Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001249g0030 Nicotiana tabacum HOM05D001142 ORTHO05D284837 5.4e-37 157.1 79 100.0
Nitab4.5_0001249g0020 Nicotiana tabacum HOM05D001142 ORTHO05D003453 7.6e-15 83.6 43 95.3
Nitab4.5_0000082g0460 Nicotiana tabacum HOM05D001142 ORTHO05D003453 4.9e-14 80.9 43 93.0
CAN.G641.34 Capsicum annuum HOM05D001142 ORTHO05D003453 1.2e-12 76.3 43 86.0
Solyc10g079200.2 Solanum lycopersicum HOM05D001142 ORTHO05D003453 1.2e-12 76.3 43 86.0
Sopen10g029850 Solanum pennellii HOM05D001142 ORTHO05D003453 1.6e-12 75.9 43 86.0
PGSC0003DMG400008144 Solanum tuberosum HOM05D001142 ORTHO05D003453 3.5e-12 74.7 43 83.7
CSS0034183 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D003453 6.0e-12 73.9 43 81.4
Nitab4.5_0000256g0400 Nicotiana tabacum HOM05D001142 ORTHO05D003453 7.9e-12 73.6 43 79.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 7.9e-12 73.6 43 81.4
CSS0010488 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D003453 1.0e-11 73.2 43 81.4
CSS0016592 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D003453 1.0e-11 73.2 43 81.4
CSS0017599 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D003453 1.0e-11 73.2 43 81.4
Cfa012435 Carpinus fangiana HOM05D001142 ORTHO05D003453 1.8e-11 72.4 43 79.1
Haze_08243 Corylus avellana HOM05D001142 ORTHO05D003453 1.8e-11 72.4 43 79.1
Nitab4.5_0002903g0020 Nicotiana tabacum HOM05D001142 ORTHO05D003453 2.3e-11 72.0 43 76.7
vmacro12436 Vaccinium macrocarpon HOM05D001142 ORTHO05D003453 3.9e-11 71.2 43 76.7
Cpa.g.sc71.59 Carica papaya HOM05D001142 ORTHO05D003453 5.1e-11 70.9 43 79.1
QL12p005464 Quercus lobata HOM05D001142 ORTHO05D003453 5.1e-11 70.9 43 79.1
Atru.chr6.1714 Acer truncatum HOM05D001142 ORTHO05D003453 6.7e-11 70.5 43 76.7
COL.COLO4_17040 Corchorus olitorius HOM05D001142 ORTHO05D003453 6.7e-11 70.5 43 76.7
CAN.G201.26 Capsicum annuum HOM05D001142 ORTHO05D003453 8.7e-11 70.1 43 76.7
Peaxi162Scf00130g00111 Petunia axillaris HOM05D001142 ORTHO05D003453 8.7e-11 70.1 43 79.1
Cfa012433 Carpinus fangiana HOM05D001142 ORTHO05D003453 1.1e-10 69.7 43 74.4
Gohir.A12G208500 Gossypium hirsutum HOM05D001142 ORTHO05D003453 1.1e-10 69.7 43 76.7
Gohir.D12G211100 Gossypium hirsutum HOM05D001142 ORTHO05D003453 1.1e-10 69.7 43 76.7
Gorai.008G226600 Gossypium raimondii HOM05D001142 ORTHO05D003453 1.1e-10 69.7 43 76.7
Lj2g0023038 Lotus japonicus HOM05D001142 ORTHO05D003453 1.1e-10 69.7 43 76.7
Rhsim06G0121900 Rhododendron simsii HOM05D001142 ORTHO05D003453 1.1e-10 69.7 43 74.4
PGSC0003DMG400002099 Solanum tuberosum HOM05D001142 ORTHO05D003453 1.1e-10 69.7 43 74.4
Nn1g08049 Nelumbo nucifera HOM05D001142 ORTHO05D003453 1.5e-10 69.3 43 74.4
Peaxi162Scf00615g00519 Petunia axillaris HOM05D001142 ORTHO05D003453 1.5e-10 69.3 43 74.4
CiPaw.11G092800 Carya illinoinensis HOM05D001142 ORTHO05D003453 1.9e-10 68.9 43 76.7
Psat2g136080 Pisum sativum HOM05D001142 ORTHO05D003453 1.9e-10 68.9 43 74.4
TPR.G1034 Trifolium pratense HOM05D001142 ORTHO05D003453 2.5e-10 68.6 43 74.4
Duzib205G0166 Durio zibethinus HOM05D001142 ORTHO05D003453 3.3e-10 68.2 43 74.4
Solyc06g061170.3 Solanum lycopersicum HOM05D001142 ORTHO05D003453 3.3e-10 68.2 43 72.1
Sopen06g021370 Solanum pennellii HOM05D001142 ORTHO05D003453 3.3e-10 68.2 43 72.1
Eucgr.E00280 Eucalyptus grandis HOM05D001142 ORTHO05D003453 4.3e-10 67.8 44 77.3
Glyma.01G019000 Glycine max HOM05D001142 ORTHO05D003453 4.3e-10 67.8 43 76.7
Glyma.09G203900 Glycine max HOM05D001142 ORTHO05D003453 4.3e-10 67.8 43 76.7
Psat4g120840 Pisum sativum HOM05D001142 ORTHO05D003453 4.3e-10 67.8 43 76.7
Medtr5g030530 Medicago truncatula HOM05D001142 ORTHO05D003453 5.6e-10 67.4 43 72.1
CiPaw.12G063400 Carya illinoinensis HOM05D001142 ORTHO05D003453 7.4e-10 67.0 43 74.4
Ca_06076_v3 Cicer arietinum L. HOM05D001142 ORTHO05D003453 7.4e-10 67.0 43 72.1
Potri.003G091500 Populus trichocarpa HOM05D001142 ORTHO05D003453 7.4e-10 67.0 43 74.4
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 7.4e-10 67.0 43 74.4
Thecc.03G228200 Theobroma cacao HOM05D001142 ORTHO05D003453 7.4e-10 67.0 43 72.1
CSS0035709 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D003453 9.6e-10 66.6 43 79.1
Gohir.D11G029000 Gossypium hirsutum HOM05D001142 ORTHO05D003453 9.6e-10 66.6 43 72.1
Gorai.007G031700 Gossypium raimondii HOM05D001142 ORTHO05D003453 9.6e-10 66.6 43 72.1
TPR.G15270 Trifolium pratense HOM05D001142 ORTHO05D003453 9.6e-10 66.6 43 74.4
Gohir.A03G001300 Gossypium hirsutum HOM05D001142 ORTHO05D003453 1.3e-09 66.2 40 77.5
VMungo0251G0733 Vigna mungo HOM05D001142 ORTHO05D003453 1.3e-09 66.2 43 72.1
PGR042G3261 Punica granatum HOM05D001142 ORTHO05D003453 1.6e-09 65.9 44 75.0
MSTRG.15674 Avicennia marina HOM05D001142 ORTHO05D003453 2.1e-09 65.5 43 67.4
BcaB07g30819 Brassica carinata HOM05D001142 ORTHO05D003453 2.1e-09 65.5 43 69.8
Lalb_Chr05g0228881 Lupinus albus HOM05D001142 ORTHO05D003453 2.1e-09 65.5 43 67.4
TWI60G0991 Tripterygium wilfordii HOM05D001142 ORTHO05D003453 2.1e-09 65.5 43 72.1
BcaC03g16891 Brassica carinata HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
BcaC04g21680 Brassica carinata HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
A02p30350 Brassica napus HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
A09p22560 Brassica napus HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
C02p47880 Brassica napus HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
C09p28910 Brassica napus HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
BolC2t10821H Brassica oleracea HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
BolC9t55753H Brassica oleracea HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
BraA02t08050Z Brassica rapa HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
BraA09t37862Z Brassica rapa HOM05D001142 ORTHO05D003453 2.8e-09 65.1 42 71.4
Glyma.08G272600 Glycine max HOM05D001142 ORTHO05D003453 2.8e-09 65.1 43 72.1
Lj4g0020774 Lotus japonicus HOM05D001142 ORTHO05D003453 2.8e-09 65.1 43 72.1
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 2.8e-09 65.1 43 72.1
Medtr8g066975 Medicago truncatula HOM05D001142 ORTHO05D003453 2.8e-09 65.1 43 72.1
Oeu030319.1 Olea europaea HOM05D001142 ORTHO05D003453 2.8e-09 65.1 77 49.4
SalBow6G5352 Salvia bowleyana HOM05D001142 ORTHO05D003453 2.8e-09 65.1 41 75.6
VMungo1215G2673 Vigna mungo HOM05D001142 ORTHO05D003453 2.8e-09 65.1 43 69.8
Aa31LG9G6080 Aethionema arabicum HOM05D001142 ORTHO05D003453 3.7e-09 64.7 41 73.2
Phvul.002G142100 Phaseolus vulgaris HOM05D001142 ORTHO05D003453 3.7e-09 64.7 43 69.8
TWI15G0007 Tripterygium wilfordii HOM05D001142 ORTHO05D003453 3.7e-09 64.7 43 69.8
arahy.Tifrunner.gnm1.ann1.FL7XSL Arachis hypogaea HOM05D001142 ORTHO05D003453 4.8e-09 64.3 43 72.1
arahy.Tifrunner.gnm1.ann1.SK5IQF Arachis hypogaea HOM05D001142 ORTHO05D003453 4.8e-09 64.3 43 72.1
MSTRG.3715 Avicennia marina HOM05D001142 ORTHO05D003453 4.8e-09 64.3 43 67.4
CANSAT21G2582 Cannabis sativa HOM05D001142 ORTHO05D003453 4.8e-09 64.3 43 72.1
Manes.17G013300 Manihot esculenta HOM05D001142 ORTHO05D003453 4.8e-09 64.3 43 67.4
Psat0s2998g0040 Pisum sativum HOM05D001142 ORTHO05D003453 4.8e-09 64.3 43 72.1
MELO3C013855.2 Cucumis melo HOM05D001142 ORTHO05D003453 6.2e-09 63.9 43 67.4
Phvul.003G285400 Phaseolus vulgaris HOM05D001142 ORTHO05D003453 6.2e-09 63.9 43 69.8
Sp2g11620 Schrenkiella parvula HOM05D001142 ORTHO05D003453 6.2e-09 63.9 42 69.0
THA.LOC104812827 Tarenaya hassleriana HOM05D001142 ORTHO05D003453 6.2e-09 63.9 42 71.4
Gohir.A11G030400 Gossypium hirsutum HOM05D001142 ORTHO05D003453 8.1e-09 63.5 43 67.4
Lj3g0007103 Lotus japonicus HOM05D001142 ORTHO05D003453 8.1e-09 63.5 43 69.8
Lalb_Chr16g0392041 Lupinus albus HOM05D001142 ORTHO05D003453 8.1e-09 63.5 43 67.4
RcHm_v2.0_Chr7g0209661 Rosa chinensis HOM05D001142 ORTHO05D003453 8.1e-09 63.5 43 69.8
Actinidia09213 Actinidia chinensis HOM05D001142 ORTHO05D003453 1.1e-08 63.2 43 67.4
Ca_22638_v3 Cicer arietinum L. HOM05D001142 ORTHO05D003453 1.1e-08 63.2 43 69.8
Gohir.D03G170966 Gossypium hirsutum HOM05D001142 ORTHO05D003453 1.1e-08 63.2 40 75.0
Gorai.003G181500 Gossypium raimondii HOM05D001142 ORTHO05D003453 1.1e-08 63.2 40 75.0
AT5G46800 Arabidopsis thaliana HOM05D001142 ORTHO05D003453 1.4e-08 62.8 42 69.0
BcaC06g31442 Brassica carinata HOM05D001142 ORTHO05D003453 1.4e-08 62.8 42 69.0
BcaC06g34345 Brassica carinata HOM05D001142 ORTHO05D003453 1.4e-08 62.8 42 69.0
A06p45640 Brassica napus HOM05D001142 ORTHO05D003453 1.4e-08 62.8 42 69.0
C07p30120 Brassica napus HOM05D001142 ORTHO05D003453 1.4e-08 62.8 42 69.0
BolC7t43552H Brassica oleracea HOM05D001142 ORTHO05D003453 1.4e-08 62.8 42 69.0
BraA06t27433Z Brassica rapa HOM05D001142 ORTHO05D003453 1.4e-08 62.8 42 69.0
Glyma.01G097100 Glycine max HOM05D001142 ORTHO05D003453 1.4e-08 62.8 43 67.4
CsaV3_3G001750 Cucumis sativus L. HOM05D001142 ORTHO05D003453 1.8e-08 62.4 43 65.1
Lalb_Chr09g0325711 Lupinus albus HOM05D001142 ORTHO05D003453 1.8e-08 62.4 43 65.1
SalBow3G2134 Salvia bowleyana HOM05D001142 ORTHO05D003453 1.8e-08 62.4 43 67.4
SalBow5G3303 Salvia bowleyana HOM05D001142 ORTHO05D003453 1.8e-08 62.4 36 80.6
ClCG10G001630 Citrullus lanatus HOM05D001142 ORTHO05D003453 2.4e-08 62.0 43 65.1
Thhalv10000972m.g Eutrema salsugineum HOM05D001142 ORTHO05D003453 2.4e-08 62.0 77 50.6
FvH4_7g06810 Fragaria vesca HOM05D001142 ORTHO05D003453 2.4e-08 62.0 40 72.5
FAN01G1552 Fragaria x ananassa HOM05D001142 ORTHO05D003453 2.4e-08 62.0 40 72.5
FAN03G0269 Fragaria x ananassa HOM05D001142 ORTHO05D003453 2.4e-08 62.0 40 72.5
FAN06G5013 Fragaria x ananassa HOM05D001142 ORTHO05D003453 2.4e-08 62.0 40 72.5
MD16G1274700 Malus domestica HOM05D001142 ORTHO05D003453 2.4e-08 62.0 43 69.8
unitig_748.g8640 Utricularia gibba HOM05D001142 ORTHO05D003453 2.4e-08 62.0 40 70.0
AL8G11520 Arabidopsis lyrata HOM05D001142 ORTHO05D003453 3.1e-08 61.6 42 66.7
Potri.001G142600 Populus trichocarpa HOM05D001142 ORTHO05D003453 3.1e-08 61.6 43 74.4
Sabra01G0111400 Salix brachista HOM05D001142 ORTHO05D003453 3.1e-08 61.6 43 74.4
SalBow5G2069 Salvia bowleyana HOM05D001142 ORTHO05D003453 3.1e-08 61.6 36 80.6
SGA_v2.0_scaffold45G17185 Striga asiatica HOM05D001142 ORTHO05D003453 3.1e-08 61.6 43 62.8
Carub.0008s0111 Capsella rubella HOM05D001142 ORTHO05D003453 4.0e-08 61.2 42 66.7
Duzib084G0367 Durio zibethinus HOM05D001142 ORTHO05D003453 4.0e-08 61.2 43 65.1
arahy.Tifrunner.gnm1.ann1.G3H6Y6 Arachis hypogaea HOM05D001142 ORTHO05D003453 5.3e-08 60.8 44 70.5
Ciclev10012332m.g Citrus clementina HOM05D001142 ORTHO05D003453 5.3e-08 60.8 43 65.1
Duzib068G1296 Durio zibethinus HOM05D001142 ORTHO05D003453 6.9e-08 60.5 43 65.1
Mapoly0051s0030 Marchantia polymorpha HOM05D001142 ORTHO05D003453 6.9e-08 60.5 42 64.3
CARHR174680 Cardamine hirsuta HOM05D001142 ORTHO05D003453 9.0e-08 60.1 77 48.1
unitig_32.g11799 Utricularia gibba HOM05D001142 ORTHO05D003453 9.0e-08 60.1 40 67.5
HanXRQChr03g0083971 Helianthus annuus HOM05D001142 ORTHO05D003453 1.2e-07 59.7 40 70.0
MD06G1033900 Malus domestica HOM05D001142 ORTHO05D003453 1.2e-07 59.7 43 65.1
TAR629G1011 Trochodendron aralioides HOM05D001142 ORTHO05D003453 1.2e-07 59.7 71 46.5
Migut.K00898 Erythranthe guttata HOM05D001142 ORTHO05D003453 1.5e-07 59.3 34 79.4
CsaV3_3G049220 Cucumis sativus L. HOM05D001142 ORTHO05D003453 2.0e-07 58.9 43 65.1
Lsat_1_v5_gn_3_17700 Lactuca sativa HOM05D001142 ORTHO05D003453 2.0e-07 58.9 56 57.1
Prupe.8G063200 Prunus persica HOM05D001142 ORTHO05D003453 2.0e-07 58.9 43 62.8
Sed0015572 Sechium edule HOM05D001142 ORTHO05D003453 2.0e-07 58.9 43 60.5
Hund14400 Selenicereus undatus HOM05D001142 ORTHO05D003453 2.0e-07 58.9 43 69.8
THA.LOC104827762 Tarenaya hassleriana HOM05D001142 ORTHO05D003453 2.0e-07 58.9 42 66.7
Aqoxy3G02359 Aquilegia oxysepala HOM05D001142 ORTHO05D003453 2.6e-07 58.5 43 62.8
CSS0044536 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D003453 2.6e-07 58.5 33 78.8
CDE02G4080 Ceratophyllum demersum HOM05D001142 ORTHO05D003453 2.6e-07 58.5 43 62.8
HanXRQChr13g0414141 Helianthus annuus HOM05D001142 ORTHO05D003453 2.6e-07 58.5 39 66.7
HanXRQChr17g0535811 Helianthus annuus HOM05D001142 ORTHO05D003453 2.6e-07 58.5 36 75.0
Cc09_g09300 Coffea canephora HOM05D001142 ORTHO05D003453 3.4e-07 58.2 43 67.4
MBI04_g22929_MAGBIO Magnolia biondii HOM05D001142 ORTHO05D003453 3.4e-07 58.2 43 60.5
Aqoxy3G02364 Aquilegia oxysepala HOM05D001142 ORTHO05D003453 4.5e-07 57.8 43 60.5
DCAR_024965 Daucus carota HOM05D001142 ORTHO05D003453 4.5e-07 57.8 43 67.4
Hma1.2p1_0991F.1_g245110 Hydrangea macrophylla HOM05D001142 ORTHO05D003453 4.5e-07 57.8 37 73.0
Oeu032325.1 Olea europaea HOM05D001142 ORTHO05D003453 4.5e-07 57.8 43 69.8
Os10g0573700 Oryza sativa ssp. japonica HOM05D001142 ORTHO05D003453 4.5e-07 57.8 37 70.3
Oeu012256.1 Olea europaea HOM05D001142 ORTHO05D003453 5.8e-07 57.4 43 67.4
ECA246G1249 Erigeron canadensis HOM05D001142 ORTHO05D003453 7.6e-07 57.0 44 63.6
ECA246G2988 Erigeron canadensis HOM05D001142 ORTHO05D003453 7.6e-07 57.0 38 63.2
Lj3g0012112 Lotus japonicus HOM05D001142 ORTHO05D003453 7.6e-07 57.0 43 65.1
HPP92_014618 Vanilla planifolia HOM05D001142 ORTHO05D003453 7.6e-07 57.0 41 65.9
AUR62007287 Chenopodium quinoa HOM05D001142 ORTHO05D003453 9.9e-07 56.6 43 65.1
DCAR_031775 Daucus carota HOM05D001142 ORTHO05D003453 9.9e-07 56.6 43 65.1
ECA240G3457 Erigeron canadensis HOM05D001142 ORTHO05D003453 9.9e-07 56.6 39 66.7
HanXRQChr06g0167461 Helianthus annuus HOM05D001142 ORTHO05D003453 9.9e-07 56.6 34 70.6
Lsat_1_v5_gn_6_79421 Lactuca sativa HOM05D001142 ORTHO05D003453 9.9e-07 56.6 38 63.2
SMO174G0187 Selaginella moellendorffii HOM05D001142 ORTHO05D003453 9.9e-07 56.6 45 66.7
Ah.12g055010 Amaranthus hybridus HOM05D001142 ORTHO05D003453 1.3e-06 56.2 43 65.1
AUR62018719 Chenopodium quinoa HOM05D001142 ORTHO05D003453 1.3e-06 56.2 43 65.1
HPP92_022443 Vanilla planifolia HOM05D001142 ORTHO05D003453 1.7e-06 55.8 38 57.9
DCAR_005627 Daucus carota HOM05D001142 ORTHO05D003453 2.2e-06 55.5 43 65.1
GSVIVG01013163001 Vitis vinifera HOM05D001142 ORTHO05D003453 2.2e-06 55.5 35 74.3
EL10Ac5g12126 Beta vulgaris HOM05D001142 ORTHO05D003453 2.9e-06 55.1 43 62.8
ClCG09G011960 Citrullus lanatus HOM05D001142 ORTHO05D003453 2.9e-06 55.1 43 62.8
Pp3c21_9970 Physcomitrium patens HOM05D001142 ORTHO05D003453 2.9e-06 55.1 43 62.8
MELO3C003405.2 Cucumis melo HOM05D001142 ORTHO05D003453 3.8e-06 54.7 43 62.8
Manes.15G182000 Manihot esculenta HOM05D001142 ORTHO05D003453 3.8e-06 54.7 78 44.9
MELO3C003407.2 Cucumis melo HOM05D001142 ORTHO05D003453 4.9e-06 54.3 43 62.8
FAN10G3996 Fragaria x ananassa HOM05D001142 ORTHO05D003453 4.9e-06 54.3 33 72.7
ClCG09G011950 Citrullus lanatus HOM05D001142 ORTHO05D003453 6.4e-06 53.9 43 62.8
Lj2A240T32 Lonicera japonica HOM05D001142 ORTHO05D003453 6.4e-06 53.9 40 70.0
SEGI_29281 Sequoiadendron giganteum HOM05D001142 ORTHO05D003453 8.4e-06 53.5 36 58.3


User provided reference genes

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