Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 6.9e-190 667.2 337 100.0
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 4.9e-180 634.4 343 94.5
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.4e-179 632.9 343 94.5
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 6.7e-169 597.4 342 90.4
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 5.3e-166 587.8 339 90.0
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 8.8e-153 543.9 331 83.7
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.1e-152 543.5 351 82.1
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.0e-152 542.7 341 80.6
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 3.7e-151 538.5 328 82.6
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 4.1e-150 535.0 330 81.2
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 5.3e-150 534.6 327 81.3
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.6e-149 532.3 329 81.2
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 2.6e-149 532.3 327 81.0
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 3.4e-149 531.9 326 80.4
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 5.9e-149 531.2 326 80.4
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.7e-149 530.8 353 76.5
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.7e-149 530.8 353 76.5
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 7.7e-149 530.8 326 81.0
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.3e-148 530.0 338 79.0
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.3e-148 530.0 326 82.2
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.7e-148 529.6 329 80.9
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.7e-148 529.6 332 80.1
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.2e-148 529.3 330 80.3
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 2.9e-148 528.9 326 80.1
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.9e-148 528.9 326 81.0
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.8e-148 528.5 326 80.1
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.8e-148 528.5 327 80.7
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 6.5e-148 527.7 326 80.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 8.5e-148 527.3 327 80.7
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 5.5e-147 524.6 326 79.8
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 5.5e-147 524.6 344 77.9
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.2e-146 523.5 338 80.2
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.6e-146 523.1 334 79.6
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 2.7e-146 522.3 353 76.8
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 4.7e-146 521.5 344 77.9
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 6.1e-146 521.2 340 79.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.9e-146 520.8 338 77.5
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.4e-145 520.0 340 77.9
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.8e-145 519.6 338 77.2
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 2.3e-145 519.2 330 79.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 3.9e-145 518.5 343 77.6
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 5.1e-145 518.1 334 78.7
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 6.7e-145 517.7 343 77.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 6.7e-145 517.7 331 78.5
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 8.8e-145 517.3 330 78.8
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 8.8e-145 517.3 332 78.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.1e-144 516.9 329 78.4
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 1.5e-144 516.5 329 77.8
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.5e-144 516.5 331 78.9
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.5e-144 516.5 339 77.9
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.0e-144 516.2 330 78.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 3.3e-144 515.4 335 77.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 4.4e-144 515.0 305 82.6
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 5.7e-144 514.6 319 80.9
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.7e-143 513.1 331 77.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.7e-143 513.1 339 76.7
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.7e-143 513.1 364 73.4
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 4.8e-143 511.5 340 75.3
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 8.2e-143 510.8 311 81.4
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.1e-142 510.4 331 77.9
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.1e-142 510.4 358 74.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.4e-142 510.0 323 81.7
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.8e-142 509.6 304 82.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 3.1e-142 508.8 330 78.5
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 9.1e-142 507.3 332 76.5
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 9.1e-142 507.3 330 77.3
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.1e-142 507.3 338 75.7
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 9.1e-142 507.3 326 77.9
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.2e-141 506.9 348 73.0
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.5e-141 506.5 331 77.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 2.6e-141 505.8 331 77.3
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 4.5e-141 505.0 406 67.2
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.3e-140 503.4 335 76.1
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 3.8e-140 501.9 337 74.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 6.5e-140 501.1 342 75.7
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.5e-139 500.0 382 67.3
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.9e-139 499.6 329 76.6
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.2e-139 498.8 335 76.4
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 7.2e-139 497.7 299 81.9
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 3.6e-138 495.4 339 76.1
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 3.0e-137 492.3 291 83.5
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 4.0e-137 491.9 334 75.4
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 6.7e-137 491.1 297 80.8
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 6.7e-137 491.1 337 75.7
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 8.8e-137 490.7 310 80.0
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 8.8e-137 490.7 321 75.7
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 8.8e-137 490.7 335 75.5
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.3e-135 486.9 308 79.5
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.2e-135 486.1 332 73.5
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.1e-134 482.3 284 81.7
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 3.1e-134 482.3 308 76.9
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 7.0e-134 481.1 337 73.0
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.9e-131 473.0 270 85.9
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.6e-130 469.9 285 78.6
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.1e-130 469.5 359 68.2
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 8.0e-130 467.6 339 71.7
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.0e-129 465.7 344 71.5
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.0e-129 465.3 332 73.2
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.6e-128 462.6 272 82.0
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.6e-128 462.6 343 69.7
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.8e-127 458.4 367 70.6
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 8.3e-127 457.6 325 72.3
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.4e-126 456.1 329 71.7
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.6e-125 453.4 316 75.6
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.3e-124 450.3 270 81.1
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.2e-124 449.5 321 74.1
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.8e-121 439.9 326 71.8
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 3.0e-121 439.1 293 75.8
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 6.8e-121 438.0 297 76.1
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.2e-117 427.2 298 68.8
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.6e-114 415.6 283 69.6
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 8.0e-114 414.5 290 75.5
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 8.9e-113 411.0 263 78.7
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.1e-110 404.1 292 71.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.8e-110 403.3 287 70.0
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 6.6e-108 394.8 272 70.6
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 6.2e-106 388.3 275 72.4
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.8e-105 386.7 256 74.6
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.5e-99 366.3 320 61.2
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.4e-94 350.5 228 77.2
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.2e-88 330.9 222 77.9
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.7e-87 327.0 228 75.9
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 7.1e-70 268.5 154 90.9
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.8e-65 253.8 347 48.4
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 3.9e-60 236.1 139 82.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 7.4e-59 231.9 153 71.9
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.6e-58 230.7 139 79.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.1e-58 230.3 184 68.5
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.3e-50 204.5 132 72.7
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 4.2e-46 189.5 108 80.6
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-44 184.5 108 77.8
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 8.5e-39 165.2 275 41.8
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 2.1e-37 160.6 126 59.5
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 4.1e-33 146.4 307 31.6
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 5.3e-33 146.0 112 64.3
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-28 131.7 117 59.0
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 5.7e-27 125.9 163 47.9
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.5e-22 111.3 318 30.8
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.5e-22 111.3 87 59.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.3e-20 104.0 71 69.0
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 4.4e-19 99.8 53 92.5
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 9.7e-19 98.6 91 59.3
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.3e-18 98.2 93 60.2
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.4e-17 94.0 49 83.7
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 2.7e-16 90.5 49 85.7
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 7.7e-16 89.0 49 79.6
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 5.0e-15 86.3 78 52.6
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 7.2e-14 82.4 50 76.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.8e-09 67.8 37 78.4
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 7.7e-08 62.4 58 62.1
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.1e-06 58.5 31 87.1


User provided reference genes

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