Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-145 518.8 264 100.0
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-125 451.8 265 89.1
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.3e-97 358.2 251 75.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.6e-96 356.7 251 74.1
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.1e-93 346.3 235 77.0
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.0e-92 344.0 235 75.7
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.9e-87 325.9 251 70.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.5e-86 323.6 236 72.9
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.5e-86 322.8 251 69.3
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.0e-83 313.2 252 68.7
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.5e-78 296.2 232 66.4
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.6e-77 293.5 241 64.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 6.8e-76 288.1 278 59.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.2e-74 283.1 241 63.9
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.9e-74 282.7 245 60.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 6.4e-74 281.6 241 61.8
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.4e-73 280.4 242 61.6
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 3.2e-73 279.3 236 62.7
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.1e-73 278.9 219 64.8
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 5.4e-73 278.5 196 70.9
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.0e-72 276.6 207 67.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.7e-72 276.2 218 65.1
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.1e-70 270.8 247 59.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.5e-70 269.6 251 59.4
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 4.3e-70 268.9 242 57.9
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.8e-69 266.2 247 58.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.8e-69 266.2 247 58.7
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 4.7e-69 265.4 196 68.4
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.7e-69 265.4 247 58.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.4e-68 263.8 241 59.3
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.4e-68 263.8 237 58.2
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.3e-68 263.1 232 60.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.3e-68 263.1 235 59.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.3e-68 263.1 201 66.7
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.0e-68 262.3 156 82.7
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.0e-68 262.3 234 59.0
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 5.2e-68 261.9 245 60.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 6.8e-68 261.5 241 57.3
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-67 260.8 237 57.8
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-67 260.0 172 76.7
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 3.4e-67 259.2 251 57.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 5.8e-67 258.5 254 56.3
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 7.5e-67 258.1 266 54.1
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.2e-66 256.5 187 71.1
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.2e-66 256.5 239 57.7
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 3.7e-66 255.8 250 59.2
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.9e-66 255.4 172 71.5
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 6.4e-66 255.0 180 71.1
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.1e-65 254.2 248 56.9
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 2.4e-65 253.1 235 58.3
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 3.2e-65 252.7 179 71.5
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 4.1e-65 252.3 237 58.2
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 5.4e-65 251.9 249 57.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.4e-65 251.9 156 77.6
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 7.0e-65 251.5 197 65.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 9.2e-65 251.1 243 53.9
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.2e-64 250.8 205 63.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.2e-64 250.8 249 53.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.2e-64 250.8 202 62.9
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-64 250.4 206 62.6
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.0e-64 250.0 238 59.2
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 4.6e-64 248.8 183 67.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 7.8e-64 248.1 245 54.3
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 7.8e-64 248.1 214 59.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 7.8e-64 248.1 249 57.0
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.8e-64 248.1 233 59.7
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.0e-63 247.7 249 51.8
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.3e-63 247.3 152 77.6
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.7e-63 246.9 232 58.6
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.0e-63 246.1 178 68.0
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 3.9e-63 245.7 186 67.7
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 5.0e-63 245.4 178 66.3
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 5.0e-63 245.4 241 54.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.0e-63 245.4 238 58.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 8.6e-63 244.6 240 57.9
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 8.6e-63 244.6 183 66.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 8.6e-63 244.6 183 66.7
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 8.6e-63 244.6 259 55.2
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.1e-62 244.2 241 53.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.5e-62 243.0 242 51.2
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.3e-62 242.7 201 64.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.3e-62 242.7 205 63.4
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 4.3e-62 242.3 182 66.5
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.3e-62 242.3 251 51.4
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.6e-62 241.9 152 75.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 9.5e-62 241.1 240 53.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.2e-61 240.7 244 52.9
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.2e-61 240.7 244 52.9
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.2e-61 240.7 186 65.6
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.2e-61 240.7 186 65.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-61 240.7 236 54.2
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.6e-61 240.4 186 65.6
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-61 240.4 241 49.8
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.6e-61 240.4 240 55.8
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.6e-61 240.4 238 56.7
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.8e-61 239.6 147 76.9
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.8e-61 239.6 238 52.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.8e-61 239.6 224 58.9
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 3.6e-61 239.2 281 50.2
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 8.1e-61 238.0 186 61.8
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.1e-60 237.7 234 55.1
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.1e-60 237.7 182 63.7
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.8e-60 236.9 239 50.2
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 3.1e-60 236.1 182 65.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 6.8e-60 235.0 246 53.3
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.2e-59 234.2 242 52.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.5e-59 233.8 243 49.8
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.5e-59 233.8 149 73.2
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.0e-59 233.4 237 50.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.8e-59 231.9 246 50.8
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 7.5e-59 231.5 195 61.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 7.5e-59 231.5 197 59.9
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.9e-58 229.6 238 50.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.7e-58 229.2 148 73.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.1e-57 227.6 233 54.5
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.1e-57 227.6 148 72.3
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.4e-57 227.3 193 59.6
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.1e-56 223.4 238 51.3
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.0e-55 221.1 245 49.0
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.1e-54 217.6 243 51.4
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 4.3e-54 215.7 161 68.3
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.2e-51 207.6 148 65.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 7.6e-51 204.9 128 73.4
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.4e-50 201.4 195 53.8
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.7e-48 196.4 187 54.0
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.3e-47 193.4 160 63.1
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 7.3e-46 188.3 165 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.2e-45 187.6 142 59.2
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.2e-45 187.6 202 55.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.5e-43 180.6 139 55.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.5e-43 180.6 197 54.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 3.8e-42 176.0 190 52.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.4e-41 172.2 215 45.6
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.1e-41 171.8 179 52.0
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 9.3e-41 171.4 252 44.4
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.3e-39 167.5 155 58.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 8.7e-39 164.9 195 49.7
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 6.9e-36 155.2 233 44.2
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 9.0e-36 154.8 146 57.5
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 4.9e-34 149.1 127 59.8
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.7e-32 143.3 144 54.9
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 3.0e-31 139.8 166 53.0
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-27 127.9 154 51.9
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.0e-23 114.8 163 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.5e-22 110.2 79 60.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.1e-20 103.2 146 38.4
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 4.9e-18 95.9 130 40.0
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.4e-17 94.4 173 33.5
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 5.7e-14 82.4 146 32.2
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.4e-12 77.8 154 31.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.1e-12 76.6 91 47.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.1e-12 76.3 122 32.8
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.4e-11 73.2 163 30.1
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.3e-10 71.2 126 27.8
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.5e-10 68.6 83 51.8
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 8.5e-10 68.6 83 47.0


User provided reference genes

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