Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 6.9e-170 600.5 294 100.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 8.5e-144 513.8 293 85.7
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.1e-143 513.5 293 89.4
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 2.7e-142 508.8 293 84.3
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 3.0e-141 505.4 293 84.0
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.4e-125 453.4 237 91.1
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.0e-120 437.2 293 76.1
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.9e-119 433.0 293 74.1
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 7.5e-116 421.0 297 72.4
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 9.8e-116 420.6 293 72.4
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 3.1e-114 415.6 299 70.9
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 4.5e-113 411.8 293 71.7
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.5e-113 411.8 293 70.0
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.9e-112 409.1 299 70.6
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 3.8e-112 408.7 292 69.5
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 6.5e-112 407.9 294 70.4
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 8.5e-112 407.5 292 69.5
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.1e-111 407.1 294 70.1
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 9.4e-111 404.1 294 70.7
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.1e-110 402.9 293 70.3
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.4e-109 400.2 290 72.8
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 3.0e-109 399.1 296 69.3
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 5.2e-109 398.3 293 68.6
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 8.8e-109 397.5 303 67.3
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 8.8e-109 397.5 293 68.3
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.5e-108 396.7 242 76.4
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 7.5e-108 394.4 291 70.4
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 2.2e-107 392.9 241 78.8
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.8e-107 392.5 270 72.6
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 3.7e-107 392.1 298 66.4
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 3.7e-107 392.1 293 69.6
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.3e-107 391.3 294 67.7
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-106 390.2 260 73.1
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-106 390.2 260 73.1
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 4.1e-106 388.7 291 69.1
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 4.1e-106 388.7 291 69.8
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 9.2e-106 387.5 262 73.7
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 2.0e-105 386.3 297 68.0
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 2.7e-105 386.0 254 72.8
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 4.5e-105 385.2 293 66.9
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 5.9e-105 384.8 295 67.1
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 7.7e-105 384.4 249 74.3
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 7.7e-105 384.4 232 78.4
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 7.7e-105 384.4 257 73.9
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.0e-104 384.0 245 74.7
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.0e-104 384.0 291 67.7
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.3e-104 382.9 244 75.0
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 2.9e-104 382.5 242 74.4
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 6.6e-104 381.3 295 67.5
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 6.6e-104 381.3 241 74.3
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 8.6e-104 380.9 289 66.1
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 8.6e-104 380.9 234 79.1
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 8.6e-104 380.9 237 76.4
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 8.6e-104 380.9 260 71.5
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 8.6e-104 380.9 291 66.3
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 8.6e-104 380.9 240 75.8
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.5e-103 380.2 240 75.4
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.5e-103 380.2 296 67.6
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.9e-103 379.8 234 78.6
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 2.5e-103 379.4 245 74.3
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.5e-103 379.4 240 74.6
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 4.3e-103 378.6 300 66.0
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 5.6e-103 378.3 233 76.8
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 9.5e-103 377.5 237 75.9
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 9.5e-103 377.5 253 71.9
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.2e-102 377.1 291 68.7
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 2.8e-102 375.9 245 73.5
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 2.8e-102 375.9 293 66.2
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.6e-102 375.6 250 73.6
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 8.0e-102 374.4 241 74.7
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 4.0e-101 372.1 248 73.0
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 5.2e-101 371.7 237 75.5
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 6.8e-101 371.3 299 63.9
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.2e-100 370.5 247 72.9
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 1.2e-100 370.5 293 65.5
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 1.2e-100 370.5 304 63.5
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 3.4e-100 369.0 248 72.2
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 3.4e-100 369.0 253 71.5
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.7e-100 368.2 242 72.7
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 2.2e-99 366.3 241 74.3
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 2.9e-99 365.9 242 73.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 6.4e-99 364.8 235 74.9
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 2.4e-98 362.8 247 71.3
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 7.0e-98 361.3 245 73.1
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 7.0e-98 361.3 245 73.1
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 5.9e-97 358.2 282 64.2
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 1.0e-96 357.5 242 73.6
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 2.3e-96 356.3 256 70.7
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 8.6e-96 354.4 288 63.2
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.1e-95 354.0 240 70.8
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.9e-95 353.2 231 73.6
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.9e-95 353.2 231 73.6
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.8e-93 346.7 212 76.9
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 4.4e-92 342.0 242 70.7
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 2.4e-90 336.3 285 60.4
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 7.0e-90 334.7 240 67.1
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.9e-87 326.6 291 58.8
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 3.6e-86 322.4 170 87.1
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 5.2e-85 318.5 238 67.6
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.5e-84 317.0 256 63.3
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 4.4e-84 315.5 185 76.8
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 7.5e-84 314.7 193 73.6
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.1e-82 310.8 283 60.4
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.1e-82 308.9 263 61.6
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 2.7e-81 306.2 195 72.8
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 6.0e-81 305.1 241 64.3
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.5e-79 300.4 232 63.8
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 4.3e-79 298.9 240 65.4
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 9.5e-79 297.7 234 63.7
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.3e-77 293.1 218 66.1
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 8.9e-77 291.2 227 63.4
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.1e-74 284.3 234 63.7
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 6.6e-72 275.0 246 61.8
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 9.6e-71 271.2 227 61.2
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 1.6e-57 227.3 182 59.3
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.9e-55 220.3 201 54.2
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 2.8e-54 216.5 233 52.4
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 4.8e-54 215.7 295 47.5
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 4.5e-52 209.1 166 57.8
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 8.4e-51 204.9 165 57.6
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 3.2e-50 203.0 165 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 7.1e-50 201.8 165 55.8
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 7.9e-49 198.4 183 52.5
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 3.0e-48 196.4 111 82.0
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.4e-45 187.6 157 56.1
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 1.1e-42 177.9 165 53.3
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.1e-39 167.9 219 49.8
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.4e-39 165.2 141 55.3
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 5.3e-37 159.1 88 79.5
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.3e-31 139.8 255 38.8
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 4.1e-29 132.9 68 86.8
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.0e-27 128.3 99 65.7
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 7.9e-17 92.0 94 55.3
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 1.8e-16 90.9 96 53.1
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 3.1e-13 80.1 37 91.9
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 7.0e-13 79.0 78 50.0
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.2e-12 78.2 54 61.1
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 5.5e-10 69.3 40 77.5
Prupe.1G061900 Prunus persica HOM05D001659 ORTHO05D001659 2.3e-08 63.9 150 28.0
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 5.2e-08 62.8 47 63.8
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 3.3e-07 60.1 139 28.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.3e-07 60.1 35 71.4
Solyc08g005550.4 Solanum lycopersicum HOM05D001659 ORTHO05D001659 5.7e-07 59.3 139 28.1
Sopen08g001570 Solanum pennellii HOM05D001659 ORTHO05D001659 7.5e-07 58.9 139 28.1
PGSC0003DMG400018484 Solanum tuberosum HOM05D001659 ORTHO05D001659 9.7e-07 58.5 139 27.3
THA.LOC104814432 Tarenaya hassleriana HOM05D001659 ORTHO05D001659 1.7e-06 57.8 150 28.0


User provided reference genes

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