Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001211g0270 Nicotiana tabacum HOM05D001764 ORTHO05D001946 3.7e-163 578.2 295 100.0
Nitab4.5_0005900g0080 Nicotiana tabacum HOM05D001764 ORTHO05D001946 2.4e-154 548.9 286 97.2
Sopen03g034760 Solanum pennellii HOM05D001764 ORTHO05D001946 1.6e-126 456.4 290 81.4
Solyc03g115780.2 Solanum lycopersicum HOM05D001764 ORTHO05D001946 2.1e-126 456.1 290 81.0
CAN.G479.64 Capsicum annuum HOM05D001764 ORTHO05D001946 7.7e-121 437.6 286 79.4
Peaxi162Scf00274g00352 Petunia axillaris HOM05D001764 ORTHO05D001946 2.0e-108 396.4 312 67.3
Nitab4.5_0001195g0030 Nicotiana tabacum HOM05D001764 ORTHO05D001946 4.4e-100 368.6 321 61.7
PGSC0003DMG400021936 Solanum tuberosum HOM05D001764 ORTHO05D001946 4.9e-99 365.2 322 63.0
Nitab4.5_0001997g0090 Nicotiana tabacum HOM05D001764 ORTHO05D001946 6.4e-99 364.8 314 62.4
Dinv10651 Davidia involucrata HOM05D001764 ORTHO05D001946 1.1e-98 364.0 325 62.2
Peaxi162Scf00106g00421 Petunia axillaris HOM05D001764 ORTHO05D001946 1.4e-98 363.6 321 61.7
Sopen12g016340 Solanum pennellii HOM05D001764 ORTHO05D001946 6.0e-97 358.2 322 61.2
Solyc12g036220.3 Solanum lycopersicum HOM05D001764 ORTHO05D001946 1.3e-96 357.1 322 61.2
CAN.G847.2 Capsicum annuum HOM05D001764 ORTHO05D001946 4.3e-95 352.1 321 60.1
Cc04_g15180 Coffea canephora HOM05D001764 ORTHO05D001946 2.1e-94 349.7 325 57.5
PGSC0003DMG400019519 Solanum tuberosum HOM05D001764 ORTHO05D001946 1.7e-88 330.1 213 79.8
DCAR_016575 Daucus carota HOM05D001764 ORTHO05D001946 3.1e-85 319.3 325 53.5
Oeu052451.1 Olea europaea HOM05D001764 ORTHO05D001946 5.2e-85 318.5 324 54.9
Actinidia37612 Actinidia chinensis HOM05D001764 ORTHO05D001946 1.5e-84 317.0 326 55.2
TAR374G0441 Trochodendron aralioides HOM05D001764 ORTHO05D001946 9.2e-82 307.8 307 55.0
MSTRG.23004 Avicennia marina HOM05D001764 ORTHO05D001946 3.5e-81 305.8 326 54.6
Rhsim08G0152300 Rhododendron simsii HOM05D001764 ORTHO05D001946 1.5e-79 300.4 314 53.5
HanXRQChr05g0155001 Helianthus annuus HOM05D001764 ORTHO05D001946 5.6e-79 298.5 314 51.3
TWI81G0186 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 2.8e-78 296.2 329 49.5
CiPaw.11G047000 Carya illinoinensis HOM05D001764 ORTHO05D001946 3.6e-78 295.8 320 53.4
ECA246G0801 Erigeron canadensis HOM05D001764 ORTHO05D001946 8.1e-78 294.7 317 52.7
QL10p017630 Quercus lobata HOM05D001764 ORTHO05D001946 1.8e-77 293.5 318 51.3
Lj5A108T58 Lonicera japonica HOM05D001764 ORTHO05D001946 5.3e-77 292.0 305 54.4
Lj9A466T76 Lonicera japonica HOM05D001764 ORTHO05D001946 6.9e-77 291.6 325 51.1
vmacro17569 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 9.0e-77 291.2 316 51.3
HanXRQChr08g0236671 Helianthus annuus HOM05D001764 ORTHO05D001946 1.5e-76 290.4 304 53.9
SGA_v2.0_scaffold313G48336 Striga asiatica HOM05D001764 ORTHO05D001946 2.6e-76 289.7 301 55.5
Lsat_1_v5_gn_5_21501 Lactuca sativa HOM05D001764 ORTHO05D001946 3.4e-76 289.3 290 54.1
Migut.I00208 Erythranthe guttata HOM05D001764 ORTHO05D001946 2.9e-75 286.2 308 53.2
Prupe.5G197500 Prunus persica HOM05D001764 ORTHO05D001946 1.4e-74 283.9 331 48.6
Ciclev10019755m.g Citrus clementina HOM05D001764 ORTHO05D001946 2.4e-74 283.1 329 49.8
Lalb_Chr13g0303091 Lupinus albus HOM05D001764 ORTHO05D001946 2.4e-74 283.1 310 51.6
Atru.chr9.148 Acer truncatum HOM05D001764 ORTHO05D001946 3.5e-73 279.3 329 49.2
Cfa018913 Carpinus fangiana HOM05D001764 ORTHO05D001946 2.3e-72 276.6 293 53.9
CiPaw.12G011800 Carya illinoinensis HOM05D001764 ORTHO05D001946 8.7e-72 274.6 320 50.0
Glyma.05G025100 Glycine max HOM05D001764 ORTHO05D001946 1.1e-71 274.2 319 50.2
FvH4_5g14590 Fragaria vesca HOM05D001764 ORTHO05D001946 1.5e-71 273.9 316 50.0
FAN18G3859 Fragaria x ananassa HOM05D001764 ORTHO05D001946 1.5e-71 273.9 316 50.0
Lj5A108T59 Lonicera japonica HOM05D001764 ORTHO05D001946 1.5e-71 273.9 307 49.2
Medtr4g108870 Medicago truncatula HOM05D001764 ORTHO05D001946 5.6e-71 271.9 307 50.5
MD14G1204300 Malus domestica HOM05D001764 ORTHO05D001946 1.6e-70 270.4 304 49.0
Lj4g0015220 Lotus japonicus HOM05D001764 ORTHO05D001946 2.1e-70 270.0 288 52.4
MD14G1204400 Malus domestica HOM05D001764 ORTHO05D001946 2.1e-70 270.0 325 47.1
MD06G1197200 Malus domestica HOM05D001764 ORTHO05D001946 4.8e-70 268.9 325 48.9
TPR.G9268 Trifolium pratense HOM05D001764 ORTHO05D001946 1.1e-69 267.7 317 47.6
unitig_62.g23551 Utricularia gibba HOM05D001764 ORTHO05D001946 2.4e-69 266.5 326 46.3
RcHm_v2.0_Chr7g0181981 Rosa chinensis HOM05D001764 ORTHO05D001946 3.1e-69 266.2 315 48.3
Eucgr.B00534 Eucalyptus grandis HOM05D001764 ORTHO05D001946 4.0e-69 265.8 326 46.9
EL10Ac5g11062 Beta vulgaris HOM05D001764 ORTHO05D001946 6.9e-69 265.0 311 47.6
Manes.14G081400 Manihot esculenta HOM05D001764 ORTHO05D001946 6.9e-69 265.0 317 44.8
AUR62021642 Chenopodium quinoa HOM05D001764 ORTHO05D001946 9.0e-69 264.6 309 47.9
Nn3g17322 Nelumbo nucifera HOM05D001764 ORTHO05D001946 9.0e-69 264.6 342 47.1
Phvul.003G188500 Phaseolus vulgaris HOM05D001764 ORTHO05D001946 9.0e-69 264.6 319 48.3
Psat4g049880 Pisum sativum HOM05D001764 ORTHO05D001946 1.5e-68 263.8 309 46.9
arahy.Tifrunner.gnm1.ann1.W39VMW Arachis hypogaea HOM05D001764 ORTHO05D001946 2.0e-68 263.5 317 49.2
arahy.Tifrunner.gnm1.ann1.YU35ML Arachis hypogaea HOM05D001764 ORTHO05D001946 2.0e-68 263.5 317 49.2
Sed0016998 Sechium edule HOM05D001764 ORTHO05D001946 5.8e-68 261.9 324 46.3
TPR.G35116 Trifolium pratense HOM05D001764 ORTHO05D001946 9.9e-68 261.2 314 46.5
CANSAT78G1062 Cannabis sativa HOM05D001764 ORTHO05D001946 1.7e-67 260.4 316 47.5
Manes.06G090000 Manihot esculenta HOM05D001764 ORTHO05D001946 1.7e-67 260.4 313 45.4
Sabra15G0087000 Salix brachista HOM05D001764 ORTHO05D001946 2.2e-67 260.0 323 44.3
Cpa.g.sc111.56 Carica papaya HOM05D001764 ORTHO05D001946 6.4e-67 258.5 323 45.8
Lalb_Chr07g0178161 Lupinus albus HOM05D001764 ORTHO05D001946 6.4e-67 258.5 312 48.7
Hund02627 Selenicereus undatus HOM05D001764 ORTHO05D001946 8.4e-67 258.1 306 48.7
RcHm_v2.0_Chr7g0181951 Rosa chinensis HOM05D001764 ORTHO05D001946 1.1e-66 257.7 314 47.1
SalBow5G2556 Salvia bowleyana HOM05D001764 ORTHO05D001946 1.1e-66 257.7 327 49.8
Sc04g0002830 Simmondsia chinensis HOM05D001764 ORTHO05D001946 1.1e-66 257.7 309 48.2
Nn4g23270 Nelumbo nucifera HOM05D001764 ORTHO05D001946 1.4e-66 257.3 343 46.9
Glyma.17G102100 Glycine max HOM05D001764 ORTHO05D001946 3.2e-66 256.1 318 46.9
CSS0015633 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 7.1e-66 255.0 195 62.6
Thecc.03G093600 Theobroma cacao HOM05D001764 ORTHO05D001946 7.1e-66 255.0 329 45.6
AUR62008448 Chenopodium quinoa HOM05D001764 ORTHO05D001946 1.6e-65 253.8 335 43.9
VMungo1215G2955 Vigna mungo HOM05D001764 ORTHO05D001946 1.6e-65 253.8 340 46.5
Ca_21809_v3 Cicer arietinum L. HOM05D001764 ORTHO05D001946 3.5e-65 252.7 303 48.2
COL.COLO4_36937 Corchorus olitorius HOM05D001764 ORTHO05D001946 3.5e-65 252.7 329 44.1
GSVIVG01007971001 Vitis vinifera HOM05D001764 ORTHO05D001946 1.8e-64 250.4 305 48.5
MELO3C017188.2 Cucumis melo HOM05D001764 ORTHO05D001946 6.7e-64 248.4 325 44.0
ClCG06G016030 Citrullus lanatus HOM05D001764 ORTHO05D001946 1.1e-63 247.7 320 44.7
QL93p0356_0066 Quercus lobata HOM05D001764 ORTHO05D001946 2.5e-63 246.5 319 45.5
PSO478G1026 Papaver somniferum HOM05D001764 ORTHO05D001946 5.6e-63 245.4 311 46.6
CsaV3_1G002520 Cucumis sativus L. HOM05D001764 ORTHO05D001946 1.3e-62 244.2 322 44.4
Potri.015G062000 Populus trichocarpa HOM05D001764 ORTHO05D001946 1.3e-62 244.2 326 44.2
Aqoxy3G00479 Aquilegia oxysepala HOM05D001764 ORTHO05D001946 1.6e-62 243.8 303 47.9
Duzib205G0803 Durio zibethinus HOM05D001764 ORTHO05D001946 1.6e-62 243.8 326 45.7
Actinidia04870 Actinidia chinensis HOM05D001764 ORTHO05D001946 2.1e-62 243.4 202 60.9
TPR.G39785 Trifolium pratense HOM05D001764 ORTHO05D001946 1.8e-61 240.4 317 46.1
Ah.02g113720 Amaranthus hybridus HOM05D001764 ORTHO05D001946 5.3e-61 238.8 305 43.9
Ciclev10019899m.g Citrus clementina HOM05D001764 ORTHO05D001946 4.5e-60 235.7 317 45.4
QL10p017615 Quercus lobata HOM05D001764 ORTHO05D001946 8.4e-59 231.5 252 50.8
Duzib068G0120 Durio zibethinus HOM05D001764 ORTHO05D001946 1.6e-57 227.3 327 41.9
Thhalv10013435m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 2.1e-57 226.9 302 45.4
FAN13G3320 Fragaria x ananassa HOM05D001764 ORTHO05D003857 2.1e-57 226.9 303 45.9
Dinv38741 Davidia involucrata HOM05D001764 ORTHO05D001946 5.1e-56 222.2 249 51.4
ATR0564G211 Amborella trichopoda HOM05D001764 ORTHO05D001946 1.1e-55 221.1 329 42.2
MBI02_g14225_MAGBIO Magnolia biondii HOM05D001764 ORTHO05D001946 1.5e-55 220.7 315 42.2
THA.LOC104818322 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 4.3e-55 219.2 300 43.3
TWI60G1593 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 1.3e-54 217.6 190 54.7
A10p29410 Brassica napus HOM05D001764 ORTHO05D001946 8.2e-54 214.9 296 42.9
TAR217G0002 Trochodendron aralioides HOM05D001764 ORTHO05D001946 8.2e-54 214.9 316 45.6
Gorai.008G195300 Gossypium raimondii HOM05D001764 ORTHO05D001946 1.4e-53 214.2 322 41.0
Aa31LG3G18730 Aethionema arabicum HOM05D001764 ORTHO05D001946 5.3e-53 212.2 295 42.4
AL6G18080 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 5.3e-53 212.2 295 44.1
C06p48550 Brassica napus HOM05D001764 ORTHO05D001946 6.9e-53 211.8 298 41.3
Gohir.A11G031900 Gossypium hirsutum HOM05D001764 ORTHO05D001946 6.9e-53 211.8 324 38.3
SGA_v2.0_scaffold25G10935 Striga asiatica HOM05D001764 ORTHO05D001946 1.5e-52 210.7 261 47.5
Gohir.D12G182000 Gossypium hirsutum HOM05D001764 ORTHO05D001946 2.0e-52 210.3 322 40.4
Prupe.5G197700 Prunus persica HOM05D001764 ORTHO05D001946 2.0e-52 210.3 291 43.3
AT5G07710 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 2.6e-52 209.9 295 44.1
Sp6g35190 Schrenkiella parvula HOM05D001764 ORTHO05D001946 2.6e-52 209.9 296 42.6
BraA10t44985Z Brassica rapa HOM05D001764 ORTHO05D001946 3.4e-52 209.5 299 43.1
Gohir.A12G179400 Gossypium hirsutum HOM05D001764 ORTHO05D001946 3.4e-52 209.5 322 40.1
vmacro16525 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 4.5e-52 209.1 238 50.4
Lsat_1_v5_gn_4_109301 Lactuca sativa HOM05D001764 ORTHO05D001946 7.6e-52 208.4 212 53.3
TAR217G0003 Trochodendron aralioides HOM05D001764 ORTHO05D001946 2.2e-51 206.8 310 44.5
CARHR205440 Cardamine hirsuta HOM05D001764 ORTHO05D001946 8.4e-51 204.9 296 42.2
Aa31LG11G2030 Aethionema arabicum HOM05D001764 ORTHO05D001946 1.4e-50 204.1 291 42.3
BcaC06g32411 Brassica carinata HOM05D001764 ORTHO05D001946 1.9e-50 203.8 297 41.8
C09p69790 Brassica napus HOM05D001764 ORTHO05D001946 1.9e-50 203.8 297 41.8
BolC9t59723H Brassica oleracea HOM05D001764 ORTHO05D001946 1.9e-50 203.8 297 41.8
Thhalv10018430m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 3.2e-50 203.0 316 38.9
Carub.0006s0667 Capsella rubella HOM05D001764 ORTHO05D001946 5.5e-50 202.2 295 43.7
Rhsim12G0154300 Rhododendron simsii HOM05D001764 ORTHO05D001946 5.5e-50 202.2 237 51.1
AL8G38060 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 9.3e-50 201.4 301 41.9
THA.LOC104812092 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 1.6e-49 200.7 317 39.4
BcaC06g32500 Brassica carinata HOM05D001764 ORTHO05D001946 2.7e-49 199.9 297 42.1
BolC6t39884H Brassica oleracea HOM05D001764 ORTHO05D001946 2.7e-49 199.9 300 40.7
Os10g0407500 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 2.7e-49 199.9 291 41.9
Sabra15G0087100 Salix brachista HOM05D001764 ORTHO05D001946 2.7e-49 199.9 190 50.5
Cfa018912 Carpinus fangiana HOM05D001764 ORTHO05D001946 4.6e-49 199.1 242 49.2
AT1G74390 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 6.1e-49 198.7 316 38.0
Actinidia19021 Actinidia chinensis HOM05D001764 ORTHO05D001946 3.9e-48 196.1 251 47.4
AL2G34240 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 3.9e-48 196.1 317 36.9
TAR217G0001 Trochodendron aralioides HOM05D001764 ORTHO05D001946 8.7e-48 194.9 297 44.1
Sp2g24600 Schrenkiella parvula HOM05D001764 ORTHO05D001946 1.1e-47 194.5 299 38.8
Zm00001eb223190 Zea mays HOM05D001764 ORTHO05D001946 1.5e-47 194.1 273 41.8
Sp5g29550 Schrenkiella parvula HOM05D001764 ORTHO05D001946 1.9e-47 193.7 316 38.0
A07p40200 Brassica napus HOM05D001764 ORTHO05D001946 3.3e-47 193.0 323 40.2
Thhalv10004100m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 3.3e-47 193.0 297 36.0
Carub.0002s2116 Capsella rubella HOM05D001764 ORTHO05D001946 9.7e-47 191.4 315 36.8
TAR217G0004 Trochodendron aralioides HOM05D001764 ORTHO05D001946 1.6e-46 190.7 291 41.2
BraA07t31565Z Brassica rapa HOM05D001764 ORTHO05D001946 2.8e-46 189.9 322 38.2
BraA09t36380Z Brassica rapa HOM05D001764 ORTHO05D001946 2.8e-46 189.9 298 38.6
MD14G1204200 Malus domestica HOM05D001764 ORTHO05D001946 1.1e-45 188.0 291 40.9
AT5G61390 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 1.4e-45 187.6 301 39.9
Aa31LG4G4640 Aethionema arabicum HOM05D001764 ORTHO05D001946 2.4e-45 186.8 312 36.5
TAR371G1169 Trochodendron aralioides HOM05D001764 ORTHO05D001946 2.4e-45 186.8 295 41.4
C09p08180 Brassica napus HOM05D001764 ORTHO05D001946 3.4e-44 183.0 302 38.4
BolC9t53730H Brassica oleracea HOM05D001764 ORTHO05D001946 3.4e-44 183.0 302 38.4
CARHR275150 Cardamine hirsuta HOM05D001764 ORTHO05D001946 3.4e-44 183.0 299 38.8
Carub.0008s2206 Capsella rubella HOM05D001764 ORTHO05D001946 1.0e-43 181.4 296 38.2
CARHR067650 Cardamine hirsuta HOM05D001764 ORTHO05D001946 3.8e-43 179.5 316 37.0
Haze_07295 Corylus avellana HOM05D001764 ORTHO05D003857 3.8e-43 179.5 244 46.3
Gohir.D11G035332 Gossypium hirsutum HOM05D001764 ORTHO05D001946 2.7e-41 173.3 208 44.7
Ciclev10020652m.g Citrus clementina HOM05D001764 ORTHO05D001946 4.6e-41 172.6 157 56.7
Lsat_1_v5_gn_4_109181 Lactuca sativa HOM05D001764 ORTHO05D001946 1.8e-40 170.6 193 50.8
BcaC04g23453 Brassica carinata HOM05D001764 ORTHO05D001946 1.5e-39 167.5 295 35.6
CSS0023502 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 3.7e-38 162.9 225 42.7
Sed0004706 Sechium edule HOM05D001764 ORTHO05D001946 1.4e-37 161.0 249 41.8
PGR083G1358 Punica granatum HOM05D001764 ORTHO05D001946 9.1e-37 158.3 163 57.1
BcaC08g47002 Brassica carinata HOM05D001764 ORTHO05D001946 1.5e-36 157.5 307 35.8
Nitab4.5_0000488g0080 Nicotiana tabacum HOM05D001764 ORTHO05D001946 6.5e-35 152.1 192 44.3
Hund09819 Selenicereus undatus HOM05D001764 ORTHO05D001946 6.5e-35 152.1 292 36.6
Nn4g23268 Nelumbo nucifera HOM05D001764 ORTHO05D001946 1.0e-32 144.8 246 40.2
SEGI_13176 Sequoiadendron giganteum HOM05D001764 ORTHO05D001946 1.0e-32 144.8 221 38.0
Nitab4.5_0001613g0010 Nicotiana tabacum HOM05D001764 ORTHO05D001946 1.1e-31 141.4 191 44.5
HPP92_006010 Vanilla planifolia HOM05D001764 ORTHO05D001946 3.3e-31 139.8 147 47.6
AL2G17300 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 1.4e-29 134.4 234 34.6
Os10g0426300 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 1.3e-27 127.9 208 39.4
Os10g0407400 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 1.9e-26 124.0 207 37.2
PGSC0003DMG400021376 Solanum tuberosum HOM05D001764 ORTHO05D001946 2.1e-25 120.6 192 40.1
MD14G1204000 Malus domestica HOM05D001764 ORTHO05D001946 1.1e-23 114.8 114 50.9
CDE09G0781 Ceratophyllum demersum HOM05D001764 ORTHO05D001946 3.3e-23 113.2 305 31.5
Hund02628 Selenicereus undatus HOM05D001764 ORTHO05D001946 5.7e-23 112.5 188 38.3
Rhsim12G0154200 Rhododendron simsii HOM05D001764 ORTHO05D001946 2.2e-22 110.5 79 65.8
Eucgr.K01210 Eucalyptus grandis HOM05D001764 ORTHO05D001946 6.5e-19 99.0 203 36.5
Zm00001eb022860 Zea mays HOM05D001764 ORTHO05D028412 3.2e-18 96.7 207 33.8
Eucgr.K01202 Eucalyptus grandis HOM05D001764 ORTHO05D001946 1.6e-17 94.4 203 35.0
Eucgr.K01201 Eucalyptus grandis HOM05D001764 ORTHO05D001946 3.1e-13 80.1 222 32.0
Eucgr.K01204 Eucalyptus grandis HOM05D001764 ORTHO05D001946 6.1e-09 65.9 115 39.1
Haze_07296 Corylus avellana HOM05D001764 ORTHO05D001946 4.4e-07 59.7 47 63.8


User provided reference genes

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