Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 2993.0 1601 100.0
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 2859.7 1601 94.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 0.0e+00 2310.4 1607 77.2
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 0.0e+00 2248.8 1607 75.5
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 0.0e+00 2191.0 1610 74.6
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 0.0e+00 2108.2 1609 72.2
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 0.0e+00 1907.1 1363 75.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1189.5 1649 48.0
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1130.5 1742 44.0
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1101.3 1648 46.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.8e-280 970.3 1634 43.8
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 5.2e-280 968.8 1714 41.0
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 3.9e-275 952.6 1674 42.1
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 2.5e-274 949.9 1665 41.2
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.6e-273 946.0 1652 40.9
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 3.3e-266 922.9 1641 40.8
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 6.2e-265 918.7 1648 41.1
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.8e-264 917.1 1739 39.4
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 3.1e-264 916.4 1692 41.8
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 4.0e-264 916.0 1674 41.4
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 3.4e-263 912.9 1638 41.3
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 7.6e-263 911.8 1654 41.7
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 7.6e-263 911.8 1654 41.7
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 9.9e-263 911.4 1674 41.5
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.4e-262 908.7 1638 41.3
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.1e-261 907.9 1651 41.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 3.5e-260 902.9 1638 41.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.5e-258 897.5 1645 39.7
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 4.8e-257 892.5 1657 39.5
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 8.1e-257 891.7 1668 42.4
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 8.1e-257 891.7 1635 39.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 3.0e-251 873.2 1650 41.5
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 5.6e-250 869.0 1646 40.0
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 5.6e-250 869.0 1642 40.2
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 2.8e-249 866.7 1640 40.4
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.4e-247 859.8 1657 40.1
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.0e-246 858.2 1676 40.0
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.2e-244 851.3 1640 39.0
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.6e-244 850.9 1704 39.1
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.1e-244 850.5 1654 39.7
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 3.5e-244 849.7 1639 39.5
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.6e-244 849.4 1642 39.9
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 3.9e-243 846.3 1325 44.4
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.0e-239 833.9 1672 39.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.2e-238 830.5 1713 37.9
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 5.0e-238 829.3 1648 39.6
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.2e-236 824.7 1645 39.1
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.1e-236 823.9 1636 39.3
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.0e-235 821.6 1641 39.0
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-234 818.1 1646 38.2
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 7.4e-234 815.5 1681 39.1
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 8.2e-233 812.0 1704 37.2
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.1e-232 808.5 1641 38.5
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 3.8e-230 803.1 1688 37.1
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 9.7e-226 788.5 1632 38.4
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.8e-224 784.3 1659 38.2
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 2.6e-223 780.4 1651 38.3
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.3e-217 761.5 1631 37.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 5.0e-214 749.6 1658 37.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.5e-213 747.3 1671 37.6
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 2.7e-212 743.8 1650 37.2
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 3.1e-208 730.3 1689 36.7
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 2.5e-205 720.7 1646 36.3
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.8e-203 714.5 1670 36.0
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.5e-202 711.4 1649 36.4
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 7.5e-202 709.1 1659 36.6
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 2.8e-201 707.2 1644 36.7
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 2.4e-200 704.1 1682 36.3
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.6e-199 701.4 1663 36.1
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 6.6e-198 696.0 1640 37.0
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 9.5e-197 692.2 1667 36.1
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.0e-195 687.2 1614 35.7
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 2.5e-189 667.5 1630 35.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 3.1e-187 660.6 1650 35.1
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.1e-184 652.1 1667 36.5
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.1e-184 650.2 1589 34.9
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 6.0e-183 646.4 1644 35.8
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.5e-181 641.7 1256 40.0
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 2.5e-181 641.0 1649 34.1
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 4.9e-177 626.7 1632 35.4
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 3.2e-176 624.0 1483 35.5
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.9e-173 614.8 1629 33.1
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 2.0e-170 604.7 1642 33.7
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.5e-170 602.8 1724 33.8
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 7.5e-170 602.8 1672 35.8
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 3.2e-168 597.4 1659 33.6
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 9.9e-162 575.9 1786 33.5
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.2e-156 558.9 1626 32.8
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 5.3e-155 553.5 1606 34.0
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.3e-153 548.9 1629 33.6
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.7e-153 548.5 1650 33.4
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 3.8e-153 547.4 1624 32.1
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 1.3e-150 538.9 1640 32.1
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.7e-150 538.5 1768 32.9
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.5e-149 534.6 1442 33.2
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 4.3e-149 533.9 1643 32.2
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 5.3e-147 526.9 1784 32.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 6.4e-145 520.0 1642 31.8
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 9.6e-141 506.1 1655 32.1
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.8e-139 501.9 1655 31.4
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.6e-138 498.0 1651 31.9
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.3e-137 495.7 1652 32.0
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 4.9e-137 493.8 1272 35.3
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.6e-135 488.8 1661 31.6
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 7.9e-135 486.5 1471 33.4
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.1e-133 482.6 1641 31.3
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.5e-133 481.5 1640 31.2
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 3.7e-132 477.6 1646 31.3
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 8.2e-132 476.5 1645 31.3
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 6.9e-131 473.4 1655 31.4
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 4.5e-130 470.7 498 55.2
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 8.2e-124 449.9 1651 30.0
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 4.1e-123 447.6 1665 30.6
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 2.6e-122 444.9 1654 30.8
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 5.5e-120 437.2 743 41.2
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.2e-119 436.0 1655 30.6
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 2.0e-114 418.7 1659 29.9
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.2e-108 398.7 703 41.7
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.2e-108 398.7 1628 29.7
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.3e-107 394.0 1027 34.5
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.7e-100 372.5 1688 29.3
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.9e-97 361.7 1540 29.9
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.2e-96 357.1 315 63.5
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.6e-95 355.9 1634 28.2
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.8e-86 325.9 1633 27.7
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.5e-82 311.2 1622 28.5
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.1e-75 290.0 193 78.2
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 7.3e-72 277.3 1706 26.6
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.7e-71 274.6 486 42.0
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.7e-68 266.2 1499 28.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.0e-57 230.3 555 35.3
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 3.0e-57 228.8 1506 27.8
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.3e-56 224.9 1286 27.7
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-54 220.3 183 67.2
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.4e-54 219.9 1306 27.3
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.5e-48 199.9 184 59.2
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.3e-48 198.4 1612 24.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.1e-42 179.5 194 57.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-37 162.9 508 32.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.1e-32 147.1 1323 25.5
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.8e-31 141.7 179 47.5
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.4e-27 130.2 423 33.8
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.2e-21 110.5 1439 24.2
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.8e-21 108.2 488 31.4
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 7.6e-21 107.8 435 32.2
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.5e-20 104.8 136 47.8
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.6e-18 100.1 69 73.9
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.1e-16 94.0 219 35.2
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 2.5e-16 92.8 498 28.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 3.7e-15 89.0 1579 23.3
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.7e-15 89.0 220 38.2
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 2.4e-14 86.3 190 34.7
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.9e-11 76.6 199 33.7
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.9e-11 76.6 87 48.3
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.6e-10 72.0 234 28.6
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.6e-10 72.0 129 41.1
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 1.5e-08 67.0 142 40.1
CAN.G834.10 Capsicum annuum HOM05D004650 ORTHO05D005715 9.7e-08 64.3 65 53.8
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.8e-07 62.8 1368 23.6
CAN.G1640.15 Capsicum annuum HOM05D000493 ORTHO05D015024 1.4e-06 60.5 80 46.2
CAN.G181.47 Capsicum annuum HOM05D002907 ORTHO05D005554 9.0e-06 57.8 58 56.9


User provided reference genes

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