Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 2161.7 1083 100.0
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1955.6 1046 93.5
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1112 89.9
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1045 93.2
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1952.2 1046 93.4
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1911.0 1046 91.5
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1690.2 1046 80.0
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1671.4 1052 80.0
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1671.0 1052 79.9
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1666.0 1039 80.2
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1647.1 1052 78.2
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1636.7 1053 77.9
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1617.4 1045 77.3
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1617.1 1049 78.1
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1610.9 1056 76.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1608.2 1048 77.0
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1607.0 1048 77.4
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1597.4 1055 76.1
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1596.6 1055 76.5
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1596.3 1053 76.5
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1595.5 1099 73.4
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1594.3 1053 75.7
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1592.0 1048 76.6
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1586.2 1042 76.5
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1585.5 1077 74.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1582.4 1050 76.1
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1582.0 1045 75.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1580.1 1058 75.0
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1577.0 1047 75.6
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1576.2 1053 75.2
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1575.5 1076 73.3
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1573.9 1045 75.5
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1572.8 1041 75.2
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1570.8 1076 73.1
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1570.1 1052 74.6
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1568.9 1065 74.9
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1568.5 1051 75.3
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1568.5 1102 72.3
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1564.3 1044 75.5
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1563.9 1050 75.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1563.9 1051 75.1
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1562.0 1039 75.6
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1561.6 1050 74.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1561.2 1052 75.0
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1560.0 1050 75.0
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1559.3 1050 74.9
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1558.9 1050 74.9
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1558.9 1050 75.0
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1557.3 1061 74.1
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1554.3 1012 77.0
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1551.6 1053 74.3
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1550.8 1050 73.3
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1548.9 1052 73.9
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1548.1 1069 73.6
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1547.7 1049 74.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1546.6 1047 74.6
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1546.6 1052 74.1
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1545.8 1047 74.8
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1545.8 1049 74.3
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1545.0 1048 74.7
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1541.9 1048 74.8
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1538.5 1047 74.3
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1538.5 1044 74.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1537.7 1049 74.1
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1532.7 1051 73.9
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1528.8 1047 72.9
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1528.8 1048 73.6
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1527.7 1048 73.6
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1526.1 1057 73.3
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1525.0 1051 73.2
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1524.6 1129 70.1
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1524.6 1025 75.6
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1523.5 1049 73.5
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1523.1 1048 73.2
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1522.3 1047 73.4
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1521.9 1054 73.1
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1521.9 1041 73.8
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1514.6 1047 72.9
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1510.0 1048 72.8
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1509.6 1077 70.6
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1509.2 1049 73.1
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1508.4 1051 72.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1508.0 1049 72.9
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1507.3 1048 72.7
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1498.0 1047 71.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1497.3 1067 71.0
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1494.2 1324 61.7
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1493.8 1058 71.8
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1489.6 1047 72.2
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1481.1 1073 70.4
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1473.4 1051 71.9
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1466.8 986 74.8
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1462.2 1045 72.1
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1462.2 1040 71.1
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1420.6 1043 68.6
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1392.9 902 77.6
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1391.7 1045 67.6
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1390.9 974 71.9
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1329.7 1046 64.0
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1281.9 864 74.9
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1258.0 848 76.2
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1203.7 868 70.9
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1177.5 838 72.2
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1102.0 822 69.1
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1094.7 1157 51.1
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1081.2 729 76.3
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 4.0e-308 1061.6 1037 56.9
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 4.9e-306 1054.7 722 72.2
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.7e-298 1029.6 1129 49.5
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 7.9e-272 941.0 1101 47.5
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-252 877.5 592 76.9
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 2.7e-243 846.3 669 65.9
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.6e-232 810.4 845 53.7
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 4.0e-231 805.8 583 71.2
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.2e-231 805.4 553 73.6
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.5e-193 681.0 824 49.9
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 2.2e-189 667.2 452 75.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 5.4e-188 662.5 934 42.1
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.0e-154 552.0 489 59.3
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 2.2e-141 507.7 286 84.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.4e-119 435.3 323 66.3
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 7.8e-102 376.3 204 85.3
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 2.3e-98 364.8 261 72.8
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 7.1e-87 326.6 372 47.0
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 7.3e-84 316.6 256 60.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.1e-83 313.2 316 57.6
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.2e-79 299.7 174 79.3
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 5.4e-71 273.9 152 84.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-69 269.6 212 64.6
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.3e-69 269.2 152 83.6
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-68 265.4 208 64.9
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 4.0e-66 257.7 213 67.6
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 5.3e-66 257.3 139 89.2
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.9e-53 214.5 163 68.1
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.6e-49 201.8 132 73.5
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.3e-48 199.5 158 64.6
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.2e-39 167.9 120 72.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.5e-36 158.7 98 82.7
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.3e-35 154.1 210 43.3
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.4e-33 148.3 95 73.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 6.7e-29 134.0 91 69.2
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.7e-29 134.0 78 78.2
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.0e-28 132.5 78 74.4
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 4.4e-28 131.3 82 76.8
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 7.0e-26 124.0 124 54.8
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 1.3e-24 119.8 65 78.5
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 6.5e-24 117.5 117 55.6
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 3.2e-23 115.2 561 25.5
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.2e-23 114.8 101 60.4
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 5.2e-21 107.8 87 58.6
Sopen07g031630 Solanum pennellii HOM05D004029 ORTHO05D004613 7.4e-20 104.0 73 76.7
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.7e-19 101.7 62 77.4
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.7e-16 92.8 52 76.9
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 3.2e-15 88.6 81 56.8
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 4.2e-15 88.2 70 58.6
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-14 84.7 56 73.2
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-14 84.7 56 73.2
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-14 84.7 56 73.2
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.0e-13 83.6 57 64.9
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 1.4e-13 83.2 45 84.4
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 5.7e-12 77.8 99 45.5
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 2.9e-08 65.5 52 63.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.9e-08 65.5 69 46.4
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 5.0e-08 64.7 339 22.4
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.5e-07 62.4 66 50.0


User provided reference genes

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