Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 7.6e-136 487.3 262 100.0
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 1.0e-103 380.6 262 80.5
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 2.0e-75 286.6 262 65.3
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 3.3e-75 285.8 262 64.9
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 5.7e-67 258.5 206 70.4
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 2.8e-53 213.0 262 54.6
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.7e-50 203.8 242 55.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 4.5e-48 195.7 239 56.9
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 1.0e-44 184.5 261 44.8
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 8.9e-44 181.4 190 55.3
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.6e-43 179.9 262 43.5
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 1.3e-42 177.6 188 53.7
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 7.0e-41 171.8 261 44.1
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 1.3e-39 167.5 263 43.3
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 2.5e-38 163.3 192 50.5
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 2.5e-38 163.3 260 42.7
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 4.3e-38 162.5 259 41.3
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 9.5e-38 161.4 264 41.3
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 3.4e-35 152.9 261 40.2
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 5.8e-35 152.1 261 39.8
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 4.9e-34 149.1 261 40.2
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.1e-33 147.9 263 38.4
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 5.4e-33 145.6 267 40.1
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 1.2e-32 144.4 256 40.2
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.6e-32 144.1 263 41.1
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 6.0e-32 142.1 262 37.8
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.3e-31 141.0 262 38.2
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 2.3e-31 140.2 268 36.2
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 2.5e-30 136.7 261 37.2
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 2.5e-30 136.7 182 44.5
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 2.5e-30 136.7 123 57.7
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 1.2e-29 134.4 186 43.5
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 4.7e-29 132.5 262 38.5
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 4.4e-27 125.9 268 34.3
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 1.3e-26 124.4 200 44.0
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 6.4e-26 122.1 265 34.7
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 6.4e-26 122.1 265 34.7
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 8.3e-26 121.7 264 35.6
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 2.4e-25 120.2 270 34.8
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 3.2e-25 119.8 260 35.8
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 7.1e-25 118.6 148 50.0
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.1e-24 117.1 242 37.2
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.5e-24 116.3 262 34.0
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 1.0e-23 114.8 195 44.1
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.3e-23 114.4 258 36.4
Solyc11g070183.1 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.7e-23 114.0 118 62.7
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 2.3e-23 113.6 263 34.6
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 5.1e-23 112.5 264 33.7
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 5.1e-23 112.5 192 36.5
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 6.6e-23 112.1 192 39.1
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 1.5e-22 110.9 262 34.0
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 2.5e-22 110.2 112 56.2
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 3.3e-22 109.8 261 33.3
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 5.6e-22 109.0 259 32.8
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 7.3e-22 108.6 262 33.2
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 7.3e-22 108.6 97 60.8
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 9.6e-22 108.2 263 33.8
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 9.6e-22 108.2 263 33.8
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 9.6e-22 108.2 127 49.6
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 4.7e-21 105.9 264 32.2
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 8.1e-21 105.1 262 33.6
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 8.1e-21 105.1 268 32.5
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 1.8e-20 104.0 262 33.6
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 1.8e-20 104.0 261 33.7
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 4.0e-20 102.8 257 33.5
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 8.9e-20 101.7 199 36.2
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 1.5e-19 100.9 267 33.0
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 2.0e-19 100.5 189 41.3
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 4.4e-19 99.4 191 39.3
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 2.9e-18 96.7 102 55.9
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 1.9e-17 94.0 261 30.3
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 3.2e-17 93.2 166 38.6
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 5.4e-17 92.4 86 57.0
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 7.1e-17 92.0 259 32.0
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 1.2e-16 91.3 190 38.4
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 7.8e-16 88.6 259 30.5
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 2.3e-15 87.0 261 29.9
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 3.9e-15 86.3 93 46.2
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 3.9e-15 86.3 261 31.8
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 3.9e-15 86.3 191 33.5
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 3.9e-15 86.3 124 47.6
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 8.7e-15 85.1 190 36.3
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 1.1e-14 84.7 204 36.8
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 1.9e-14 84.0 222 34.7
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 1.9e-14 84.0 102 52.9
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 5.6e-14 82.4 261 28.0
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 8.1e-13 78.6 199 31.7
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 8.1e-13 78.6 278 26.3
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 5.3e-12 75.9 190 34.7
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 2.6e-11 73.6 262 28.6
HanXRQChr09g0265731 Helianthus annuus HOM05D007214 ORTHO05D008907 5.8e-11 72.4 231 29.0
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 7.6e-11 72.0 196 31.6
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 9.9e-11 71.6 106 38.7
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 8.4e-10 68.6 153 34.0
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 1.4e-09 67.8 259 27.4
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 3.2e-09 66.6 52 69.2
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 5.4e-09 65.9 81 50.6
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 9.3e-09 65.1 46 71.7
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 2.7e-08 63.5 183 25.1
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 4.6e-08 62.8 195 27.7
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 7.8e-08 62.0 262 27.5
MD17G1043300 Malus domestica HOM05D007214 ORTHO05D008907 7.8e-08 62.0 52 57.7
Rhsim12G0075800 Rhododendron simsii HOM05D000660 ORTHO05D008907 8.7e-07 58.5 83 45.8
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 1.5e-06 57.8 91 40.7
Hund13295 Selenicereus undatus HOM05D007214 ORTHO05D008907 9.6e-06 55.1 118 37.3


User provided reference genes

Program Settings