Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 8.1e-76 287.0 141 100.0
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.3e-53 211.5 141 78.7
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.8e-51 206.1 141 77.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.2e-49 199.1 141 75.2
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.4e-48 196.4 141 75.2
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 3.2e-48 195.3 141 74.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 5.1e-46 188.0 141 70.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.3e-43 177.9 141 66.7
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 5.8e-42 174.5 141 65.2
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.2e-41 172.6 141 66.0
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-40 169.1 141 64.5
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 3.9e-38 161.8 139 62.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.1e-38 161.4 141 61.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 8.7e-38 160.6 143 60.8
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 5.7e-37 157.9 141 60.3
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 9.6e-37 157.1 141 59.6
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.3e-36 156.8 142 59.9
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.1e-36 156.0 147 59.2
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.7e-36 155.2 142 60.6
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.7e-36 155.2 140 62.1
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 4.8e-36 154.8 141 59.6
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 6.3e-36 154.5 141 60.3
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-35 153.7 155 54.8
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.4e-35 153.3 142 60.6
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.1e-35 152.1 142 58.5
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 3.1e-35 152.1 139 59.7
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 4.1e-35 151.8 158 56.3
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 4.1e-35 151.8 140 59.3
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 5.3e-35 151.4 142 62.0
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 5.3e-35 151.4 141 62.4
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.9e-35 151.0 141 58.2
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 6.9e-35 151.0 141 61.0
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.2e-34 150.2 142 57.0
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.0e-34 149.4 141 58.2
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 3.4e-34 148.7 121 66.1
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 3.4e-34 148.7 141 58.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.4e-34 148.7 121 66.1
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.4e-34 148.7 121 66.1
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 3.4e-34 148.7 121 66.1
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.4e-34 148.7 133 60.9
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.5e-34 148.3 140 57.1
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 4.5e-34 148.3 141 58.9
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 4.5e-34 148.3 117 64.1
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 5.9e-34 147.9 141 61.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.0e-33 147.1 141 61.0
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.0e-33 147.1 141 57.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.0e-33 147.1 142 57.0
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-33 146.7 141 56.7
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.7e-33 146.4 140 55.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.2e-33 146.0 144 61.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.2e-33 146.0 141 58.9
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 2.9e-33 145.6 139 57.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.9e-33 145.6 211 46.0
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.0e-33 144.8 141 56.0
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 6.5e-33 144.4 117 64.1
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.5e-33 144.4 141 56.0
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.5e-33 144.4 141 55.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 8.5e-33 144.1 116 63.8
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.9e-32 142.9 139 59.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.9e-32 142.9 140 57.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.9e-32 142.9 129 62.0
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.5e-32 142.5 129 61.2
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.2e-32 142.1 87 82.8
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.2e-32 142.1 145 57.9
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.2e-32 141.7 139 58.3
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 4.2e-32 141.7 141 56.7
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 4.2e-32 141.7 111 65.8
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 5.5e-32 141.4 142 56.3
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 9.3e-32 140.6 141 54.6
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.2e-31 140.2 140 57.9
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-31 140.2 115 65.2
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.1e-31 139.4 129 61.2
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 3.6e-31 138.7 117 62.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 3.6e-31 138.7 115 60.9
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 4.6e-31 138.3 127 60.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 4.6e-31 138.3 141 53.2
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 6.1e-31 137.9 141 54.6
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 7.9e-31 137.5 113 64.6
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 7.9e-31 137.5 113 64.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.8e-30 136.3 147 53.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.3e-30 136.0 115 61.7
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.0e-30 135.6 115 64.3
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 3.0e-30 135.6 121 60.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.9e-30 135.2 142 54.2
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 5.1e-30 134.8 140 55.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 6.7e-30 134.4 141 52.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 6.7e-30 134.4 141 52.5
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 8.7e-30 134.0 141 52.5
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.1e-29 133.7 141 52.5
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.1e-29 133.7 141 52.5
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.1e-29 133.7 137 54.7
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.9e-29 132.9 115 60.0
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.9e-29 132.9 175 48.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.3e-29 132.1 126 59.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.3e-29 132.1 145 51.7
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 9.7e-29 130.6 141 52.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.3e-28 130.2 90 73.3
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.6e-28 129.8 141 51.8
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.6e-28 129.8 141 51.1
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.2e-28 129.4 142 51.4
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.2e-28 129.4 141 51.8
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.2e-28 129.4 141 51.8
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.8e-28 129.0 113 60.2
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.8e-28 129.0 141 51.1
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 2.8e-28 129.0 141 51.1
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.8e-28 129.0 128 57.8
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.8e-28 129.0 145 52.4
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.8e-28 129.0 143 52.4
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.7e-28 128.6 127 57.5
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.8e-28 128.3 113 61.9
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.4e-27 126.7 88 72.7
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.8e-27 126.3 142 54.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 2.4e-27 125.9 141 50.4
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.4e-27 125.9 113 60.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 5.3e-27 124.8 141 54.6
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.9e-27 124.4 141 48.2
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 6.9e-27 124.4 141 49.6
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 9.1e-27 124.0 141 51.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.2e-26 123.6 142 49.3
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.2e-26 123.6 150 51.3
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.0e-26 122.9 141 48.2
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.0e-26 122.9 141 49.6
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.3e-25 120.2 141 48.9
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.2e-25 119.4 117 55.6
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.4e-24 116.7 109 56.9
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.5e-24 115.9 141 47.5
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 9.4e-24 114.0 86 66.3
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.6e-23 113.2 94 64.9
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.7e-23 112.5 105 53.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.7e-23 112.5 105 53.3
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.8e-22 109.8 100 58.0
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.8e-22 109.8 106 51.9
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.1e-22 108.2 105 52.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.8e-22 107.5 89 65.2
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.8e-22 107.5 144 47.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.3e-21 105.5 112 51.8
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.7e-21 104.8 75 66.7
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.7e-20 103.2 113 50.4
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.2e-20 102.8 111 50.5
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-19 98.6 129 47.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.2e-18 97.1 92 58.7
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.2e-18 97.1 111 48.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.0e-17 94.0 87 56.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.3e-17 93.6 62 72.6
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.1e-16 90.5 59 74.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 5.5e-16 88.2 50 86.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 9.4e-16 87.4 69 60.9
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.8e-14 83.2 102 45.1
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-14 82.8 105 42.9
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-14 82.8 105 42.9
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.9e-14 82.0 84 53.6
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.5e-13 80.1 121 41.3
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.8e-11 73.2 53 62.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.4e-11 72.8 96 38.5
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.1e-11 72.4 55 67.3
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.2e-10 70.5 89 48.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.0e-09 67.4 50 72.0
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.5e-09 64.7 59 57.6
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.5e-08 61.6 96 35.4
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 3.6e-07 58.9 91 41.8
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 8.8e-06 54.3 43 58.1


User provided reference genes

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