e-97 360.1 475 45.7
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-95 354.8 477 45.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.2e-94 351.3 478 45.6
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 3.0e-93 346.7 471 43.5
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.5e-92 343.6 470 44.7
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 4.3e-92 342.8 477 43.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 4.3e-92 342.8 479 44.1
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 7.3e-92 342.0 500 42.2
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.5e-92 341.7 478 43.1
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 9.5e-92 341.7 478 43.1
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.2e-90 335.9 478 42.5
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.9e-90 335.1 478 42.9
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.5e-89 334.3 478 43.7
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.3e-88 331.3 472 41.9
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.9e-88 330.1 350 52.9
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.4e-87 327.8 485 44.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.9e-87 327.4 480 42.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 3.2e-87 326.6 480 40.6
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 9.2e-87 325.1 489 42.5
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.3e-85 321.2 460 42.2
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 8.6e-85 318.5 490 40.8
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.5e-84 317.8 484 41.7
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.9e-84 317.4 469 42.4
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.5e-84 317.0 202 75.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 5.6e-84 315.8 477 42.6
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.6e-83 314.3 484 42.8
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.6e-83 314.3 484 42.4
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.6e-83 313.2 463 41.5
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 3.6e-83 313.2 468 43.8
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-82 310.8 471 41.6
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 5.2e-82 309.3 485 41.2
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 6.8e-82 308.9 483 39.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 8.9e-82 308.5 490 41.2
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.5e-81 307.8 497 40.2
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.7e-80 304.3 482 40.7
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 2.2e-80 303.9 477 41.3
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.4e-79 300.4 484 41.5
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 9.2e-79 298.5 464 41.4
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 4.6e-78 296.2 475 40.4
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.0e-77 295.0 481 40.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.0e-77 295.0 486 39.9
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.3e-77 294.7 481 40.7
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-77 294.3 488 40.0
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-77 293.9 482 40.2
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.0e-77 293.5 448 41.5
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.9e-77 293.1 483 40.4
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 3.9e-77 293.1 477 40.3
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 8.7e-77 292.0 481 39.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.1e-76 291.6 483 40.4
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.5e-76 290.4 493 39.8
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.3e-76 290.0 467 37.9
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 5.6e-76 289.3 488 40.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 9.6e-76 288.5 488 40.0
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 9.6e-76 288.5 440 42.7
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.6e-75 287.7 484 39.9
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 4.7e-75 286.2 468 42.7
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.8e-74 284.3 478 39.1
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.1e-74 283.5 482 39.0
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.1e-71 275.0 347 47.0
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.5e-70 270.0 371 45.3
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 4.6e-70 269.6 476 39.5
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.0e-69 266.9 453 39.7
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.9e-69 266.5 483 39.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 5.6e-68 262.7 428 39.0
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.3e-67 261.5 497 37.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.1e-67 260.8 351 43.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.8e-67 260.4 481 37.4
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.5e-65 254.6 405 39.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.8e-61 241.1 490 35.3
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.9e-61 240.0 490 35.5
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-53 215.3 485 34.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 8.2e-51 205.7 348 39.9
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.0e-49 201.1 494 33.4
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.5e-48 196.1 461 34.3
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-47 195.3 358 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.1e-46 191.0 543 29.7
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.0e-46 189.5 276 42.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 6.7e-45 186.0 372 37.1
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 3.3e-44 183.7 465 32.0
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.1e-42 177.2 537 30.4
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.3e-42 176.4 309 38.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 4.5e-41 173.3 283 38.9
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 7.6e-41 172.6 503 29.8
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 7.2e-39 166.0 544 30.5
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.0e-37 160.6 376 30.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 5.1e-37 159.8 552 29.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 7.4e-36 156.0 560 29.3
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 7.4e-36 156.0 560 29.3
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.7e-35 154.8 212 40.6
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 3.7e-35 153.7 329 37.1
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.1e-34 152.1 440 32.7
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-34 152.1 282 35.8
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.1e-34 150.6 303 34.7
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.3e-34 149.8 220 44.1
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.5e-33 148.3 273 37.4
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-32 144.4 277 35.4
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.1e-30 136.3 351 32.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.8e-29 134.8 223 41.3
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.6e-25 120.9 329 31.9
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 3.2e-23 114.0 338 30.5
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 7.2e-23 112.8 126 49.2
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.2e-15 87.4 148 40.5
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 9.4e-15 85.9 136 37.5
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 6.1e-14 83.2 109 42.2
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 8.0e-14 82.8 102 47.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 9.7e-12 75.9 88 54.5
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-11 75.1 121 39.7
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.1e-10 70.5 83 47.0
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 4.5e-09 67.0 123 37.4
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 5.9e-09 66.6 119 37.8
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-08 65.5 147 35.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 3.8e-08 63.9 115 36.5
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.9e-07 61.6 75 41.3
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 4.2e-07 60.5 105 41.9
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 3.6e-06 57.4 120 33.3


User provided reference genes

Program Settings