Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.7e-121 439.5 244 100.0
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 2.0e-106 389.4 229 93.4
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 1.3e-100 370.2 248 86.3
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.6e-100 369.8 247 83.0
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 3.4e-98 362.1 244 84.8
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 8.4e-97 357.5 250 81.6
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 3.3e-93 345.5 227 80.2
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 3.1e-75 285.8 237 63.3
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 1.7e-73 280.0 240 63.3
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 5.0e-73 278.5 252 64.3
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 4.7e-71 271.9 230 61.7
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.4e-70 270.4 237 60.8
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 1.8e-70 270.0 230 63.5
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.5e-69 266.9 233 61.8
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 3.7e-68 262.3 242 63.2
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 4.8e-68 261.9 236 61.0
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.4e-67 260.4 231 60.2
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 2.4e-67 259.6 248 56.0
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 2.4e-67 259.6 229 58.1
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 3.1e-67 259.2 228 60.1
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 5.3e-67 258.5 234 59.8
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 5.3e-67 258.5 242 57.4
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 5.3e-67 258.5 224 59.8
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 7.0e-67 258.1 225 59.6
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.2e-66 257.3 248 56.9
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 2.0e-66 256.5 235 59.1
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 2.0e-66 256.5 242 58.3
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 2.0e-66 256.5 241 57.3
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 2.6e-66 256.1 240 62.9
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 4.5e-66 255.4 239 59.0
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 5.9e-66 255.0 237 56.1
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 7.7e-66 254.6 245 59.2
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.0e-65 254.2 238 60.1
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 1.0e-65 254.2 241 60.6
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.0e-65 254.2 227 60.4
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.0e-65 254.2 230 59.1
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 2.2e-65 253.1 236 55.1
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 2.9e-65 252.7 231 67.5
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 3.8e-65 252.3 236 57.2
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 6.5e-65 251.5 257 56.0
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 6.5e-65 251.5 248 55.2
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 8.5e-65 251.1 231 58.4
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 1.1e-64 250.8 240 56.2
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.1e-64 250.8 240 57.5
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.1e-64 250.8 235 57.0
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 1.4e-64 250.4 239 55.6
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.4e-64 250.4 257 56.0
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.5e-64 249.6 257 56.0
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 4.2e-64 248.8 241 54.4
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 4.2e-64 248.8 231 57.1
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 7.2e-64 248.1 245 57.6
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 7.2e-64 248.1 245 57.6
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 9.4e-64 247.7 239 56.5
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.2e-63 247.3 232 55.2
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 1.2e-63 247.3 237 57.0
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 2.1e-63 246.5 245 54.3
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 2.1e-63 246.5 239 54.8
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 2.1e-63 246.5 239 54.8
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 2.7e-63 246.1 187 65.8
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 4.7e-63 245.4 238 55.5
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 6.1e-63 245.0 250 59.6
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 1.4e-62 243.8 240 55.4
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.4e-62 243.8 234 63.7
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 1.8e-62 243.4 243 53.9
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.3e-62 243.0 240 55.8
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 2.3e-62 243.0 228 57.5
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 2.3e-62 243.0 239 54.8
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 8.8e-62 241.1 237 59.5
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 1.1e-61 240.7 237 60.8
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 2.0e-61 240.0 192 64.1
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.6e-61 239.6 257 54.5
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 3.3e-61 239.2 229 63.8
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 3.3e-61 239.2 246 55.7
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.4e-61 238.0 257 54.5
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 1.7e-60 236.9 224 55.4
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.7e-60 235.7 257 53.7
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 4.8e-60 235.3 183 64.5
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 6.3e-60 235.0 187 62.6
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.1e-59 234.2 184 64.1
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.6e-58 229.6 134 79.9
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 7.2e-56 221.5 237 53.6
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.2e-55 220.7 239 58.2
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.2e-55 220.7 236 53.0
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 5.2e-54 215.3 267 55.1
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 9.7e-53 211.1 267 54.3
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.7e-52 209.1 189 55.6
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.7e-52 209.1 219 50.2
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 4.1e-51 205.7 203 53.2
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 5.3e-51 205.3 187 64.2
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 5.9e-50 201.8 248 54.4
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 5.9e-50 201.8 236 49.2
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.2e-48 195.7 242 50.0
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 5.7e-45 185.3 237 45.6
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 7.5e-45 184.9 236 46.6
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.5e-40 170.6 228 41.2
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 7.2e-40 168.3 214 41.6
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 1.5e-37 160.6 253 42.3
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 1.6e-34 150.6 198 43.4
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 3.8e-33 146.0 238 39.5
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 1.5e-29 134.0 230 43.5
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 1.5e-29 134.0 230 43.5
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.3e-25 120.9 164 45.7
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 3.0e-25 119.8 164 45.1
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 3.0e-25 119.8 164 45.1
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 4.7e-23 112.5 144 45.1
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 4.7e-23 112.5 133 61.7
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 6.2e-23 112.1 132 55.3
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 2.3e-22 110.2 126 57.9
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 5.2e-22 109.0 143 41.3
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 5.2e-22 109.0 122 48.4
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 8.9e-22 108.2 150 50.7
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 9.8e-21 104.8 142 43.7
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 9.8e-21 104.8 140 57.1
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 1.3e-20 104.4 131 48.9
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 2.9e-20 103.2 138 52.9
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 6.4e-20 102.1 130 52.3
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.9e-19 100.5 233 33.0
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.9e-19 100.5 166 52.4
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 2.4e-19 100.1 134 43.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 2.4e-19 100.1 120 49.2
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 9.5e-16 88.2 144 39.6
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 9.9e-13 78.2 132 42.4
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 8.3e-12 75.1 65 58.5
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.2e-10 71.2 122 40.2
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 6.8e-06 55.5 28 85.7


User provided reference genes

Program Settings