Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001233g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 8.5e-114 413.7 210 100.0
Nitab4.5_0000513g0170 Nicotiana tabacum HOM05D003304 ORTHO05D003762 4.1e-31 139.0 415 33.0
Nitab4.5_0000570g0270 Nicotiana tabacum HOM05D003304 ORTHO05D003762 3.8e-29 132.5 307 37.8
Nitab4.5_0005362g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 1.9e-25 120.2 215 41.9
Nitab4.5_0004498g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 9.7e-25 117.9 145 53.1
Oeu001109.1 Olea europaea HOM05D003304 ORTHO05D003762 1.1e-23 114.4 375 31.7
CAN.G261.4 Capsicum annuum HOM05D003304 ORTHO05D003762 5.3e-23 112.1 119 61.3
PGSC0003DMG400004631 Solanum tuberosum HOM05D003304 ORTHO05D003762 1.0e-21 107.8 338 32.2
Actinidia14289 Actinidia chinensis HOM05D003304 ORTHO05D003762 5.0e-21 105.5 191 43.5
Nitab4.5_0000895g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 5.0e-21 105.5 163 45.4
CSS0031454 Camellia sinensis var. sinensis HOM05D003304 ORTHO05D003762 8.5e-21 104.8 82 70.7
Sopen12g034120 Solanum pennellii HOM05D003304 ORTHO05D003762 8.5e-21 104.8 343 31.5
Solyc12g099450.3 Solanum lycopersicum HOM05D003304 ORTHO05D003762 2.5e-20 103.2 340 31.8
MSTRG.3901 Avicennia marina HOM05D003304 ORTHO05D003762 1.2e-19 100.9 396 29.3
Solyc01g066640.2 Solanum lycopersicum HOM05D003304 ORTHO05D003762 1.6e-19 100.5 100 63.0
PGSC0003DMG400035598 Solanum tuberosum HOM05D003304 ORTHO05D003762 6.1e-19 98.6 74 71.6
Sopen01g028290 Solanum pennellii HOM05D003304 ORTHO05D003762 7.9e-19 98.2 74 71.6
Oeu006408.1 Olea europaea HOM05D003304 ORTHO05D003762 1.0e-18 97.8 238 35.3
Dinv29740 Davidia involucrata HOM05D003304 ORTHO05D003762 2.3e-18 96.7 369 29.3
CAN.G484.45 Capsicum annuum HOM05D003304 ORTHO05D003762 1.1e-17 94.4 163 41.1
DCAR_023290 Daucus carota HOM05D003304 ORTHO05D003762 3.3e-17 92.8 142 45.1
Peaxi162Scf00646g00329 Petunia axillaris HOM05D003304 ORTHO05D003762 2.2e-16 90.1 285 31.6
Peaxi162Scf00246g00127 Petunia axillaris HOM05D003304 ORTHO05D003762 2.8e-16 89.7 147 46.9
Migut.G00140 Erythranthe guttata HOM05D003304 ORTHO05D003762 1.8e-15 87.0 94 57.4
Hma1.2p1_0078F.1_g040430 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 1.8e-15 87.0 193 35.2
Actinidia19582 Actinidia chinensis HOM05D003304 ORTHO05D003762 3.1e-15 86.3 88 59.1
HanXRQChr03g0089411 Helianthus annuus HOM05D003304 ORTHO05D003762 5.3e-15 85.5 67 70.1
Oeu053986.1 Olea europaea HOM05D003304 ORTHO05D003762 9.1e-15 84.7 404 27.7
Lsat_1_v5_gn_6_95300 Lactuca sativa HOM05D003304 ORTHO05D003762 1.2e-14 84.3 67 70.1
Rhsim02G0007700 Rhododendron simsii HOM05D003304 ORTHO05D003762 1.2e-14 84.3 90 55.6
HanXRQChr13g0420021 Helianthus annuus HOM05D003304 ORTHO05D003762 1.5e-14 84.0 65 70.8
Cc03_g01680 Coffea canephora HOM05D003304 ORTHO05D003762 2.6e-14 83.2 55 70.9
ECA240G0321 Erigeron canadensis HOM05D003304 ORTHO05D003762 5.9e-14 82.0 71 66.2
Actinidia40286 Actinidia chinensis HOM05D003304 ORTHO05D003762 1.7e-13 80.5 88 56.8
Migut.N00085 Erythranthe guttata HOM05D003304 ORTHO05D003762 1.7e-13 80.5 55 70.9
Oeu016250.1 Olea europaea HOM05D003304 ORTHO05D003762 2.9e-13 79.7 317 28.7
unitig_748.g8726 Utricularia gibba HOM05D003304 ORTHO05D003762 6.5e-13 78.6 179 37.4
Hma1.2p1_0147F.1_g065875 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 1.1e-12 77.8 55 65.5
Hma1.2p1_1784F.1_g302143 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 1.1e-12 77.8 55 65.5
DCAR_027060 Daucus carota HOM05D003304 ORTHO05D003762 2.5e-12 76.6 56 66.1
Oeu016249.1 Olea europaea HOM05D003304 ORTHO05D003762 3.2e-12 76.3 316 28.5
SGA_v2.0_scaffold67G22614 Striga asiatica HOM05D003304 ORTHO05D003762 5.5e-12 75.5 149 41.6
Sabra10G0007700 Salix brachista HOM05D003304 ORTHO05D003762 1.2e-11 74.3 180 34.4
Potri.010G012000 Populus trichocarpa HOM05D003304 ORTHO05D003762 3.6e-11 72.8 388 25.3
Thecc.04G287300 Theobroma cacao HOM05D003304 ORTHO05D003762 6.1e-11 72.0 62 64.5
Atru.chr6.1996 Acer truncatum HOM05D003304 ORTHO05D003762 7.9e-11 71.6 60 66.7
BcaB07g34216 Brassica carinata HOM05D003304 ORTHO05D003762 1.0e-10 71.2 154 37.7
SGA_v2.0_scaffold18G08346 Striga asiatica HOM05D003304 ORTHO05D003762 1.0e-10 71.2 82 54.9
CANSAT78G0081 Cannabis sativa HOM05D003304 ORTHO05D003762 1.8e-10 70.5 69 60.9
Gohir.D10G171500 Gossypium hirsutum HOM05D003304 ORTHO05D003762 1.8e-10 70.5 112 43.8
Gorai.011G191600 Gossypium raimondii HOM05D003304 ORTHO05D003762 1.8e-10 70.5 112 43.8
Gohir.A10G165400 Gossypium hirsutum HOM05D003304 ORTHO05D003762 2.3e-10 70.1 55 65.5
QL06p009983 Quercus lobata HOM05D003304 ORTHO05D003762 3.0e-10 69.7 79 55.7
QL93p2007_0071 Quercus lobata HOM05D003304 ORTHO05D003762 3.0e-10 69.7 79 55.7
Ciclev10004985m.g Citrus clementina HOM05D003304 ORTHO05D003762 3.9e-10 69.3 60 65.0
SalBow5G3057 Salvia bowleyana HOM05D003304 ORTHO05D003762 3.9e-10 69.3 332 27.4
SGA_v2.0_scaffold9G04881 Striga asiatica HOM05D003304 ORTHO05D003762 6.7e-10 68.6 79 49.4
COL.COLO4_13834 Corchorus olitorius HOM05D003304 ORTHO05D003762 1.5e-09 67.4 62 61.3
A02p37880 Brassica napus HOM05D003304 ORTHO05D003762 2.0e-09 67.0 351 27.4
Aqoxy3G03400 Aquilegia oxysepala HOM05D003304 ORTHO05D003762 2.6e-09 66.6 59 64.4
RcHm_v2.0_Chr4g0422951 Rosa chinensis HOM05D003304 ORTHO05D003762 2.6e-09 66.6 132 38.6
unitig_32.g11868 Utricularia gibba HOM05D003304 ORTHO05D003762 2.6e-09 66.6 202 34.2
SGA_v2.0_scaffold428G51527 Striga asiatica HOM05D003304 ORTHO05D003762 3.3e-09 66.2 175 34.3
BraA02t08771Z Brassica rapa HOM05D003304 ORTHO05D003762 4.4e-09 65.9 355 26.2
unitig_26.g10550 Utricularia gibba HOM05D003304 ORTHO05D003762 4.4e-09 65.9 174 35.6
Medtr4g120050 Medicago truncatula HOM05D003304 ORTHO05D003762 5.7e-09 65.5 67 56.7
Carub.0008s0891 Capsella rubella HOM05D003304 ORTHO05D003762 9.7e-09 64.7 165 35.2
CiPaw.02G081100 Carya illinoinensis HOM05D003304 ORTHO05D003762 9.7e-09 64.7 51 62.7
FAN07G2181 Fragaria x ananassa HOM05D003304 ORTHO05D003762 9.7e-09 64.7 123 40.7
Manes.15G011400 Manihot esculenta HOM05D003304 ORTHO05D003762 9.7e-09 64.7 198 33.8
PSO357G0352 Papaver somniferum HOM05D003304 ORTHO05D003762 9.7e-09 64.7 49 65.3
PGR031G2491 Punica granatum HOM05D003304 ORTHO05D003762 9.7e-09 64.7 64 53.1
TWI09G1044 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 9.7e-09 64.7 197 35.0
FAN17G2918 Fragaria x ananassa HOM05D003304 ORTHO05D003762 1.3e-08 64.3 108 43.5
TPR.G3216 Trifolium pratense HOM05D003304 ORTHO05D003762 1.3e-08 64.3 64 57.8
Haze_01180 Corylus avellana HOM05D003304 ORTHO05D003762 1.7e-08 63.9 49 65.3
Duzib212G1014 Durio zibethinus HOM05D003304 ORTHO05D003762 1.7e-08 63.9 49 65.3
Glyma.15G149700 Glycine max HOM05D003304 ORTHO05D003762 1.7e-08 63.9 312 27.9
Sabra08G0152100 Salix brachista HOM05D003304 ORTHO05D003762 1.7e-08 63.9 40 75.0
Hund24887 Selenicereus undatus HOM05D003304 ORTHO05D003762 1.7e-08 63.9 61 55.7
CDE02G3640 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 2.2e-08 63.5 178 37.1
Duzib052G0413 Durio zibethinus HOM05D003304 ORTHO05D003762 2.2e-08 63.5 105 44.8
Thhalv10004314m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 2.2e-08 63.5 200 31.5
TAR622G1126 Trochodendron aralioides HOM05D003304 ORTHO05D003762 2.2e-08 63.5 46 67.4
AT5G49100 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 2.8e-08 63.2 166 31.3
PSO170G6833 Papaver somniferum HOM05D003304 ORTHO05D003762 2.8e-08 63.2 55 60.0
CiPaw.01G146800 Carya illinoinensis HOM05D003304 ORTHO05D003762 3.7e-08 62.8 49 63.3
Potri.008G220700 Populus trichocarpa HOM05D003304 ORTHO05D003762 3.7e-08 62.8 91 46.2
TWI73G0854 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 3.7e-08 62.8 49 65.3
AL8G22610 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 4.8e-08 62.4 165 32.7
BcaC03g17695 Brassica carinata HOM05D003304 ORTHO05D003762 4.8e-08 62.4 347 23.6
C02p57040 Brassica napus HOM05D003304 ORTHO05D003762 4.8e-08 62.4 347 23.6
BolC2t11774H Brassica oleracea HOM05D003304 ORTHO05D003762 4.8e-08 62.4 347 23.6
FvH4_4g18460 Fragaria vesca HOM05D003304 ORTHO05D003762 4.8e-08 62.4 141 37.6
BolC1t05580H Brassica oleracea HOM05D003304 ORTHO05D003762 6.3e-08 62.0 165 34.5
FAN12G0090 Fragaria x ananassa HOM05D003304 ORTHO05D003762 6.3e-08 62.0 138 37.7
Lalb_Chr13g0303541 Lupinus albus HOM05D003304 ORTHO05D003762 6.3e-08 62.0 148 35.8
Phvul.003G096600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 6.3e-08 62.0 62 58.1
TWI53G1575 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 6.3e-08 62.0 84 47.6
VMungo1215G1188 Vigna mungo HOM05D003304 ORTHO05D003762 6.3e-08 62.0 62 58.1
Prupe.1G133400 Prunus persica HOM05D003304 ORTHO05D003762 8.2e-08 61.6 43 67.4
BraA01t04408Z Brassica rapa HOM05D003304 ORTHO05D003762 1.1e-07 61.2 171 36.3
FAN12G1565 Fragaria x ananassa HOM05D003304 ORTHO05D003762 1.1e-07 61.2 190 29.5
Manes.03G197200 Manihot esculenta HOM05D003304 ORTHO05D003762 1.1e-07 61.2 53 60.4
C07p39670 Brassica napus HOM05D003304 ORTHO05D003762 1.4e-07 60.8 50 62.0
BolC7t44491H Brassica oleracea HOM05D003304 ORTHO05D003762 1.4e-07 60.8 50 62.0
Cpa.g.sc16.193 Carica papaya HOM05D003304 ORTHO05D003762 1.4e-07 60.8 46 63.0
CsaV3_6G023920 Cucumis sativus L. HOM05D003304 ORTHO05D003762 1.4e-07 60.8 55 58.2
Glyma.09G043300 Glycine max HOM05D003304 ORTHO05D003762 1.4e-07 60.8 324 29.9
Glyma.17G027500 Glycine max HOM05D003304 ORTHO05D003762 1.4e-07 60.8 61 55.7
THA.LOC104803101 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 1.4e-07 60.8 59 57.6
Lalb_Chr15g0083391 Lupinus albus HOM05D003304 ORTHO05D003762 1.8e-07 60.5 228 30.7
Nn4g22032 Nelumbo nucifera HOM05D003304 ORTHO05D003762 1.8e-07 60.5 53 60.4
SalBow2G2784 Salvia bowleyana HOM05D003304 ORTHO05D003762 1.8e-07 60.5 42 73.8
Lj4g0014231 Lotus japonicus HOM05D003304 ORTHO05D003762 3.1e-07 59.7 75 48.0
GSVIVG01035139001 Vitis vinifera HOM05D003304 ORTHO05D003762 3.1e-07 59.7 49 59.2
CDE09G0254 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 4.1e-07 59.3 144 36.8
MELO3C021319.2 Cucumis melo HOM05D003304 ORTHO05D003762 4.1e-07 59.3 88 47.7
Thhalv10021990m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 4.1e-07 59.3 181 34.3
A05p41260 Brassica napus HOM05D003304 ORTHO05D003762 5.3e-07 58.9 43 65.1
BraA05t22849Z Brassica rapa HOM05D003304 ORTHO05D003762 5.3e-07 58.9 43 65.1
Psat4g026560 Pisum sativum HOM05D003304 ORTHO05D003762 5.3e-07 58.9 49 61.2
Sed0002765 Sechium edule HOM05D003304 ORTHO05D003762 5.3e-07 58.9 58 55.2
EL10Ac3g06624 Beta vulgaris HOM05D003304 ORTHO05D003762 7.0e-07 58.5 73 52.1
BNapus_Darmor_BZH_scaffold_117p00150 Brassica napus HOM05D003304 ORTHO05D003762 7.0e-07 58.5 172 34.9
AT3G06868 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 9.1e-07 58.2 79 48.1
Sp2g19450 Schrenkiella parvula HOM05D003304 ORTHO05D003762 9.1e-07 58.2 78 46.2
MD13G1166900 Malus domestica HOM05D003304 ORTHO05D003762 1.2e-06 57.8 49 57.1
MD16G1166700 Malus domestica HOM05D003304 ORTHO05D003762 1.2e-06 57.8 111 37.8
SHI00254 Sapria himalayana HOM05D003304 ORTHO05D003762 1.2e-06 57.8 90 42.2
TPR.G31283 Trifolium pratense HOM05D003304 ORTHO05D003762 1.2e-06 57.8 56 58.9
Aa31sc105G60 Aethionema arabicum HOM05D003304 ORTHO05D003762 1.5e-06 57.4 54 57.4
AL3G18000 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 1.5e-06 57.4 78 51.3
BolC5t34702H Brassica oleracea HOM05D003304 ORTHO05D003762 1.5e-06 57.4 51 58.8
Psat1g155200 Pisum sativum HOM05D003304 ORTHO05D003762 1.5e-06 57.4 55 52.7
THA.LOC104827338 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 2.6e-06 56.6 167 34.1
MELO3C024134.2 Cucumis melo HOM05D003304 ORTHO05D003762 3.5e-06 56.2 42 71.4
Lj6g0014556 Lotus japonicus HOM05D003304 ORTHO05D003762 3.5e-06 56.2 40 67.5
Sp3g05830 Schrenkiella parvula HOM05D003304 ORTHO05D003762 3.5e-06 56.2 71 50.7
C05p60480 Brassica napus HOM05D003304 ORTHO05D003762 4.5e-06 55.8 51 56.9
PGR004G2799 Punica granatum HOM05D003304 ORTHO05D003762 4.5e-06 55.8 78 47.4
Atru.chr6.1997 Acer truncatum HOM05D003304 ORTHO05D003762 5.9e-06 55.5 48 60.4
BcaC09g47926 Brassica carinata HOM05D003304 ORTHO05D003762 5.9e-06 55.5 82 51.2
Carub.0003s0640 Capsella rubella HOM05D003304 ORTHO05D003762 5.9e-06 55.5 78 46.2
ClCG06G005040 Citrullus lanatus HOM05D003304 ORTHO05D003762 5.9e-06 55.5 143 34.3
MELO3C006676.2 Cucumis melo HOM05D003304 ORTHO05D003762 5.9e-06 55.5 61 52.5
CARHR182640 Cardamine hirsuta HOM05D003304 ORTHO05D003762 7.7e-06 55.1 49 59.2
Ca_01922_v3 Cicer arietinum L. HOM05D003304 ORTHO05D003762 7.7e-06 55.1 44 59.1
CsaV3_3G014790 Cucumis sativus L. HOM05D003304 ORTHO05D003762 7.7e-06 55.1 41 70.7
unitig_749.g13390 Utricularia gibba HOM05D003304 ORTHO05D003762 7.7e-06 55.1 47 61.7


User provided reference genes

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