Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001216g0070 Nicotiana tabacum HOM05D003488 ORTHO05D285644 6.3e-48 193.7 95 100.0
Peaxi162Scf00003g00057 Petunia axillaris HOM05D003488 ORTHO05D004214 2.0e-14 82.4 63 66.7
Nitab4.5_0013628g0020 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.7e-13 79.3 63 63.5
CSS0019661 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 1.2e-11 73.2 63 55.6
Nitab4.5_0000755g0230 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-11 73.2 55 67.3
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 1.6e-11 72.8 63 55.6
Sopen11g027050 Solanum pennellii HOM05D003488 ORTHO05D004214 2.1e-11 72.4 63 57.1
PSO339G0354 Papaver somniferum HOM05D003488 ORTHO05D004214 3.6e-11 71.6 63 54.0
Peaxi162Scf00290g00084 Petunia axillaris HOM05D003488 ORTHO05D004214 4.7e-11 71.2 63 52.4
Aqoxy4G02784 Aquilegia oxysepala HOM05D003488 ORTHO05D004214 6.1e-11 70.9 63 50.8
Phvul.011G093800 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 8.0e-11 70.5 63 52.4
Potri.009G164200 Populus trichocarpa HOM05D003488 ORTHO05D004214 1.0e-10 70.1 63 54.0
Cpa.g.sc1448.1 Carica papaya HOM05D003488 ORTHO05D004214 2.3e-10 68.9 63 52.4
Glyma.12G088900 Glycine max HOM05D003488 ORTHO05D004214 2.3e-10 68.9 63 52.4
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 2.3e-10 68.9 62 50.0
VMungo1127G1058 Vigna mungo HOM05D003488 ORTHO05D004214 2.3e-10 68.9 63 54.0
Phvul.011G094000 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 3.0e-10 68.6 59 52.5
Solyc09g009470.1 Solanum lycopersicum HOM05D003488 ORTHO05D004214 3.0e-10 68.6 63 50.8
PGSC0003DMG403002701 Solanum tuberosum HOM05D003488 ORTHO05D004214 3.0e-10 68.6 63 50.8
Glyma.11G183600 Glycine max HOM05D003488 ORTHO05D004214 4.0e-10 68.2 61 52.5
CANSAT54G1372 Cannabis sativa HOM05D003488 ORTHO05D004214 5.2e-10 67.8 63 50.8
Dinv31679 Davidia involucrata HOM05D003488 ORTHO05D004214 5.2e-10 67.8 63 52.4
CAN.G397.11 Capsicum annuum HOM05D003488 ORTHO05D004214 6.8e-10 67.4 63 50.8
PSO384G1288 Papaver somniferum HOM05D003488 ORTHO05D004214 6.8e-10 67.4 63 52.4
Sopen09g004200 Solanum pennellii HOM05D003488 ORTHO05D004214 6.8e-10 67.4 63 50.8
Lsat_1_v5_gn_8_76881 Lactuca sativa HOM05D003488 ORTHO05D004214 8.8e-10 67.0 92 41.3
Nitab4.5_0001725g0160 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-09 66.6 63 50.8
TAR633G2222 Trochodendron aralioides HOM05D003488 ORTHO05D004214 1.2e-09 66.6 63 49.2
Dinv21216 Davidia involucrata HOM05D003488 ORTHO05D004214 1.5e-09 66.2 63 50.8
ECA236G1444 Erigeron canadensis HOM05D003488 ORTHO05D004214 1.5e-09 66.2 92 40.2
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 1.5e-09 66.2 63 52.4
Nitab4.5_0000132g0010 Nicotiana tabacum HOM05D003488 ORTHO05D004214 2.0e-09 65.9 61 49.2
MBI17_g08366_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 2.6e-09 65.5 59 50.8
Solyc10g083480.2 Solanum lycopersicum HOM05D003488 ORTHO05D004214 2.6e-09 65.5 63 49.2
Sopen10g032950 Solanum pennellii HOM05D003488 ORTHO05D004214 2.6e-09 65.5 63 49.2
PGSC0003DMG400028258 Solanum tuberosum HOM05D003488 ORTHO05D004214 2.6e-09 65.5 63 49.2
SGA_v2.0_scaffold75G24751 Striga asiatica HOM05D003488 ORTHO05D004214 2.6e-09 65.5 63 49.2
Nn2g14149 Nelumbo nucifera HOM05D003488 ORTHO05D004214 3.4e-09 65.1 63 47.6
Nn6g34912 Nelumbo nucifera HOM05D003488 ORTHO05D004214 3.4e-09 65.1 63 47.6
Sabra04G0137300 Salix brachista HOM05D003488 ORTHO05D004214 3.4e-09 65.1 61 49.2
CSS0032778 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 4.4e-09 64.7 63 47.6
ATR0776G025 Amborella trichopoda HOM05D003488 ORTHO05D004214 5.7e-09 64.3 63 47.6
Dinv29477 Davidia involucrata HOM05D003488 ORTHO05D004214 5.7e-09 64.3 84 40.5
Duzib168G1363 Durio zibethinus HOM05D003488 ORTHO05D004214 5.7e-09 64.3 61 50.8
COL.COLO4_19885 Corchorus olitorius HOM05D003488 ORTHO05D004214 7.5e-09 63.9 63 49.2
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 7.5e-09 63.9 63 49.2
Nitab4.5_0005483g0030 Nicotiana tabacum HOM05D003488 ORTHO05D004214 7.5e-09 63.9 63 49.2
Atru.chr3.3255 Acer truncatum HOM05D003488 ORTHO05D004214 9.8e-09 63.5 63 47.6
CiPaw.13G136300 Carya illinoinensis HOM05D003488 ORTHO05D004214 9.8e-09 63.5 101 33.7
DCAR_013382 Daucus carota HOM05D003488 ORTHO05D004214 9.8e-09 63.5 63 46.0
Lalb_Chr01g0004851 Lupinus albus HOM05D003488 ORTHO05D004214 9.8e-09 63.5 59 50.8
Rhsim01G0205200 Rhododendron simsii HOM05D003488 ORTHO05D004214 9.8e-09 63.5 63 50.8
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 1.3e-08 63.2 62 48.4
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 1.3e-08 63.2 62 48.4
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 1.3e-08 63.2 63 50.8
Gohir.A09G095500 Gossypium hirsutum HOM05D003488 ORTHO05D004214 1.7e-08 62.8 63 49.2
THA.LOC104800533 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 1.7e-08 62.8 63 50.8
GSVIVG01036133001 Vitis vinifera HOM05D003488 ORTHO05D004214 1.7e-08 62.8 63 50.8
Ciclev10028521m.g Citrus clementina HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 49.2
Migut.J01046 Erythranthe guttata HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 46.0
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 46.0
FAN05G0207 Fragaria x ananassa HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 46.0
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 46.0
FAN09G1414 Fragaria x ananassa HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 46.0
Lj3A997T49 Lonicera japonica HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 47.6
Manes.04G004000 Manihot esculenta HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 47.6
Potri.004G203300 Populus trichocarpa HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 50.8
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 50.8
RcHm_v2.0_Chr3g0473131 Rosa chinensis HOM05D003488 ORTHO05D004214 2.2e-08 62.4 63 46.0
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 2.8e-08 62.0 63 49.2
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 3.7e-08 61.6 63 47.6
CAN.G1039.14 Capsicum annuum HOM05D003488 ORTHO05D004214 4.9e-08 61.2 61 45.9
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 4.9e-08 61.2 61 49.2
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 4.9e-08 61.2 63 46.0
Nitab4.5_0000963g0070 Nicotiana tabacum HOM05D003488 ORTHO05D004214 4.9e-08 61.2 61 47.5
TWI31G0838 Tripterygium wilfordii HOM05D003488 ORTHO05D004214 4.9e-08 61.2 63 46.0
MSTRG.26643 Avicennia marina HOM05D003488 ORTHO05D004214 6.3e-08 60.8 63 42.9
Oeu009221.1 Olea europaea HOM05D003488 ORTHO05D004214 6.3e-08 60.8 63 44.4
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 8.3e-08 60.5 63 47.6
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 8.3e-08 60.5 63 44.4
Thecc.09G284200 Theobroma cacao HOM05D003488 ORTHO05D004214 8.3e-08 60.5 63 47.6
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 1.1e-07 60.1 63 46.0
SGA_v2.0_scaffold13G06728 Striga asiatica HOM05D003488 ORTHO05D004214 1.1e-07 60.1 63 47.6
AL2G25690 Arabidopsis lyrata HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 47.6
AT1G67190 Arabidopsis thaliana HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 47.6
Carub.0002s1346 Capsella rubella HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 47.6
CARHR059640 Cardamine hirsuta HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 47.6
Haze_19602 Corylus avellana HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 47.6
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 47.6
Hma1.2p1_0084F.1_g043700 Hydrangea macrophylla HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 46.0
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 1.4e-07 59.7 63 44.4
SEGI_17169 Sequoiadendron giganteum HOM05D003488 ORTHO05D022332 1.4e-07 59.7 63 42.9
BcaB03g15209 Brassica carinata HOM05D003488 ORTHO05D004214 1.8e-07 59.3 63 47.6
BcaC08g46148 Brassica carinata HOM05D003488 ORTHO05D004214 1.8e-07 59.3 63 47.6
C06p43110 Brassica napus HOM05D003488 ORTHO05D004214 1.8e-07 59.3 63 47.6
BolC6t39128H Brassica oleracea HOM05D003488 ORTHO05D004214 1.8e-07 59.3 63 47.6
BraA07t31008Z Brassica rapa HOM05D003488 ORTHO05D004214 1.8e-07 59.3 63 47.6
arahy.Tifrunner.gnm1.ann1.D6PK9F Arachis hypogaea HOM05D003488 ORTHO05D004214 2.4e-07 58.9 53 50.9
Lsat_1_v5_gn_6_38721 Lactuca sativa HOM05D003488 ORTHO05D004214 3.1e-07 58.5 61 47.5
Peaxi162Scf00163g00052 Petunia axillaris HOM05D003488 ORTHO05D004214 3.1e-07 58.5 61 42.6
Manes.11G161600 Manihot esculenta HOM05D003488 ORTHO05D004214 4.1e-07 58.2 59 44.1
Nitab4.5_0000202g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 4.1e-07 58.2 61 44.3
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 5.4e-07 57.8 56 46.4
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 5.4e-07 57.8 61 45.9
Rhsim03G0075900 Rhododendron simsii HOM05D003488 ORTHO05D004214 7.0e-07 57.4 63 44.4
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 7.0e-07 57.4 63 44.4
TPR.G21934 Trifolium pratense HOM05D003488 ORTHO05D004214 7.0e-07 57.4 63 42.9
A07p33820 Brassica napus HOM05D003488 ORTHO05D004214 9.2e-07 57.0 63 46.0
Cc06_g05690 Coffea canephora HOM05D003488 ORTHO05D004214 9.2e-07 57.0 63 41.3
Os01g0859600 Oryza sativa ssp. japonica HOM05D003488 ORTHO05D004214 9.2e-07 57.0 61 47.5
CiPaw.13G136100 Carya illinoinensis HOM05D003488 ORTHO05D004214 1.2e-06 56.6 63 46.0
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 1.2e-06 56.6 63 46.0
Prupe.6G129400 Prunus persica HOM05D003488 ORTHO05D004214 1.2e-06 56.6 63 47.6
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 1.6e-06 56.2 63 42.9
MELO3C024542.2 Cucumis melo HOM05D003488 ORTHO05D004214 2.0e-06 55.8 63 44.4
CsaV3_6G040650 Cucumis sativus L. HOM05D003488 ORTHO05D004214 2.0e-06 55.8 63 44.4
Psat0s2993g0200 Pisum sativum HOM05D003488 ORTHO05D004214 2.0e-06 55.8 63 42.9
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 2.7e-06 55.5 63 42.9
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 2.7e-06 55.5 63 42.9
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 2.7e-06 55.5 63 42.9
Psat3g033640 Pisum sativum HOM05D003488 ORTHO05D004214 2.7e-06 55.5 63 44.4
CDE08G1419 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 4.5e-06 54.7 63 41.3
CsaV3_3G037230 Cucumis sativus L. HOM05D003488 ORTHO05D022332 4.5e-06 54.7 63 39.7
Medtr1g060040 Medicago truncatula HOM05D003488 ORTHO05D004214 4.5e-06 54.7 63 42.9
TPR.G17200 Trifolium pratense HOM05D003488 ORTHO05D004214 5.9e-06 54.3 63 44.4
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 7.8e-06 53.9 61 45.9


User provided reference genes

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