Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.3e-119 433.3 256 100.0
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 3.6e-98 362.1 251 77.7
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 4.7e-98 361.7 251 77.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.7e-92 343.2 252 75.4
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 3.6e-90 335.5 240 77.5
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 3.2e-62 242.7 177 74.0
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 7.1e-46 188.3 172 73.3
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 5.5e-30 135.6 211 41.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.3e-30 134.8 192 42.2
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.2e-29 134.4 259 37.5
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-29 134.0 211 41.7
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.5e-29 132.9 229 38.9
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 4.6e-29 132.5 234 38.5
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 7.9e-29 131.7 211 41.2
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 7.9e-29 131.7 212 41.5
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.8e-28 130.6 253 40.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 3.9e-28 129.4 212 38.7
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 3.9e-28 129.4 212 38.7
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 5.1e-28 129.0 229 39.7
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 8.7e-28 128.3 193 40.9
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 8.7e-28 128.3 261 37.2
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.5e-27 127.5 216 39.4
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.9e-27 127.1 250 36.0
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 3.3e-27 126.3 206 38.3
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 3.3e-27 126.3 250 36.0
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.3e-26 124.4 241 40.2
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.1e-26 123.6 216 38.9
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 2.8e-26 123.2 214 40.2
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 8.2e-26 121.7 236 34.7
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.1e-25 121.3 213 38.5
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.8e-25 120.6 211 39.8
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 3.1e-25 119.8 269 35.7
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 4.0e-25 119.4 257 36.6
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 6.9e-25 118.6 258 34.9
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 9.0e-25 118.2 211 38.9
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 9.0e-25 118.2 193 38.3
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.2e-24 117.9 252 36.5
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.5e-24 117.5 260 36.2
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.4e-24 116.3 256 34.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 3.4e-24 116.3 260 35.4
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 4.5e-24 115.9 261 34.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.5e-24 115.9 261 34.9
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 2.2e-23 113.6 261 34.5
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 4.9e-23 112.5 260 34.6
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 4.9e-23 112.5 223 36.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 6.5e-23 112.1 211 38.4
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 6.5e-23 112.1 223 36.3
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 8.4e-23 111.7 256 33.6
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 8.4e-23 111.7 192 37.5
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.1e-22 111.3 259 32.8
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.4e-22 110.9 258 32.2
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.4e-22 110.9 208 38.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.4e-22 110.9 187 38.0
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.4e-22 110.9 255 34.1
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-22 110.9 216 36.6
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.9e-22 110.5 258 32.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 2.5e-22 110.2 261 33.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 3.2e-22 109.8 257 32.7
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 3.2e-22 109.8 221 35.7
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.2e-22 109.8 187 36.9
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.2e-22 109.8 266 33.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.2e-22 109.8 255 34.5
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 4.2e-22 109.4 257 32.7
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 4.2e-22 109.4 257 32.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 4.2e-22 109.4 219 36.5
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.2e-22 109.4 208 35.1
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 5.5e-22 109.0 259 32.4
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 5.5e-22 109.0 255 32.5
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 7.1e-22 108.6 221 36.2
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 7.1e-22 108.6 238 33.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.1e-22 108.6 255 32.2
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.1e-22 108.6 211 37.9
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.1e-22 108.6 211 37.9
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 9.3e-22 108.2 187 36.9
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.2e-21 107.8 253 34.4
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.6e-21 107.5 257 32.3
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.6e-21 107.5 257 32.3
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 2.1e-21 107.1 210 36.2
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.1e-21 107.1 192 37.5
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.1e-21 107.1 207 35.7
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 2.7e-21 106.7 212 36.8
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.7e-21 106.7 207 36.2
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 2.7e-21 106.7 259 33.6
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 2.7e-21 106.7 259 33.6
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 2.7e-21 106.7 213 34.7
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.5e-21 106.3 248 34.3
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 3.5e-21 106.3 238 34.0
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 4.6e-21 105.9 210 36.2
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 4.6e-21 105.9 208 37.5
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 6.0e-21 105.5 259 32.4
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 7.9e-21 105.1 187 36.9
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.0e-20 104.8 232 35.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.8e-20 104.0 251 33.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.3e-20 103.6 187 36.4
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 3.0e-20 103.2 239 32.6
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.9e-20 102.8 221 37.1
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.9e-20 102.8 250 32.4
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.9e-20 102.8 248 33.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.1e-20 102.4 172 37.2
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 8.7e-20 101.7 260 32.3
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 8.7e-20 101.7 192 35.4
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.1e-19 101.3 211 34.1
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.1e-19 101.3 248 33.5
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.1e-19 101.3 193 37.3
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.1e-19 101.3 198 35.9
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.5e-19 100.9 258 33.3
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.3e-18 97.8 278 30.6
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.6e-18 97.4 258 32.9
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.8e-18 96.7 251 32.7
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 8.2e-18 95.1 260 35.0
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 8.2e-18 95.1 205 35.1
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.8e-17 94.0 166 37.3
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 2.4e-17 93.6 172 39.0
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.3e-15 87.8 165 33.9
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.2e-15 87.0 245 31.0
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.6e-13 79.3 104 45.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.9e-12 76.3 107 41.1
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.3e-10 71.2 171 30.4
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 6.9e-09 65.5 82 47.6
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.0e-08 63.9 139 33.1
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 7.7e-08 62.0 227 26.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 7.7e-08 62.0 69 43.5
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.7e-08 62.0 89 43.8
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.0e-07 59.3 151 29.1
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.5e-06 57.0 163 28.2
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.2e-06 56.6 187 27.3
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.2e-06 56.6 116 31.0
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 3.2e-06 56.6 81 44.4
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.2e-06 56.2 144 28.5
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 5.5e-06 55.8 106 35.8
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 5.5e-06 55.8 70 42.9
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 7.2e-06 55.5 105 33.3


User provided reference genes

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