Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001264g0230 Nicotiana tabacum HOM05D001755 ORTHO05D001665 4.3e-59 231.1 114 100.0
CSS0016051 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 9.6e-19 97.1 98 57.1
Nitab4.5_0002650g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.4e-17 93.2 72 73.6
Sabra05G0120800 Salix brachista HOM05D001755 ORTHO05D001665 4.0e-17 91.7 103 52.4
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 3.4e-16 88.6 97 51.5
Solyc12g087895.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 3.4e-16 88.6 97 52.6
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 4.5e-16 88.2 102 50.0
ClCG10G009540 Citrullus lanatus HOM05D001755 ORTHO05D001665 9.9e-16 87.0 95 52.6
CsaV3_7G007020 Cucumis sativus L. HOM05D001755 ORTHO05D001665 9.9e-16 87.0 95 52.6
Dinv15987 Davidia involucrata HOM05D001755 ORTHO05D001665 1.3e-15 86.7 105 49.5
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.7e-15 86.3 58 70.7
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.7e-15 86.3 95 51.6
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.7e-15 86.3 95 51.6
vmacro04680 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 1.7e-15 86.3 98 52.0
SGA_v2.0_scaffold219G42570 Striga asiatica HOM05D001755 ORTHO05D001665 2.2e-15 85.9 96 52.1
vmacro21312 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 2.2e-15 85.9 94 53.2
Sed0014860 Sechium edule HOM05D001755 ORTHO05D001665 3.8e-15 85.1 92 53.3
Duzib132G0573 Durio zibethinus HOM05D001755 ORTHO05D001665 4.9e-15 84.7 104 48.1
Migut.B00565 Erythranthe guttata HOM05D001755 ORTHO05D001665 1.1e-14 83.6 92 51.1
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 1.4e-14 83.2 91 51.6
Rhsim06G0074100 Rhododendron simsii HOM05D001755 ORTHO05D001665 1.4e-14 83.2 63 65.1
TAR628G0605 Trochodendron aralioides HOM05D001755 ORTHO05D001665 1.4e-14 83.2 68 63.2
CSS0010978 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.9e-14 82.8 91 51.6
CSS0046975 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.9e-14 82.8 91 51.6
TPR.G18441 Trifolium pratense HOM05D001755 ORTHO05D001665 1.9e-14 82.8 95 51.6
arahy.Tifrunner.gnm1.ann1.KCV3PX Arachis hypogaea HOM05D001755 ORTHO05D001665 2.4e-14 82.4 96 52.1
CiPaw.06G156900 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.4e-14 82.4 92 52.2
MD15G1381800 Malus domestica HOM05D001755 ORTHO05D001665 2.4e-14 82.4 92 52.2
ClCG09G015900 Citrullus lanatus HOM05D001755 ORTHO05D001665 3.2e-14 82.0 92 51.1
Dinv24160 Davidia involucrata HOM05D001755 ORTHO05D001665 3.2e-14 82.0 91 51.6
SEGI_04003 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 3.2e-14 82.0 91 51.6
Gohir.A05G265200 Gossypium hirsutum HOM05D001755 ORTHO05D001665 4.2e-14 81.6 92 52.2
EL10Ac9g22086 Beta vulgaris HOM05D001755 ORTHO05D001665 5.4e-14 81.3 93 47.3
CAN.G523.28 Capsicum annuum HOM05D001755 ORTHO05D001665 5.4e-14 81.3 92 52.2
CiPaw.05G031100 Carya illinoinensis HOM05D001755 ORTHO05D001665 5.4e-14 81.3 92 51.1
Nn5g29940 Nelumbo nucifera HOM05D001755 ORTHO05D001665 5.4e-14 81.3 92 51.1
Oeu022087.1 Olea europaea HOM05D001755 ORTHO05D001665 5.4e-14 81.3 92 50.0
TAR381G0451 Trochodendron aralioides HOM05D001755 ORTHO05D001665 5.4e-14 81.3 92 51.1
arahy.Tifrunner.gnm1.ann1.IVYM6W Arachis hypogaea HOM05D001755 ORTHO05D001665 7.1e-14 80.9 98 49.0
CAN.G1658.7 Capsicum annuum HOM05D001755 ORTHO05D001665 7.1e-14 80.9 92 51.1
Glyma.06G094800 Glycine max HOM05D001755 ORTHO05D001665 7.1e-14 80.9 92 48.9
MBI02_g18287_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 7.1e-14 80.9 91 50.5
MD08G1193000 Malus domestica HOM05D001755 ORTHO05D001665 7.1e-14 80.9 92 51.1
Prupe.1G527700 Prunus persica HOM05D001755 ORTHO05D001665 7.1e-14 80.9 92 51.1
CiPaw.07G168100 Carya illinoinensis HOM05D001755 ORTHO05D001665 9.3e-14 80.5 92 50.0
CiPaw.08G054200 Carya illinoinensis HOM05D001755 ORTHO05D001665 9.3e-14 80.5 92 50.0
ClCG00G003730 Citrullus lanatus HOM05D001755 ORTHO05D001665 9.3e-14 80.5 92 51.1
ClCG08G011500 Citrullus lanatus HOM05D001755 ORTHO05D001665 9.3e-14 80.5 92 51.1
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 9.3e-14 80.5 71 52.1
Rhsim05G0102500 Rhododendron simsii HOM05D001755 ORTHO05D001665 9.3e-14 80.5 91 50.5
Solyc04g076033.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 9.3e-14 80.5 91 50.5
Aa31sc34G40 Aethionema arabicum HOM05D001755 ORTHO05D001665 1.2e-13 80.1 45 80.0
Glyma.08G069600 Glycine max HOM05D001755 ORTHO05D001665 1.2e-13 80.1 92 53.3
Solyc01g105700.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.2e-13 80.1 92 51.1
Dinv44836 Davidia involucrata HOM05D001755 ORTHO05D001665 1.6e-13 79.7 91 49.5
Gohir.A03G175950 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.6e-13 79.7 92 50.0
Gohir.D02G199750 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.6e-13 79.7 92 50.0
Gorai.005G224400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.6e-13 79.7 92 50.0
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 2.1e-13 79.3 91 49.5
FAN08G0378 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.1e-13 79.3 96 50.0
Gohir.D05G267450 Gossypium hirsutum HOM05D001755 ORTHO05D001665 2.1e-13 79.3 92 51.1
Psat2g065840 Pisum sativum HOM05D001755 ORTHO05D001665 2.1e-13 79.3 92 50.0
Gorai.010G035900 Gossypium raimondii HOM05D001755 ORTHO05D001665 2.7e-13 79.0 91 50.5
Phvul.002G211300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 2.7e-13 79.0 92 52.2
Sc26g0000250 Simmondsia chinensis HOM05D001755 ORTHO05D001665 2.7e-13 79.0 92 48.9
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 3.5e-13 78.6 94 48.9
MELO3C018591.2 Cucumis melo HOM05D001755 ORTHO05D001665 3.5e-13 78.6 41 85.4
Hma1.2p1_0010F.1_g007000 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 3.5e-13 78.6 93 46.2
MBI06_g42716_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 3.5e-13 78.6 55 67.3
Prupe.8G067700 Prunus persica HOM05D001755 ORTHO05D001665 3.5e-13 78.6 92 48.9
arahy.Tifrunner.gnm1.ann1.KFP2BM Arachis hypogaea HOM05D001755 ORTHO05D001665 4.6e-13 78.2 91 49.5
arahy.Tifrunner.gnm1.ann1.NI9N2T Arachis hypogaea HOM05D001755 ORTHO05D001665 4.6e-13 78.2 91 49.5
Glyma.04G093000 Glycine max HOM05D001755 ORTHO05D001665 4.6e-13 78.2 92 48.9
Gohir.A05G221300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 4.6e-13 78.2 91 50.5
Gohir.D05G224000 Gossypium hirsutum HOM05D001755 ORTHO05D001665 4.6e-13 78.2 91 50.5
Gorai.009G231400 Gossypium raimondii HOM05D001755 ORTHO05D001665 4.6e-13 78.2 91 50.5
Lalb_Chr04g0252981 Lupinus albus HOM05D001755 ORTHO05D001665 4.6e-13 78.2 92 47.8
Phvul.009G038300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 4.6e-13 78.2 92 48.9
Potri.002G103400 Populus trichocarpa HOM05D001755 ORTHO05D001665 4.6e-13 78.2 92 50.0
Potri.005G158000 Populus trichocarpa HOM05D001755 ORTHO05D001665 4.6e-13 78.2 92 50.0
Sed0003373 Sechium edule HOM05D001755 ORTHO05D001665 4.6e-13 78.2 92 50.0
SGA_v2.0_scaffold14G07146 Striga asiatica HOM05D001755 ORTHO05D001665 4.6e-13 78.2 91 49.5
Thecc.02G132000 Theobroma cacao HOM05D001755 ORTHO05D001665 4.6e-13 78.2 92 48.9
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 6.0e-13 77.8 41 85.4
arahy.Tifrunner.gnm1.ann1.ZL8253 Arachis hypogaea HOM05D001755 ORTHO05D001665 6.0e-13 77.8 91 50.5
Glyma.07G181100 Glycine max HOM05D001755 ORTHO05D001665 6.0e-13 77.8 92 52.2
MD04G1047500 Malus domestica HOM05D001755 ORTHO05D001665 6.0e-13 77.8 92 46.7
Potri.007G112900 Populus trichocarpa HOM05D001755 ORTHO05D001665 6.0e-13 77.8 92 48.9
Sed0017446 Sechium edule HOM05D001755 ORTHO05D001665 6.0e-13 77.8 92 51.1
vmacro19953 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 6.0e-13 77.8 41 85.4
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 7.9e-13 77.4 41 85.4
Manes.18G061200 Manihot esculenta HOM05D001755 ORTHO05D001665 7.9e-13 77.4 92 48.9
Oeu049223.1 Olea europaea HOM05D001755 ORTHO05D001665 7.9e-13 77.4 92 48.9
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 7.9e-13 77.4 47 76.6
Sabra07G0092200 Salix brachista HOM05D001755 ORTHO05D001665 7.9e-13 77.4 91 48.4
Actinidia33109 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.0e-12 77.0 41 85.4
ATR0022G040 Amborella trichopoda HOM05D001755 ORTHO05D001665 1.0e-12 77.0 92 48.9
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 1.0e-12 77.0 42 83.3
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 1.0e-12 77.0 42 81.0
LjContig00408g0004832 Lotus japonicus HOM05D001755 ORTHO05D001665 1.0e-12 77.0 92 50.0
Phvul.008G179600 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 1.0e-12 77.0 92 48.9
RcHm_v2.0_Chr7g0237501 Rosa chinensis HOM05D001755 ORTHO05D001665 1.0e-12 77.0 92 50.0
SGA_v2.0_scaffold145G36024 Striga asiatica HOM05D001755 ORTHO05D001665 1.0e-12 77.0 91 47.3
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 1.3e-12 76.6 42 85.7
Glyma.15G056700 Glycine max HOM05D001755 ORTHO05D001665 1.3e-12 76.6 92 48.9
HanXRQChr05g0163291 Helianthus annuus HOM05D001755 ORTHO05D001665 1.8e-12 76.3 92 47.8
HanXRQChr05g0163551 Helianthus annuus HOM05D001755 ORTHO05D001665 1.8e-12 76.3 92 47.8
Manes.02G146800 Manihot esculenta HOM05D001755 ORTHO05D001665 1.8e-12 76.3 92 48.9
Potri.017G047932 Populus trichocarpa HOM05D001755 ORTHO05D001665 1.8e-12 76.3 92 47.8
Sed0017055 Sechium edule HOM05D001755 ORTHO05D001665 1.8e-12 76.3 92 48.9
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 1.8e-12 76.3 91 48.4
VMungo1309G0268 Vigna mungo HOM05D001755 ORTHO05D001665 1.8e-12 76.3 42 81.0
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 2.3e-12 75.9 41 85.4
FAN13G1260 Fragaria x ananassa HOM05D001755 ORTHO05D001665 2.3e-12 75.9 46 78.3
Glyma.02G212300 Glycine max HOM05D001755 ORTHO05D001665 2.3e-12 75.9 92 47.8
Glyma.14G180100 Glycine max HOM05D001755 ORTHO05D001665 2.3e-12 75.9 92 47.8
Manes.07G036900 Manihot esculenta HOM05D001755 ORTHO05D001665 2.3e-12 75.9 92 48.9
Phvul.006G203500 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 2.3e-12 75.9 92 47.8
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 2.3e-12 75.9 91 47.3
Manes.10G102000 Manihot esculenta HOM05D001755 ORTHO05D001665 3.0e-12 75.5 92 47.8
arahy.Tifrunner.gnm1.ann1.0E4ZKW Arachis hypogaea HOM05D001755 ORTHO05D001665 5.1e-12 74.7 44 75.0
Aqoxy6G01463 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 6.7e-12 74.3 41 85.4
Ciclev10006528m.g Citrus clementina HOM05D001755 ORTHO05D001665 8.7e-12 73.9 92 45.7
Lalb_Chr11g0065111 Lupinus albus HOM05D001755 ORTHO05D001665 8.7e-12 73.9 92 46.7
VMungo0251G2544 Vigna mungo HOM05D001755 ORTHO05D001665 8.7e-12 73.9 42 81.0
VMungo0540G1031 Vigna mungo HOM05D001755 ORTHO05D001665 8.7e-12 73.9 41 80.5
Dinv42637 Davidia involucrata HOM05D001755 ORTHO05D001665 1.1e-11 73.6 41 80.5
Lj1g0001104 Lotus japonicus HOM05D001755 ORTHO05D001665 1.1e-11 73.6 92 45.7
Medtr5g065670 Medicago truncatula HOM05D001755 ORTHO05D001665 1.1e-11 73.6 91 47.3
Lj4g0016585 Lotus japonicus HOM05D001755 ORTHO05D001665 1.5e-11 73.2 92 46.7
Lalb_Chr08g0242371 Lupinus albus HOM05D001755 ORTHO05D001665 1.5e-11 73.2 92 45.7
Lalb_Chr05g0217661 Lupinus albus HOM05D001755 ORTHO05D001665 1.9e-11 72.8 92 48.9
arahy.Tifrunner.gnm1.ann1.FV0XI2 Arachis hypogaea HOM05D001755 ORTHO05D001665 3.3e-11 72.0 42 76.2
BcaC03g18258 Brassica carinata HOM05D001755 ORTHO05D001665 4.3e-11 71.6 92 45.7
Migut.L01932 Erythranthe guttata HOM05D001755 ORTHO05D001665 4.3e-11 71.6 92 46.7
BraA02t09253Z Brassica rapa HOM05D001755 ORTHO05D001665 5.6e-11 71.2 92 44.6
Lalb_Chr17g0344421 Lupinus albus HOM05D001755 ORTHO05D001665 5.6e-11 71.2 92 47.8
Ciclev10003720m.g Citrus clementina HOM05D001755 ORTHO05D001665 9.6e-11 70.5 41 78.0
Aa31LG1G17560 Aethionema arabicum HOM05D001755 ORTHO05D001665 1.3e-10 70.1 91 45.1
Thhalv10005432m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 2.1e-10 69.3 92 44.6
AUR62027851 Chenopodium quinoa HOM05D001755 ORTHO05D001665 2.8e-10 68.9 38 81.6
Carub.0008s2514 Capsella rubella HOM05D001755 ORTHO05D001665 4.8e-10 68.2 92 43.5
DCAR_029187 Daucus carota HOM05D001755 ORTHO05D001665 1.1e-09 67.0 92 44.6
FAN18G3889 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.1e-09 67.0 37 81.1
CARHR278280 Cardamine hirsuta HOM05D001755 ORTHO05D001665 1.4e-09 66.6 92 42.4
Aa31LG3G17530 Aethionema arabicum HOM05D001755 ORTHO05D001665 2.4e-09 65.9 65 50.8
BcaB07g29738 Brassica carinata HOM05D001755 ORTHO05D001665 3.1e-09 65.5 42 66.7
BcaC01g06905 Brassica carinata HOM05D001755 ORTHO05D001665 5.3e-09 64.7 41 68.3
C03p61950 Brassica napus HOM05D001755 ORTHO05D001665 5.3e-09 64.7 41 68.3
BolC3t18454H Brassica oleracea HOM05D001755 ORTHO05D001665 5.3e-09 64.7 41 68.3
Sabra17G0032400 Salix brachista HOM05D001755 ORTHO05D001665 5.3e-09 64.7 44 63.6
Carub.0006s0803 Capsella rubella HOM05D001755 ORTHO05D001665 6.9e-09 64.3 93 44.1
Carub.0008s0991 Capsella rubella HOM05D001755 ORTHO05D001665 6.9e-09 64.3 92 46.7
CARHR203920 Cardamine hirsuta HOM05D001755 ORTHO05D001665 6.9e-09 64.3 93 44.1
Oeu060039.1 Olea europaea HOM05D001755 ORTHO05D001665 9.0e-09 63.9 90 44.4
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 1.2e-08 63.5 91 41.8
Thhalv10015558m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 2.6e-08 62.4 93 43.0
unitig_62.g23628 Utricularia gibba HOM05D001755 ORTHO05D001665 4.5e-08 61.6 42 64.3
unitig_699.g19865 Utricularia gibba HOM05D001755 ORTHO05D001665 6.4e-07 57.8 46 56.5
CDE10G0731 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 8.4e-07 57.4 41 61.0
BraA10t44831Z Brassica rapa HOM05D001755 ORTHO05D001665 1.9e-06 56.2 92 38.0


User provided reference genes

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